Wall clock time and date at job start Mon Mar 30 2020 05:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47118 * 2 1 4 4 C 1.50701 * 109.47026 * 240.00229 * 2 1 3 5 5 H 1.08005 * 119.99899 * 240.00079 * 4 2 1 6 6 C 1.37874 * 120.00340 * 60.00073 * 4 2 1 7 7 N 1.31519 * 119.99634 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00325 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.46809 * 59.99882 * 8 6 4 10 10 H 1.48499 * 109.47080 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47094 * 300.00050 * 8 6 4 12 12 N 1.46894 * 109.46967 * 120.00049 * 2 1 3 13 13 C 1.46898 * 111.00226 * 58.95488 * 12 2 1 14 14 C 1.46897 * 111.00170 * 294.99577 * 12 2 1 15 15 C 1.53006 * 109.47346 * 189.99915 * 14 12 2 16 16 H 1.09000 * 109.47050 * 305.00312 * 15 14 12 17 17 O 1.42906 * 109.46752 * 65.00065 * 15 14 12 18 18 C 1.52997 * 109.47164 * 185.00309 * 15 14 12 19 19 C 1.52996 * 109.46894 * 175.00377 * 18 15 14 20 20 C 1.53000 * 109.47246 * 179.97438 * 19 18 15 21 21 O 1.42900 * 112.84828 * 53.80010 * 20 19 18 22 22 C 1.53776 * 113.61448 * 282.49779 * 20 19 18 23 23 C 1.53782 * 87.08371 * 220.01677 * 22 20 19 24 24 C 1.53781 * 87.08040 * 25.42964 * 23 22 20 25 25 H 1.09003 * 109.46859 * 300.00556 * 1 2 3 26 26 H 1.09010 * 109.46937 * 59.99417 * 1 2 3 27 27 H 1.08994 * 109.47616 * 179.97438 * 1 2 3 28 28 H 0.97005 * 119.99856 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47073 * 296.04709 * 13 12 2 30 30 H 1.08998 * 109.47276 * 56.04182 * 13 12 2 31 31 H 1.08997 * 109.47345 * 176.04318 * 13 12 2 32 32 H 1.09004 * 109.46772 * 70.00657 * 14 12 2 33 33 H 1.08992 * 109.47408 * 310.00133 * 14 12 2 34 34 H 0.96701 * 113.99492 * 60.00095 * 17 15 14 35 35 H 1.09001 * 109.47096 * 295.00066 * 18 15 14 36 36 H 1.08994 * 109.47065 * 55.00225 * 18 15 14 37 37 H 1.09001 * 109.46995 * 299.99751 * 19 18 15 38 38 H 1.08998 * 109.47867 * 60.00073 * 19 18 15 39 39 H 0.96699 * 114.00012 * 309.66900 * 21 20 19 40 40 H 1.09003 * 113.61429 * 334.56190 * 22 20 19 41 41 H 1.09002 * 113.61946 * 105.47012 * 22 20 19 42 42 H 1.09006 * 113.61332 * 270.88486 * 23 22 20 43 43 H 1.09002 * 113.61743 * 139.98064 * 23 22 20 44 44 H 1.09000 * 113.61446 * 220.02303 * 24 23 22 45 45 H 1.08998 * 113.61420 * 89.11347 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8256 -2.5202 -4.0077 10 1 1.8259 -0.4205 -5.2205 11 1 3.8062 -1.1209 -4.0082 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6487 0.0392 2.4180 15 6 2.3789 -0.5663 3.6186 16 1 2.1675 -1.6343 3.6716 17 8 3.7861 -0.3659 3.4708 18 6 1.8990 0.1129 4.9029 19 6 2.5351 -0.5756 6.1121 20 6 2.0558 0.1039 7.3964 21 8 0.6315 0.1712 7.4902 22 6 2.7578 1.4413 7.6846 23 6 2.7823 1.0198 9.1633 24 6 2.7321 -0.4352 8.6680 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7089 1.1615 -3.4844 29 1 0.4419 -2.0731 1.3347 30 1 1.8166 -2.5950 0.3318 31 1 1.9617 -2.5868 2.1058 32 1 0.5722 -0.0346 2.5726 33 1 1.9298 1.0869 2.3125 34 1 4.0474 0.5636 3.4169 35 1 2.1893 1.1634 4.8886 36 1 0.8138 0.0366 4.9705 37 1 2.2448 -1.6262 6.1263 38 1 3.6203 -0.4994 6.0445 39 1 0.2020 0.5314 6.7022 40 1 3.7484 1.5199 7.2366 41 1 2.1335 2.3133 7.4895 42 1 1.8946 1.3229 9.7185 43 1 3.7104 1.2751 9.6749 44 1 2.0869 -1.0782 9.2666 45 1 3.7155 -0.8696 8.4887 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929832785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:13 Heat of formation + Delta-G solvation = -107.300533 kcal Electronic energy + Delta-G solvation = -21754.753530 eV Core-core repulsion = 18578.773993 eV Total energy + Delta-G solvation = -3175.979537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77724 -39.55592 -37.59900 -35.59163 -34.66717 -33.50181 -31.09339 -29.38754 -27.42061 -27.05165 -26.62745 -25.14139 -22.93406 -22.05808 -20.94860 -20.55565 -18.25779 -17.59600 -17.20490 -17.02987 -16.80509 -16.30261 -16.04333 -15.83120 -15.24006 -15.07600 -14.60271 -14.47690 -14.23346 -14.01191 -13.42046 -13.38622 -12.98084 -12.97771 -12.79181 -12.67928 -12.62328 -12.50414 -12.20242 -12.02734 -12.00751 -11.93465 -11.85825 -11.69004 -11.46847 -11.17968 -10.96372 -10.67210 -10.49217 -10.34726 -8.77372 -8.11079 -6.21530 1.42568 1.43933 1.51590 2.42922 3.16102 3.18055 3.22070 3.60076 3.72453 3.74870 3.87633 3.93410 4.02881 4.20191 4.31992 4.40038 4.54811 4.60305 4.65877 4.74070 4.80456 4.81880 4.84144 4.86551 4.87892 4.90320 4.95200 5.04890 5.10798 5.15177 5.18492 5.27867 5.33914 5.44604 5.48577 5.54491 5.71327 5.79579 6.20406 6.49106 6.76998 6.80427 6.92160 7.02119 7.47834 8.94874 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.044580 B = 0.003256 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.926629 B = 8598.073701 C = 8740.017950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.005 0.995 4 C -0.517 4.517 5 H 0.054 0.946 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.957 3.043 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.538 5.538 13 C 0.039 3.961 14 C 0.024 3.976 15 C 0.124 3.876 16 H 0.087 0.913 17 O -0.564 6.564 18 C -0.144 4.144 19 C -0.122 4.122 20 C 0.103 3.897 21 O -0.562 6.562 22 C -0.162 4.162 23 C -0.135 4.135 24 C -0.132 4.132 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.016 0.984 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.380 0.620 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.388 0.612 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 0.173 20.448 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.108 3.892 3 H 0.023 0.977 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.783 3.217 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.261 5.261 13 C -0.109 4.109 14 C -0.104 4.104 15 C 0.064 3.936 16 H 0.104 0.896 17 O -0.370 6.370 18 C -0.182 4.182 19 C -0.160 4.160 20 C 0.062 3.938 21 O -0.370 6.370 22 C -0.200 4.200 23 C -0.173 4.173 24 C -0.170 4.170 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.228 0.772 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.238 0.762 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.665 -0.629 20.882 21.060 hybrid contribution -1.061 0.628 -1.729 2.124 sum 1.604 -0.001 19.152 19.219 Atomic orbital electron populations 1.22198 1.00410 0.99063 1.00036 1.19051 0.89894 0.92857 0.87385 0.97686 1.21386 1.30562 1.12457 0.91120 0.92746 1.25674 0.95416 0.95818 1.01777 1.70002 1.37919 1.24156 1.24041 0.85623 0.78717 0.78686 0.78669 1.19736 1.20927 1.19882 1.62156 1.59648 1.02392 1.01932 1.22207 0.96649 0.90670 1.01402 1.22860 0.97803 0.98270 0.91509 1.21817 0.80841 0.99693 0.91234 0.89559 1.86543 1.22523 1.31855 1.96106 1.22169 1.01374 1.00752 0.93891 1.21952 1.01720 0.99551 0.92791 1.22315 0.80697 0.96058 0.94707 1.86429 1.18449 1.87164 1.44993 1.23613 1.01761 0.97474 0.97128 1.22745 1.02318 0.95794 0.96399 1.23106 1.00808 0.97519 0.95539 0.95415 0.92135 0.95151 0.92982 0.96544 0.92912 0.91359 0.94742 0.91724 0.77165 0.90286 0.90394 0.92156 0.89994 0.76199 0.88488 0.91211 0.90730 0.90246 0.91616 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.59 8.27 71.98 0.60 -7.00 16 2 C 0.22 10.89 2.34 44.17 0.10 11.00 16 3 H 0.01 0.29 8.03 -2.39 -0.02 0.27 16 4 C -0.52 -28.70 7.88 25.60 0.20 -28.50 16 5 H 0.05 3.04 6.77 -2.91 -0.02 3.02 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -53.06 11.32 21.45 0.24 -52.81 16 8 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 N -0.54 -22.67 4.69 -901.49 -4.23 -26.90 16 13 C 0.04 1.52 8.56 127.69 1.09 2.61 16 14 C 0.02 0.79 4.03 86.31 0.35 1.14 16 15 C 0.12 3.21 2.92 30.60 0.09 3.30 16 16 H 0.09 2.40 6.34 -2.39 -0.02 2.38 16 17 O -0.56 -15.87 12.82 -148.98 -1.91 -17.78 16 18 C -0.14 -2.66 4.46 30.59 0.14 -2.53 16 19 C -0.12 -2.19 4.75 30.59 0.15 -2.04 16 20 C 0.10 1.77 1.38 -10.27 -0.01 1.76 16 21 O -0.56 -10.96 13.39 -148.98 -1.99 -12.95 16 22 C -0.16 -2.44 7.32 31.12 0.23 -2.21 16 23 C -0.14 -2.01 8.02 31.12 0.25 -1.76 16 24 C -0.13 -2.13 7.47 31.12 0.23 -1.90 16 25 H 0.03 1.16 6.75 -2.39 -0.02 1.15 16 26 H 0.06 3.26 6.07 -2.38 -0.01 3.25 16 27 H 0.03 1.41 6.48 -2.39 -0.02 1.40 16 28 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 29 H 0.02 0.62 6.51 -2.39 -0.02 0.60 16 30 H 0.05 2.26 6.41 -2.39 -0.02 2.25 16 31 H 0.07 2.29 6.37 -2.39 -0.02 2.27 16 32 H 0.03 1.11 6.94 -2.39 -0.02 1.10 16 33 H 0.06 2.13 8.00 -2.39 -0.02 2.11 16 34 H 0.38 8.47 9.05 -74.06 -0.67 7.80 16 35 H 0.08 1.31 8.05 -2.39 -0.02 1.29 16 36 H 0.08 1.31 6.75 -2.39 -0.02 1.30 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.48 7.73 -2.39 -0.02 1.46 16 39 H 0.39 5.51 7.18 -74.06 -0.53 4.98 16 40 H 0.10 1.31 8.03 -2.39 -0.02 1.29 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.10 1.42 8.10 -2.39 -0.02 1.40 16 Total: -1.00 -63.99 344.38 -2.23 -66.22 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -0.22 Total: 23.20 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 3.86 Total: -25.04 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -3.99 Total: -79.71 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -3.91 Total: -30.73 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -63.99 -2.23 -66.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929832785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.085 kcal (2) G-P(sol) polarization free energy of solvation -63.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds