Wall clock time and date at job start Mon Mar 30 2020 05:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47118 * 2 1 4 4 C 1.50701 * 109.47026 * 240.00229 * 2 1 3 5 5 H 1.08005 * 119.99899 * 240.00079 * 4 2 1 6 6 C 1.37874 * 120.00340 * 60.00073 * 4 2 1 7 7 N 1.31519 * 119.99634 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00325 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.46809 * 59.99882 * 8 6 4 10 10 H 1.48499 * 109.47080 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47094 * 300.00050 * 8 6 4 12 12 N 1.46894 * 109.46967 * 120.00049 * 2 1 3 13 13 C 1.46898 * 111.00226 * 58.95488 * 12 2 1 14 14 C 1.46897 * 111.00170 * 294.99577 * 12 2 1 15 15 C 1.53006 * 109.47346 * 189.99915 * 14 12 2 16 16 H 1.09000 * 109.47050 * 305.00312 * 15 14 12 17 17 O 1.42906 * 109.46752 * 65.00065 * 15 14 12 18 18 C 1.52997 * 109.47164 * 185.00309 * 15 14 12 19 19 C 1.52996 * 109.46894 * 175.00377 * 18 15 14 20 20 C 1.53000 * 109.47246 * 179.97438 * 19 18 15 21 21 O 1.42900 * 112.84828 * 53.80010 * 20 19 18 22 22 C 1.53776 * 113.61448 * 282.49779 * 20 19 18 23 23 C 1.53782 * 87.08371 * 220.01677 * 22 20 19 24 24 C 1.53781 * 87.08040 * 25.42964 * 23 22 20 25 25 H 1.09003 * 109.46859 * 300.00556 * 1 2 3 26 26 H 1.09010 * 109.46937 * 59.99417 * 1 2 3 27 27 H 1.08994 * 109.47616 * 179.97438 * 1 2 3 28 28 H 0.97005 * 119.99856 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47073 * 296.04709 * 13 12 2 30 30 H 1.08998 * 109.47276 * 56.04182 * 13 12 2 31 31 H 1.08997 * 109.47345 * 176.04318 * 13 12 2 32 32 H 1.09004 * 109.46772 * 70.00657 * 14 12 2 33 33 H 1.08992 * 109.47408 * 310.00133 * 14 12 2 34 34 H 0.96701 * 113.99492 * 60.00095 * 17 15 14 35 35 H 1.09001 * 109.47096 * 295.00066 * 18 15 14 36 36 H 1.08994 * 109.47065 * 55.00225 * 18 15 14 37 37 H 1.09001 * 109.46995 * 299.99751 * 19 18 15 38 38 H 1.08998 * 109.47867 * 60.00073 * 19 18 15 39 39 H 0.96699 * 114.00012 * 309.66900 * 21 20 19 40 40 H 1.09003 * 113.61429 * 334.56190 * 22 20 19 41 41 H 1.09002 * 113.61946 * 105.47012 * 22 20 19 42 42 H 1.09006 * 113.61332 * 270.88486 * 23 22 20 43 43 H 1.09002 * 113.61743 * 139.98064 * 23 22 20 44 44 H 1.09000 * 113.61446 * 220.02303 * 24 23 22 45 45 H 1.08998 * 113.61420 * 89.11347 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8256 -2.5202 -4.0077 10 1 1.8259 -0.4205 -5.2205 11 1 3.8062 -1.1209 -4.0082 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6487 0.0392 2.4180 15 6 2.3789 -0.5663 3.6186 16 1 2.1675 -1.6343 3.6716 17 8 3.7861 -0.3659 3.4708 18 6 1.8990 0.1129 4.9029 19 6 2.5351 -0.5756 6.1121 20 6 2.0558 0.1039 7.3964 21 8 0.6315 0.1712 7.4902 22 6 2.7578 1.4413 7.6846 23 6 2.7823 1.0198 9.1633 24 6 2.7321 -0.4352 8.6680 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7089 1.1615 -3.4844 29 1 0.4419 -2.0731 1.3347 30 1 1.8166 -2.5950 0.3318 31 1 1.9617 -2.5868 2.1058 32 1 0.5722 -0.0346 2.5726 33 1 1.9298 1.0869 2.3125 34 1 4.0474 0.5636 3.4169 35 1 2.1893 1.1634 4.8886 36 1 0.8138 0.0366 4.9705 37 1 2.2448 -1.6262 6.1263 38 1 3.6203 -0.4994 6.0445 39 1 0.2020 0.5314 6.7022 40 1 3.7484 1.5199 7.2366 41 1 2.1335 2.3133 7.4895 42 1 1.8946 1.3229 9.7185 43 1 3.7104 1.2751 9.6749 44 1 2.0869 -1.0782 9.2666 45 1 3.7155 -0.8696 8.4887 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929832785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:14 Heat of formation + Delta-G solvation = -84.407287 kcal Electronic energy + Delta-G solvation = -21753.760804 eV Core-core repulsion = 18578.773993 eV Total energy + Delta-G solvation = -3174.986811 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.02191 -38.17660 -36.13025 -34.84458 -32.77428 -32.46240 -29.43500 -27.92692 -26.14639 -25.76364 -25.14541 -23.88111 -21.78251 -21.01545 -19.85958 -19.17718 -16.79412 -16.30531 -16.00889 -15.89652 -15.39344 -15.14831 -15.03588 -14.27038 -14.12371 -13.79529 -13.38282 -13.07523 -12.88455 -12.71810 -12.34828 -12.05472 -11.99143 -11.54406 -11.33593 -11.19176 -11.10784 -11.06749 -10.92412 -10.80902 -10.74396 -10.49225 -10.40172 -10.33353 -10.04649 -9.99560 -9.82034 -9.33219 -8.85211 -8.38060 -7.08828 -6.00613 -4.04021 3.33394 3.37282 3.40812 3.83798 4.24574 4.35661 4.43285 4.54647 4.62888 4.70361 4.90489 5.07906 5.15132 5.28124 5.32034 5.44039 5.45727 5.50939 5.60371 5.64499 5.66595 5.75374 5.77769 5.90364 6.06607 6.10797 6.12979 6.17351 6.25620 6.38233 6.46257 6.66547 6.81207 6.90698 7.11512 7.45424 7.48167 7.71132 7.83978 7.99593 8.14733 8.39278 8.61760 9.02049 9.61008 11.06631 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.044580 B = 0.003256 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.926629 B = 8598.073701 C = 8740.017950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.211 3.789 3 H 0.037 0.963 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.525 5.525 13 C 0.033 3.967 14 C 0.024 3.976 15 C 0.113 3.887 16 H 0.094 0.906 17 O -0.548 6.548 18 C -0.155 4.155 19 C -0.130 4.130 20 C 0.107 3.893 21 O -0.546 6.546 22 C -0.165 4.165 23 C -0.137 4.137 24 C -0.129 4.129 25 H 0.005 0.995 26 H 0.087 0.913 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.013 0.987 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.031 0.969 33 H 0.066 0.934 34 H 0.368 0.632 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.378 0.622 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.700 0.435 19.432 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.104 3.896 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.248 5.248 13 C -0.115 4.115 14 C -0.105 4.105 15 C 0.053 3.947 16 H 0.112 0.888 17 O -0.352 6.352 18 C -0.193 4.193 19 C -0.168 4.168 20 C 0.066 3.934 21 O -0.353 6.353 22 C -0.203 4.203 23 C -0.174 4.174 24 C -0.166 4.166 25 H 0.024 0.976 26 H 0.106 0.894 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.214 0.786 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.227 0.773 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.258 -0.370 19.850 19.982 hybrid contribution -0.943 0.532 -1.461 1.819 sum 1.315 0.163 18.389 18.437 Atomic orbital electron populations 1.22408 1.01024 0.99306 1.00397 1.19306 0.89580 0.94474 0.86190 0.94526 1.21101 1.30498 1.12486 0.89700 0.91948 1.24930 0.95244 0.95140 0.99008 1.69879 1.37142 1.23093 1.23474 0.86577 0.79273 0.79590 0.82062 1.20383 1.21420 1.20190 1.62269 1.59246 1.01699 1.01615 1.22262 0.96393 0.91449 1.01413 1.22743 0.97113 0.98535 0.92144 1.21941 0.81466 1.00076 0.91189 0.88777 1.86578 1.22110 1.30483 1.96037 1.22297 1.00795 1.00493 0.95746 1.22040 1.01835 1.00091 0.92838 1.22248 0.81011 0.95349 0.94812 1.86445 1.17811 1.86950 1.44119 1.23615 1.01528 0.98121 0.97033 1.22758 1.01956 0.96277 0.96408 1.23027 1.00447 0.97236 0.95895 0.97557 0.89388 0.95138 0.92989 0.96818 0.90709 0.93905 0.95125 0.91525 0.78584 0.91456 0.91405 0.91312 0.90002 0.77257 0.89300 0.91186 0.90050 0.91526 0.90829 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.27 37.16 0.31 -3.83 16 2 C 0.21 5.28 2.34 -68.87 -0.16 5.12 16 3 H 0.04 1.01 8.03 -51.93 -0.42 0.59 16 4 C -0.50 -13.72 7.88 -34.44 -0.27 -13.99 16 5 H 0.06 1.73 6.77 -52.48 -0.36 1.37 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.54 11.32 55.43 0.63 -24.91 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.53 -11.19 4.69 -236.29 -1.11 -12.30 16 13 C 0.03 0.66 8.56 60.06 0.51 1.18 16 14 C 0.02 0.41 4.03 -3.82 -0.02 0.39 16 15 C 0.11 1.57 2.92 -26.73 -0.08 1.50 16 16 H 0.09 1.40 6.34 -51.93 -0.33 1.08 16 17 O -0.55 -8.19 12.82 -35.23 -0.45 -8.64 16 18 C -0.16 -1.62 4.46 -26.73 -0.12 -1.74 16 19 C -0.13 -1.30 4.75 -26.73 -0.13 -1.43 16 20 C 0.11 1.02 1.38 -89.81 -0.12 0.90 16 21 O -0.55 -5.80 13.39 -35.23 -0.47 -6.27 16 22 C -0.17 -1.43 7.32 -25.92 -0.19 -1.62 16 23 C -0.14 -1.14 8.02 -25.92 -0.21 -1.35 16 24 C -0.13 -1.15 7.47 -25.92 -0.19 -1.34 16 25 H 0.01 0.12 6.75 -51.93 -0.35 -0.23 16 26 H 0.09 2.35 6.07 -51.92 -0.32 2.03 16 27 H 0.03 0.71 6.48 -51.93 -0.34 0.38 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.01 0.26 6.51 -51.93 -0.34 -0.07 16 30 H 0.07 1.61 6.41 -51.93 -0.33 1.28 16 31 H 0.04 0.75 6.37 -51.93 -0.33 0.42 16 32 H 0.03 0.52 6.94 -51.93 -0.36 0.16 16 33 H 0.07 1.13 8.00 -51.93 -0.42 0.72 16 34 H 0.37 4.42 9.05 45.56 0.41 4.83 16 35 H 0.07 0.65 8.05 -51.93 -0.42 0.24 16 36 H 0.07 0.66 6.75 -51.93 -0.35 0.31 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.84 7.73 -51.93 -0.40 0.43 16 39 H 0.38 3.06 7.18 45.56 0.33 3.39 16 40 H 0.09 0.72 8.03 -51.93 -0.42 0.30 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 344.38 15.07 5.19 5.19 Total: -1.00 -30.21 344.38 -8.39 -38.61 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.40 Total: 6.62 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -0.76 Total: -14.73 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.48 Total: -37.21 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.92 Total: -14.91 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.21 -8.39 -38.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929832785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.802 kcal (2) G-P(sol) polarization free energy of solvation -30.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds