Wall clock time and date at job start Mon Mar 30 2020 05:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.47527 * 2 1 4 4 C 1.46895 * 111.00260 * 196.08717 * 3 2 1 5 5 C 1.50703 * 109.47266 * 66.05011 * 4 3 2 6 6 H 1.08004 * 119.99583 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99981 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00171 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99867 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47388 * 59.99987 * 9 7 5 11 11 H 1.48506 * 109.47303 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47504 * 299.99746 * 9 7 5 13 13 C 1.46897 * 110.99652 * 72.13249 * 3 2 1 14 14 C 1.53003 * 109.47200 * 199.80600 * 13 3 2 15 15 H 1.08995 * 109.47094 * 301.24737 * 14 13 3 16 16 O 1.42901 * 109.47101 * 61.24636 * 14 13 3 17 17 C 1.53005 * 109.46932 * 181.24720 * 14 13 3 18 18 C 1.53001 * 109.46750 * 175.00085 * 17 14 13 19 19 C 1.53002 * 109.47222 * 180.02562 * 18 17 14 20 20 O 1.42898 * 112.85277 * 53.79855 * 19 18 17 21 21 C 1.53781 * 113.61099 * 282.49661 * 19 18 17 22 22 C 1.53786 * 87.08171 * 220.01680 * 21 19 18 23 23 C 1.53777 * 87.07929 * 25.43223 * 22 21 19 24 24 H 1.08993 * 109.47401 * 181.15935 * 1 2 3 25 25 H 1.09002 * 109.46636 * 301.16119 * 1 2 3 26 26 H 1.09002 * 109.47200 * 61.15576 * 1 2 3 27 27 H 1.09006 * 109.47028 * 240.00166 * 2 1 3 28 28 H 1.08997 * 109.47147 * 120.00689 * 2 1 3 29 29 H 1.09001 * 109.46841 * 186.04808 * 4 3 2 30 30 H 1.08998 * 109.46977 * 306.04843 * 4 3 2 31 31 H 0.97008 * 119.99974 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.47314 * 319.80612 * 13 3 2 33 33 H 1.09003 * 109.47378 * 79.80372 * 13 3 2 34 34 H 0.96700 * 113.99962 * 64.89939 * 16 14 13 35 35 H 1.08993 * 109.47357 * 294.99499 * 17 14 13 36 36 H 1.09001 * 109.47370 * 55.00307 * 17 14 13 37 37 H 1.09005 * 109.47122 * 299.99938 * 18 17 14 38 38 H 1.08997 * 109.47675 * 60.00247 * 18 17 14 39 39 H 0.96705 * 113.99976 * 309.67672 * 20 19 18 40 40 H 1.09002 * 113.61702 * 334.56614 * 21 19 18 41 41 H 1.09001 * 113.61619 * 105.46547 * 21 19 18 42 42 H 1.09001 * 113.61146 * 270.88298 * 22 21 19 43 43 H 1.08994 * 113.61176 * 139.98050 * 22 21 19 44 44 H 1.09001 * 113.61400 * 220.01832 * 23 22 21 45 45 H 1.09005 * 113.61768 * 89.11568 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4376 1.4420 -0.3800 5 6 3.5910 1.0076 -1.8149 6 1 2.7221 0.7177 -2.3871 7 6 4.8406 0.9793 -2.3967 8 7 5.8986 1.3318 -1.6997 9 14 5.0308 0.4402 -4.1751 10 1 4.2465 1.3452 -5.0534 11 1 6.4641 0.4980 -4.5593 12 1 4.5329 -0.9506 -4.3267 13 6 1.7986 2.0215 1.3053 14 6 1.8463 3.5424 1.1457 15 1 2.8138 3.8347 0.7378 16 8 0.8086 3.9609 0.2568 17 6 1.6468 4.2049 2.5104 18 6 1.8183 5.7190 2.3721 19 6 1.6196 6.3815 3.7369 20 8 2.4582 5.8251 4.7513 21 6 0.1442 6.5036 4.1532 22 6 0.4958 7.8968 4.7012 23 6 1.6508 7.9181 3.6862 24 1 -0.3634 -1.0274 0.0208 25 1 -0.3633 0.5318 0.8794 26 1 -0.3634 0.4958 -0.9002 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.8028 2.4629 -0.2684 30 1 4.0134 0.7777 0.2643 31 1 6.7778 1.3122 -2.1093 32 1 0.8230 1.7272 1.6924 33 1 2.5759 1.7045 2.0005 34 1 -0.0844 3.8004 0.5914 35 1 0.6446 3.9849 2.8781 36 1 2.3848 3.8183 3.2133 37 1 2.8206 5.9390 2.0044 38 1 1.0804 6.1056 1.6693 39 1 2.4249 4.8600 4.8035 40 1 -0.5468 6.5275 3.3105 41 1 -0.1521 5.7929 4.9247 42 1 0.8272 7.8867 5.7396 43 1 -0.2697 8.6481 4.5074 44 1 2.5709 8.3494 4.0806 45 1 1.3718 8.3287 2.7157 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929775609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:47 Heat of formation + Delta-G solvation = -116.257253 kcal Electronic energy + Delta-G solvation = -21741.983440 eV Core-core repulsion = 18565.615510 eV Total energy + Delta-G solvation = -3176.367930 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78215 -39.40809 -37.35111 -35.59933 -34.74308 -33.54563 -31.75175 -30.23793 -27.99930 -26.69061 -25.67811 -24.33412 -23.20250 -22.08134 -21.30535 -20.56595 -18.61428 -17.61361 -17.36140 -17.00019 -16.56184 -16.35648 -15.87232 -15.83111 -15.53805 -15.21532 -14.80903 -14.37535 -14.23005 -13.93444 -13.91154 -13.43475 -12.98457 -12.93164 -12.83208 -12.70366 -12.60687 -12.52170 -12.35107 -12.04208 -11.97529 -11.88538 -11.78947 -11.69292 -11.40110 -11.26233 -11.15665 -10.69894 -10.60784 -10.37566 -8.90631 -8.20798 -6.30303 1.38885 1.42727 1.50425 2.39646 3.10177 3.15428 3.16539 3.58121 3.70351 3.73469 3.84130 3.92960 4.04105 4.19536 4.22282 4.33107 4.40737 4.52366 4.63552 4.68235 4.71187 4.76286 4.81701 4.86069 4.86252 4.90366 5.05107 5.05506 5.09555 5.12685 5.18632 5.26404 5.31967 5.35062 5.44152 5.47879 5.48779 5.65471 6.08104 6.40041 6.69388 6.80077 6.86171 7.11119 7.39093 8.90089 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.003900 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.538552 B = 7177.803473 C = 7853.158668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.052 3.948 3 N -0.533 5.533 4 C 0.210 3.790 5 C -0.522 4.522 6 H 0.060 0.940 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.023 3.977 14 C 0.124 3.876 15 H 0.054 0.946 16 O -0.560 6.560 17 C -0.139 4.139 18 C -0.126 4.126 19 C 0.102 3.898 20 O -0.562 6.562 21 C -0.155 4.155 22 C -0.133 4.133 23 C -0.137 4.137 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.017 0.983 29 H 0.002 0.998 30 H -0.044 1.044 31 H 0.264 0.736 32 H 0.097 0.903 33 H 0.022 0.978 34 H 0.380 0.620 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.388 0.612 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.258 7.603 12.562 20.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.076 4.076 3 N -0.257 5.257 4 C 0.084 3.916 5 C -0.560 4.560 6 H 0.078 0.922 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.792 3.208 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.191 1.191 13 C -0.105 4.105 14 C 0.064 3.936 15 H 0.072 0.928 16 O -0.365 6.365 17 C -0.177 4.177 18 C -0.164 4.164 19 C 0.062 3.938 20 O -0.371 6.371 21 C -0.193 4.193 22 C -0.170 4.170 23 C -0.174 4.174 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.035 0.965 29 H 0.020 0.980 30 H -0.027 1.027 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.041 0.959 34 H 0.228 0.772 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.238 0.762 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.693 8.667 11.935 20.126 hybrid contribution 0.967 -1.488 -0.055 1.776 sum -12.725 7.179 11.880 18.831 Atomic orbital electron populations 1.21681 0.92935 1.01845 1.02148 1.22032 0.97032 0.89128 0.99439 1.61996 1.19182 1.17005 1.27551 1.19341 0.83722 0.93928 0.94617 1.21443 0.92962 1.43933 0.97707 0.92170 1.25912 0.95440 0.95528 1.02850 1.70082 0.99152 1.49623 1.38751 0.85462 0.77027 0.79135 0.79160 1.19514 1.20734 1.19067 1.22899 1.01359 0.95988 0.90275 1.21663 0.90747 0.91480 0.89711 0.92785 1.86645 1.17575 1.84963 1.47365 1.22150 1.03807 0.95250 0.96478 1.21979 1.02093 0.95294 0.97000 1.22321 0.90807 0.94218 0.86486 1.86434 1.67564 1.26907 1.56159 1.23581 0.95987 0.97906 1.01821 1.22732 0.97933 0.97719 0.98608 1.23135 0.99652 0.93645 1.01014 0.91175 0.91663 0.92950 0.92701 0.96496 0.98025 1.02686 0.92744 0.88454 0.95940 0.77210 0.88692 0.90794 0.93648 0.89791 0.76196 0.88192 0.90610 0.90623 0.90050 0.91981 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 10.00 71.98 0.72 -2.90 16 2 C 0.05 1.99 5.52 86.30 0.48 2.46 16 3 N -0.53 -23.01 4.27 -900.79 -3.85 -26.86 16 4 C 0.21 11.55 4.55 85.56 0.39 11.93 16 5 C -0.52 -30.62 8.28 25.60 0.21 -30.41 16 6 H 0.06 3.48 7.26 -2.91 -0.02 3.46 16 7 C 0.00 0.03 5.46 84.65 0.46 0.49 16 8 N -0.94 -57.80 13.29 21.44 0.28 -57.52 16 9 Si 0.97 45.51 29.54 68.60 2.03 47.53 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 13 C 0.02 0.78 4.51 86.30 0.39 1.16 16 14 C 0.12 3.89 3.04 30.60 0.09 3.98 16 15 H 0.05 2.21 6.76 -2.39 -0.02 2.20 16 16 O -0.56 -17.51 12.77 -148.98 -1.90 -19.42 16 17 C -0.14 -2.97 4.42 30.60 0.14 -2.83 16 18 C -0.13 -2.79 4.75 30.60 0.15 -2.65 16 19 C 0.10 2.01 1.38 -10.27 -0.01 2.00 16 20 O -0.56 -12.38 13.39 -148.98 -1.99 -14.37 16 21 C -0.16 -2.37 7.32 31.12 0.23 -2.14 16 22 C -0.13 -2.09 8.02 31.12 0.25 -1.84 16 23 C -0.14 -2.58 7.47 31.12 0.23 -2.35 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 1.54 6.51 -2.39 -0.02 1.53 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 2.41 6.59 -2.38 -0.02 2.40 16 28 H 0.02 0.63 8.05 -2.39 -0.02 0.61 16 29 H 0.00 0.10 6.62 -2.39 -0.02 0.09 16 30 H -0.04 -2.65 8.12 -2.39 -0.02 -2.67 16 31 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 32 H 0.10 2.54 6.24 -2.38 -0.01 2.53 16 33 H 0.02 0.79 8.00 -2.39 -0.02 0.77 16 34 H 0.38 8.08 9.03 -74.06 -0.67 7.41 16 35 H 0.09 1.49 8.05 -2.39 -0.02 1.47 16 36 H 0.07 1.51 6.75 -2.39 -0.02 1.50 16 37 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.08 1.82 7.73 -2.39 -0.02 1.80 16 39 H 0.39 6.33 7.18 -74.05 -0.53 5.80 16 40 H 0.10 1.31 8.04 -2.39 -0.02 1.29 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.10 1.71 8.10 -2.38 -0.02 1.69 16 Total: -1.00 -71.40 353.61 -1.95 -73.35 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -0.23 Total: 20.38 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 3.72 Total: -23.09 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -3.56 Total: -84.38 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -3.90 Total: -33.79 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -71.40 -1.95 -73.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929775609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.909 kcal (2) G-P(sol) polarization free energy of solvation -71.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds