Wall clock time and date at job start Mon Mar 30 2020 04:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 N 1.46292 * 114.00044 * 2 1 4 4 C 1.46898 * 111.00114 * 120.00325 * 3 2 1 5 5 C 1.53006 * 109.47006 * 298.95053 * 4 3 2 6 6 H 1.09001 * 109.47002 * 60.00218 * 5 4 3 7 7 O 1.42895 * 109.47000 * 300.00187 * 5 4 3 8 8 C 1.50698 * 109.47184 * 179.97438 * 5 4 3 9 9 H 1.08005 * 119.99819 * 0.02562 * 8 5 4 10 10 C 1.37875 * 120.00046 * 179.97438 * 8 5 4 11 11 N 1.31511 * 120.00192 * 0.02562 * 10 8 5 12 12 Si 1.86798 * 119.99979 * 180.02562 * 10 8 5 13 13 H 1.48506 * 109.47297 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47261 * 60.00310 * 12 10 8 15 15 H 1.48500 * 109.47454 * 300.00304 * 12 10 8 16 16 C 1.46898 * 110.99925 * 243.95666 * 3 2 1 17 17 C 1.53001 * 109.47456 * 66.04633 * 16 3 2 18 18 H 1.08997 * 109.46687 * 305.00156 * 17 16 3 19 19 C 1.53003 * 109.47060 * 65.00146 * 17 16 3 20 20 C 1.52998 * 109.47234 * 180.02562 * 19 17 16 21 21 C 1.52995 * 109.46673 * 299.99933 * 20 19 17 22 22 C 1.53000 * 109.47697 * 60.00304 * 21 20 19 23 23 H 1.08997 * 109.47325 * 59.99238 * 22 21 20 24 24 C 1.52995 * 109.47412 * 179.97438 * 22 21 20 25 25 C 1.52995 * 109.47384 * 185.00059 * 17 16 3 26 26 H 1.09001 * 109.47195 * 59.99555 * 1 2 3 27 27 H 1.08997 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46731 * 299.99731 * 1 2 3 29 29 H 1.09001 * 109.47062 * 178.95307 * 4 3 2 30 30 H 1.09001 * 109.47392 * 58.94755 * 4 3 2 31 31 H 0.96696 * 113.99976 * 299.99010 * 7 5 4 32 32 H 0.97001 * 119.99934 * 359.97438 * 11 10 8 33 33 H 1.09007 * 109.47442 * 186.04721 * 16 3 2 34 34 H 1.09002 * 109.47216 * 306.04423 * 16 3 2 35 35 H 1.09004 * 109.46966 * 300.00325 * 19 17 16 36 36 H 1.08994 * 109.47200 * 59.99664 * 19 17 16 37 37 H 1.08994 * 109.46959 * 179.97438 * 20 19 17 38 38 H 1.09006 * 109.46884 * 59.99566 * 20 19 17 39 39 H 1.08997 * 109.47355 * 299.99561 * 21 20 19 40 40 H 1.09003 * 109.47168 * 179.97438 * 21 20 19 41 41 H 1.09001 * 109.47305 * 179.97438 * 24 22 21 42 42 H 1.08997 * 109.47059 * 300.00092 * 24 22 21 43 43 H 1.09007 * 109.47047 * 59.99920 * 24 22 21 44 44 H 1.09007 * 109.47047 * 300.00176 * 25 17 16 45 45 H 1.09001 * 109.47305 * 59.99685 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0241 1.3364 0.0000 4 6 2.8647 1.5384 1.1876 5 6 2.0071 1.4068 2.4479 6 1 1.5624 0.4122 2.4824 7 8 0.9715 2.3911 2.4242 8 6 2.8695 1.6134 3.6663 9 1 3.9239 1.8186 3.5531 10 6 2.3125 1.5416 4.9254 11 7 1.0286 1.2923 5.0633 12 14 3.3814 1.7984 6.4357 13 1 2.5491 1.6705 7.6589 14 1 3.9877 3.1532 6.3884 15 1 4.4574 0.7752 6.4605 16 6 2.7883 1.5724 -1.2322 17 6 1.8334 1.5992 -2.4274 18 1 1.2504 0.6785 -2.4471 19 6 0.8906 2.7974 -2.3001 20 6 -0.0647 2.8238 -3.4950 21 6 0.7414 2.9444 -4.7897 22 6 1.6843 1.7462 -4.9171 23 1 1.1012 0.8255 -4.9364 24 6 2.4899 1.8665 -6.2121 25 6 2.6399 1.7201 -3.7219 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.3094 2.5330 1.1531 30 1 3.6547 0.7876 1.2057 31 1 1.2951 3.3018 2.3933 32 1 0.4734 1.1593 4.2790 33 1 3.3074 2.5283 -1.1604 34 1 3.5166 0.7727 -1.3668 35 1 0.3160 2.7113 -1.3778 36 1 1.4736 3.7181 -2.2802 37 1 -0.7367 3.6772 -3.4041 38 1 -0.6478 1.9030 -3.5144 39 1 1.3245 3.8651 -4.7703 40 1 0.0609 2.9627 -5.6410 41 1 3.1620 1.0131 -6.3026 42 1 1.8091 1.8851 -7.0631 43 1 3.0731 2.7873 -6.1931 44 1 3.2231 2.6408 -3.7020 45 1 3.3117 0.8665 -3.8125 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930527668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:37 Heat of formation + Delta-G solvation = -89.499014 kcal Electronic energy + Delta-G solvation = -22331.541320 eV Core-core repulsion = 19156.333715 eV Total energy + Delta-G solvation = -3175.207605 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.14613 -37.15159 -35.50618 -33.78571 -32.30953 -32.03467 -31.14651 -28.00031 -26.47666 -25.69819 -24.87726 -22.74566 -21.98323 -20.75400 -20.25783 -19.72845 -17.27101 -16.25603 -15.55347 -15.28818 -15.06640 -14.42781 -14.24259 -14.12592 -13.81804 -13.74709 -13.69014 -13.46161 -12.98813 -12.55593 -12.46535 -12.31273 -12.01088 -11.82931 -11.63756 -11.43394 -11.31506 -11.00450 -10.94338 -10.76296 -10.72811 -10.35517 -10.10131 -10.07819 -10.00091 -9.97476 -9.37322 -9.18664 -8.43975 -8.11101 -7.93956 -6.32536 -4.15636 3.17537 3.43237 3.44657 3.63795 4.49708 4.55306 4.61758 4.73015 5.01035 5.11388 5.19998 5.36365 5.38478 5.42216 5.47289 5.51886 5.59644 5.62178 5.70634 5.77423 5.82602 5.85012 5.93978 5.96548 5.97720 5.99780 6.04235 6.15551 6.19383 6.23369 6.24856 6.32242 6.35037 6.39264 6.53884 6.61289 6.65916 7.27417 7.50518 7.64990 8.04272 8.37872 8.88976 9.23408 9.70676 11.07808 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.036979 B = 0.003897 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.008532 B = 7182.979112 C = 7360.602997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.266 6.266 3 N -0.349 5.349 4 C 0.024 3.976 5 C 0.225 3.775 6 H 0.053 0.947 7 O -0.573 6.573 8 C -0.652 4.652 9 H 0.047 0.953 10 C 0.035 3.965 11 N -0.892 5.892 12 Si 1.066 2.934 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.289 1.289 16 C 0.042 3.958 17 C -0.078 4.078 18 H 0.072 0.928 19 C -0.108 4.108 20 C -0.120 4.120 21 C -0.113 4.113 22 C -0.091 4.091 23 H 0.067 0.933 24 C -0.147 4.147 25 C -0.108 4.108 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.350 0.650 32 H 0.285 0.715 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.775 2.316 -19.446 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.271 6.271 3 N -0.118 5.118 4 C -0.104 4.104 5 C 0.167 3.833 6 H 0.071 0.929 7 O -0.376 6.376 8 C -0.691 4.691 9 H 0.065 0.935 10 C -0.173 4.173 11 N -0.526 5.526 12 Si 0.895 3.105 13 H -0.207 1.207 14 H -0.214 1.214 15 H -0.215 1.215 16 C -0.087 4.087 17 C -0.097 4.097 18 H 0.090 0.910 19 C -0.146 4.146 20 C -0.157 4.157 21 C -0.150 4.150 22 C -0.109 4.109 23 H 0.086 0.914 24 C -0.204 4.204 25 C -0.146 4.146 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.194 0.806 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.065 1.938 -17.764 17.869 hybrid contribution 1.190 -0.067 -1.765 2.130 sum 1.255 1.871 -19.529 19.658 Atomic orbital electron populations 1.22554 0.81374 1.00526 1.00812 1.90599 1.20367 1.19307 1.96790 1.67759 1.34097 1.07720 1.02175 1.23258 0.95644 1.00087 0.91364 1.19402 0.85631 0.89278 0.88955 0.92909 1.86471 1.37088 1.17096 1.96952 1.22435 0.96351 1.57228 0.93057 0.93468 1.25752 0.97707 0.93035 1.00854 1.70624 1.05359 1.41153 1.35475 0.83610 0.74810 0.76391 0.75725 1.20741 1.21440 1.21533 1.22489 0.95117 1.00590 0.90486 1.21068 0.96403 0.99481 0.92703 0.90969 1.21513 0.97377 0.97347 0.98320 1.21549 0.97917 1.01505 0.94772 1.21593 0.97867 0.98027 0.97535 1.21116 0.96541 0.98793 0.94476 0.91425 1.21833 0.99899 1.01624 0.97056 1.21629 0.97536 1.01649 0.93801 0.94617 0.90751 0.92633 0.90198 0.94363 0.80588 0.90346 0.89939 0.94290 0.90487 0.92551 0.92260 0.92330 0.92161 0.92533 0.92858 0.92931 0.92809 0.92071 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 11.33 101.05 1.15 1.92 16 2 O -0.27 -5.29 9.63 -13.92 -0.13 -5.42 16 3 N -0.35 -6.50 4.06 -113.77 -0.46 -6.96 16 4 C 0.02 0.51 4.89 -3.82 -0.02 0.49 16 5 C 0.22 5.75 2.44 -27.88 -0.07 5.68 16 6 H 0.05 1.51 7.54 -51.93 -0.39 1.12 16 7 O -0.57 -14.40 11.88 -35.23 -0.42 -14.82 16 8 C -0.65 -18.32 8.76 -34.44 -0.30 -18.63 16 9 H 0.05 1.30 7.74 -52.48 -0.41 0.90 16 10 C 0.04 1.02 5.40 -17.82 -0.10 0.93 16 11 N -0.89 -27.42 13.53 55.43 0.75 -26.67 16 12 Si 1.07 25.15 29.90 -169.99 -5.08 20.07 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 15 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 16 C 0.04 0.63 4.66 -3.82 -0.02 0.61 16 17 C -0.08 -1.00 2.24 -90.62 -0.20 -1.20 16 18 H 0.07 1.03 7.00 -51.93 -0.36 0.67 16 19 C -0.11 -1.35 5.09 -26.73 -0.14 -1.49 16 20 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 21 C -0.11 -1.05 5.20 -26.73 -0.14 -1.19 16 22 C -0.09 -0.86 2.72 -90.60 -0.25 -1.11 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 C -0.15 -1.19 9.19 37.16 0.34 -0.85 16 25 C -0.11 -1.15 4.49 -26.71 -0.12 -1.27 16 26 H 0.04 0.55 7.41 -51.93 -0.39 0.16 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.60 8.03 -51.93 -0.42 1.18 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.35 7.97 9.04 45.56 0.41 8.38 16 32 H 0.28 8.92 6.47 -40.82 -0.26 8.66 16 33 H 0.08 1.16 8.00 -51.93 -0.42 0.75 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.15 7.57 -51.93 -0.39 0.75 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 44 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 353.60 15.07 5.33 5.33 Total: -1.00 -30.68 353.60 -7.80 -38.47 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -7.76 Total: 7.54 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -0.02 Total: -17.53 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.29 Total: -33.63 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.55 Total: -20.24 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.68 -7.80 -38.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930527668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.026 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds