Wall clock time and date at job start Mon Mar 30 2020 05:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.47527 * 2 1 4 4 C 1.46895 * 111.00260 * 196.08717 * 3 2 1 5 5 C 1.50703 * 109.47266 * 66.05011 * 4 3 2 6 6 H 1.08004 * 119.99583 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99981 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00171 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99867 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47388 * 59.99987 * 9 7 5 11 11 H 1.48506 * 109.47303 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47504 * 299.99746 * 9 7 5 13 13 C 1.46897 * 110.99652 * 72.13249 * 3 2 1 14 14 C 1.53003 * 109.47200 * 199.80600 * 13 3 2 15 15 H 1.08995 * 109.47094 * 301.24737 * 14 13 3 16 16 O 1.42901 * 109.47101 * 61.24636 * 14 13 3 17 17 C 1.53005 * 109.46932 * 181.24720 * 14 13 3 18 18 C 1.53001 * 109.46750 * 175.00085 * 17 14 13 19 19 C 1.53002 * 109.47222 * 180.02562 * 18 17 14 20 20 O 1.42898 * 112.85277 * 53.79855 * 19 18 17 21 21 C 1.53781 * 113.61099 * 282.49661 * 19 18 17 22 22 C 1.53786 * 87.08171 * 220.01680 * 21 19 18 23 23 C 1.53777 * 87.07929 * 25.43223 * 22 21 19 24 24 H 1.08993 * 109.47401 * 181.15935 * 1 2 3 25 25 H 1.09002 * 109.46636 * 301.16119 * 1 2 3 26 26 H 1.09002 * 109.47200 * 61.15576 * 1 2 3 27 27 H 1.09006 * 109.47028 * 240.00166 * 2 1 3 28 28 H 1.08997 * 109.47147 * 120.00689 * 2 1 3 29 29 H 1.09001 * 109.46841 * 186.04808 * 4 3 2 30 30 H 1.08998 * 109.46977 * 306.04843 * 4 3 2 31 31 H 0.97008 * 119.99974 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.47314 * 319.80612 * 13 3 2 33 33 H 1.09003 * 109.47378 * 79.80372 * 13 3 2 34 34 H 0.96700 * 113.99962 * 64.89939 * 16 14 13 35 35 H 1.08993 * 109.47357 * 294.99499 * 17 14 13 36 36 H 1.09001 * 109.47370 * 55.00307 * 17 14 13 37 37 H 1.09005 * 109.47122 * 299.99938 * 18 17 14 38 38 H 1.08997 * 109.47675 * 60.00247 * 18 17 14 39 39 H 0.96705 * 113.99976 * 309.67672 * 20 19 18 40 40 H 1.09002 * 113.61702 * 334.56614 * 21 19 18 41 41 H 1.09001 * 113.61619 * 105.46547 * 21 19 18 42 42 H 1.09001 * 113.61146 * 270.88298 * 22 21 19 43 43 H 1.08994 * 113.61176 * 139.98050 * 22 21 19 44 44 H 1.09001 * 113.61400 * 220.01832 * 23 22 21 45 45 H 1.09005 * 113.61768 * 89.11568 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4376 1.4420 -0.3800 5 6 3.5910 1.0076 -1.8149 6 1 2.7221 0.7177 -2.3871 7 6 4.8406 0.9793 -2.3967 8 7 5.8986 1.3318 -1.6997 9 14 5.0308 0.4402 -4.1751 10 1 4.2465 1.3452 -5.0534 11 1 6.4641 0.4980 -4.5593 12 1 4.5329 -0.9506 -4.3267 13 6 1.7986 2.0215 1.3053 14 6 1.8463 3.5424 1.1457 15 1 2.8138 3.8347 0.7378 16 8 0.8086 3.9609 0.2568 17 6 1.6468 4.2049 2.5104 18 6 1.8183 5.7190 2.3721 19 6 1.6196 6.3815 3.7369 20 8 2.4582 5.8251 4.7513 21 6 0.1442 6.5036 4.1532 22 6 0.4958 7.8968 4.7012 23 6 1.6508 7.9181 3.6862 24 1 -0.3634 -1.0274 0.0208 25 1 -0.3633 0.5318 0.8794 26 1 -0.3634 0.4958 -0.9002 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.8028 2.4629 -0.2684 30 1 4.0134 0.7777 0.2643 31 1 6.7778 1.3122 -2.1093 32 1 0.8230 1.7272 1.6924 33 1 2.5759 1.7045 2.0005 34 1 -0.0844 3.8004 0.5914 35 1 0.6446 3.9849 2.8781 36 1 2.3848 3.8183 3.2133 37 1 2.8206 5.9390 2.0044 38 1 1.0804 6.1056 1.6693 39 1 2.4249 4.8600 4.8035 40 1 -0.5468 6.5275 3.3105 41 1 -0.1521 5.7929 4.9247 42 1 0.8272 7.8867 5.7396 43 1 -0.2697 8.6481 4.5074 44 1 2.5709 8.3494 4.0806 45 1 1.3718 8.3287 2.7157 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929775609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:48 Heat of formation + Delta-G solvation = -91.655670 kcal Electronic energy + Delta-G solvation = -21740.916635 eV Core-core repulsion = 18565.615510 eV Total energy + Delta-G solvation = -3175.301125 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.94825 -38.01129 -35.86051 -34.77204 -32.60682 -32.46876 -30.30653 -28.63621 -26.43322 -25.89347 -24.43706 -22.44718 -22.09278 -20.98933 -19.81411 -19.66185 -16.72202 -16.52882 -16.02341 -15.82729 -15.32632 -15.02421 -14.76696 -14.33081 -14.03519 -13.88629 -13.61274 -13.33953 -12.71485 -12.64530 -12.29880 -12.06935 -11.96464 -11.90217 -11.44434 -11.27725 -11.10782 -11.08133 -10.98185 -10.86897 -10.72190 -10.59190 -10.43397 -10.29331 -10.11865 -9.81480 -9.66224 -9.41916 -9.06120 -8.39977 -7.15569 -5.99557 -4.00053 3.35913 3.39713 3.43216 3.91526 4.31235 4.41367 4.47089 4.59317 4.69124 4.79258 4.94584 5.18022 5.20309 5.30217 5.36143 5.47350 5.52326 5.54756 5.66132 5.69913 5.70651 5.73553 5.82660 5.86632 5.96793 5.99739 6.06917 6.12675 6.14554 6.22222 6.26013 6.36160 6.57067 6.71842 6.80229 7.31965 7.36196 7.53008 7.83794 8.09537 8.16285 8.26473 8.60034 9.07236 9.63736 11.11432 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.003900 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.538552 B = 7177.803473 C = 7853.158668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.056 3.944 3 N -0.525 5.525 4 C 0.193 3.807 5 C -0.504 4.504 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.024 3.976 14 C 0.117 3.883 15 H 0.101 0.899 16 O -0.541 6.541 17 C -0.154 4.154 18 C -0.132 4.132 19 C 0.107 3.893 20 O -0.545 6.545 21 C -0.165 4.165 22 C -0.137 4.137 23 C -0.129 4.129 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.014 0.986 29 H 0.030 0.970 30 H -0.013 1.013 31 H 0.261 0.739 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.359 0.641 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.378 0.622 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.781 7.845 12.222 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 N -0.249 5.249 4 C 0.068 3.932 5 C -0.543 4.543 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.106 4.106 14 C 0.057 3.943 15 H 0.119 0.881 16 O -0.344 6.344 17 C -0.192 4.192 18 C -0.169 4.169 19 C 0.066 3.934 20 O -0.352 6.352 21 C -0.203 4.203 22 C -0.174 4.174 23 C -0.166 4.166 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.032 0.968 29 H 0.048 0.952 30 H 0.005 0.995 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.204 0.796 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.227 0.773 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.180 8.920 11.578 18.401 hybrid contribution 0.202 -1.572 0.019 1.585 sum -10.978 7.349 11.597 17.579 Atomic orbital electron populations 1.21794 0.96735 0.99939 1.01512 1.21965 0.94043 0.90523 1.00735 1.62044 1.22782 1.15447 1.24653 1.19738 0.80941 0.96671 0.95819 1.21121 0.92772 1.43816 0.96597 0.91926 1.24978 0.95857 0.95677 0.98106 1.69948 0.98628 1.48710 1.36707 0.86573 0.76809 0.79110 0.84984 1.20141 1.21399 1.20340 1.22751 0.99836 0.95490 0.92490 1.21900 0.92528 0.92078 0.87809 0.88077 1.86692 1.16239 1.84921 1.46498 1.22301 1.01865 0.95805 0.99239 1.22050 1.03585 0.95147 0.96157 1.22245 0.89544 0.94140 0.87429 1.86452 1.66991 1.25851 1.55938 1.23614 0.97385 0.97920 1.01340 1.22755 0.98188 0.97144 0.99302 1.23029 0.99512 0.93940 1.00137 0.93584 0.93925 0.92156 0.89667 0.96818 0.95175 0.99515 0.92934 0.92078 0.95268 0.79589 0.91790 0.91370 0.90965 0.90031 0.77335 0.89364 0.91314 0.90083 0.91577 0.90777 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 10.00 37.16 0.37 -1.83 16 2 C 0.06 1.08 5.52 -3.82 -0.02 1.06 16 3 N -0.52 -11.21 4.27 -236.07 -1.01 -12.22 16 4 C 0.19 5.06 4.55 -4.98 -0.02 5.04 16 5 C -0.50 -14.35 8.28 -34.44 -0.29 -14.64 16 6 H 0.06 1.77 7.26 -52.48 -0.38 1.39 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 9 Si 0.90 21.96 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.02 0.40 4.51 -3.82 -0.02 0.38 16 14 C 0.12 1.83 3.04 -26.73 -0.08 1.75 16 15 H 0.10 1.94 6.76 -51.93 -0.35 1.58 16 16 O -0.54 -8.76 12.77 -35.23 -0.45 -9.21 16 17 C -0.15 -1.76 4.42 -26.73 -0.12 -1.88 16 18 C -0.13 -1.50 4.75 -26.73 -0.13 -1.63 16 19 C 0.11 1.13 1.38 -89.81 -0.12 1.00 16 20 O -0.55 -6.27 13.39 -35.23 -0.47 -6.74 16 21 C -0.16 -1.49 7.32 -25.92 -0.19 -1.67 16 22 C -0.14 -1.22 8.02 -25.92 -0.21 -1.42 16 23 C -0.13 -1.27 7.47 -25.92 -0.19 -1.47 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.59 6.51 -51.93 -0.34 0.25 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.08 1.85 6.59 -51.93 -0.34 1.50 16 28 H 0.01 0.26 8.05 -51.93 -0.42 -0.16 16 29 H 0.03 0.84 6.62 -51.93 -0.34 0.50 16 30 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.06 0.90 6.24 -51.93 -0.32 0.58 16 33 H 0.03 0.51 8.00 -51.93 -0.42 0.10 16 34 H 0.36 4.33 9.03 45.56 0.41 4.75 16 35 H 0.06 0.63 8.05 -51.93 -0.42 0.21 16 36 H 0.07 0.74 6.75 -51.93 -0.35 0.39 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.93 7.73 -51.93 -0.40 0.53 16 39 H 0.38 3.34 7.18 45.56 0.33 3.66 16 40 H 0.09 0.74 8.04 -51.93 -0.42 0.32 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 353.61 15.07 5.33 5.33 Total: -1.00 -31.86 353.61 -8.70 -40.56 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.70 Total: 5.43 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -1.11 Total: -13.83 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.27 Total: -38.47 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.92 Total: -15.95 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.86 -8.70 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929775609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.094 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds