Wall clock time and date at job start Mon Mar 30 2020 04:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 N 1.46292 * 114.00044 * 2 1 4 4 C 1.46898 * 111.00114 * 120.00325 * 3 2 1 5 5 C 1.53006 * 109.47006 * 298.95053 * 4 3 2 6 6 H 1.09001 * 109.47002 * 60.00218 * 5 4 3 7 7 O 1.42895 * 109.47000 * 300.00187 * 5 4 3 8 8 C 1.50698 * 109.47184 * 179.97438 * 5 4 3 9 9 H 1.08005 * 119.99819 * 0.02562 * 8 5 4 10 10 C 1.37875 * 120.00046 * 179.97438 * 8 5 4 11 11 N 1.31511 * 120.00192 * 0.02562 * 10 8 5 12 12 Si 1.86798 * 119.99979 * 180.02562 * 10 8 5 13 13 H 1.48506 * 109.47297 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47261 * 60.00310 * 12 10 8 15 15 H 1.48500 * 109.47454 * 300.00304 * 12 10 8 16 16 C 1.46898 * 110.99925 * 243.95666 * 3 2 1 17 17 C 1.53001 * 109.47456 * 66.04633 * 16 3 2 18 18 H 1.08997 * 109.46687 * 305.00156 * 17 16 3 19 19 C 1.53003 * 109.47060 * 65.00146 * 17 16 3 20 20 C 1.52998 * 109.47234 * 180.02562 * 19 17 16 21 21 C 1.52995 * 109.46673 * 299.99933 * 20 19 17 22 22 C 1.53000 * 109.47697 * 60.00304 * 21 20 19 23 23 H 1.08997 * 109.47325 * 59.99238 * 22 21 20 24 24 C 1.52995 * 109.47412 * 179.97438 * 22 21 20 25 25 C 1.52995 * 109.47384 * 185.00059 * 17 16 3 26 26 H 1.09001 * 109.47195 * 59.99555 * 1 2 3 27 27 H 1.08997 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46731 * 299.99731 * 1 2 3 29 29 H 1.09001 * 109.47062 * 178.95307 * 4 3 2 30 30 H 1.09001 * 109.47392 * 58.94755 * 4 3 2 31 31 H 0.96696 * 113.99976 * 299.99010 * 7 5 4 32 32 H 0.97001 * 119.99934 * 359.97438 * 11 10 8 33 33 H 1.09007 * 109.47442 * 186.04721 * 16 3 2 34 34 H 1.09002 * 109.47216 * 306.04423 * 16 3 2 35 35 H 1.09004 * 109.46966 * 300.00325 * 19 17 16 36 36 H 1.08994 * 109.47200 * 59.99664 * 19 17 16 37 37 H 1.08994 * 109.46959 * 179.97438 * 20 19 17 38 38 H 1.09006 * 109.46884 * 59.99566 * 20 19 17 39 39 H 1.08997 * 109.47355 * 299.99561 * 21 20 19 40 40 H 1.09003 * 109.47168 * 179.97438 * 21 20 19 41 41 H 1.09001 * 109.47305 * 179.97438 * 24 22 21 42 42 H 1.08997 * 109.47059 * 300.00092 * 24 22 21 43 43 H 1.09007 * 109.47047 * 59.99920 * 24 22 21 44 44 H 1.09007 * 109.47047 * 300.00176 * 25 17 16 45 45 H 1.09001 * 109.47305 * 59.99685 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0241 1.3364 0.0000 4 6 2.8647 1.5384 1.1876 5 6 2.0071 1.4068 2.4479 6 1 1.5624 0.4122 2.4824 7 8 0.9715 2.3911 2.4242 8 6 2.8695 1.6134 3.6663 9 1 3.9239 1.8186 3.5531 10 6 2.3125 1.5416 4.9254 11 7 1.0286 1.2923 5.0633 12 14 3.3814 1.7984 6.4357 13 1 2.5491 1.6705 7.6589 14 1 3.9877 3.1532 6.3884 15 1 4.4574 0.7752 6.4605 16 6 2.7883 1.5724 -1.2322 17 6 1.8334 1.5992 -2.4274 18 1 1.2504 0.6785 -2.4471 19 6 0.8906 2.7974 -2.3001 20 6 -0.0647 2.8238 -3.4950 21 6 0.7414 2.9444 -4.7897 22 6 1.6843 1.7462 -4.9171 23 1 1.1012 0.8255 -4.9364 24 6 2.4899 1.8665 -6.2121 25 6 2.6399 1.7201 -3.7219 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.3094 2.5330 1.1531 30 1 3.6547 0.7876 1.2057 31 1 1.2951 3.3018 2.3933 32 1 0.4734 1.1593 4.2790 33 1 3.3074 2.5283 -1.1604 34 1 3.5166 0.7727 -1.3668 35 1 0.3160 2.7113 -1.3778 36 1 1.4736 3.7181 -2.2802 37 1 -0.7367 3.6772 -3.4041 38 1 -0.6478 1.9030 -3.5144 39 1 1.3245 3.8651 -4.7703 40 1 0.0609 2.9627 -5.6410 41 1 3.1620 1.0131 -6.3026 42 1 1.8091 1.8851 -7.0631 43 1 3.0731 2.7873 -6.1931 44 1 3.2231 2.6408 -3.7020 45 1 3.3117 0.8665 -3.8125 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930527668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:37 Heat of formation + Delta-G solvation = -109.039289 kcal Electronic energy + Delta-G solvation = -22332.388650 eV Core-core repulsion = 19156.333715 eV Total energy + Delta-G solvation = -3176.054935 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.14773 -38.75321 -37.30871 -35.07119 -34.23576 -33.36659 -32.29313 -29.72479 -27.36119 -26.98177 -26.63801 -24.40452 -22.88650 -22.57740 -21.27670 -20.63449 -19.37664 -17.80066 -17.15138 -16.70218 -16.19550 -15.86627 -15.65748 -15.53048 -15.27305 -15.19688 -14.87945 -14.62832 -14.41757 -14.29545 -13.79315 -13.54325 -13.20570 -13.02474 -12.78792 -12.63389 -12.58380 -12.49306 -12.19454 -12.08159 -11.93392 -11.85199 -11.63873 -11.30767 -11.24255 -10.97236 -10.87407 -10.83423 -10.62709 -10.07187 -9.58247 -8.61563 -6.46429 1.53083 1.61169 1.68750 1.80577 2.56905 3.17761 3.47038 3.77331 3.86096 3.93340 4.09648 4.14592 4.28119 4.33212 4.36508 4.42979 4.52621 4.55332 4.58647 4.61195 4.66087 4.73112 4.75944 4.80310 4.82394 4.88455 4.88968 4.99201 5.03517 5.11828 5.21956 5.28612 5.40124 5.41214 5.48005 5.48752 5.53308 5.65150 5.75051 5.90741 6.05787 6.15041 6.56065 7.24854 7.51935 8.76292 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.036979 B = 0.003897 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.008532 B = 7182.979112 C = 7360.602997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.289 6.289 3 N -0.348 5.348 4 C 0.037 3.963 5 C 0.230 3.770 6 H 0.013 0.987 7 O -0.580 6.580 8 C -0.663 4.663 9 H 0.052 0.948 10 C -0.017 4.017 11 N -0.920 5.920 12 Si 1.117 2.883 13 H -0.286 1.286 14 H -0.266 1.266 15 H -0.273 1.273 16 C 0.040 3.960 17 C -0.069 4.069 18 H 0.056 0.944 19 C -0.104 4.104 20 C -0.117 4.117 21 C -0.109 4.109 22 C -0.089 4.089 23 H 0.061 0.939 24 C -0.144 4.144 25 C -0.103 4.103 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.022 0.978 29 H 0.097 0.903 30 H 0.028 0.972 31 H 0.360 0.640 32 H 0.267 0.733 33 H 0.098 0.902 34 H 0.037 0.963 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.988 3.274 -20.960 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.293 6.293 3 N -0.118 5.118 4 C -0.091 4.091 5 C 0.172 3.828 6 H 0.031 0.969 7 O -0.384 6.384 8 C -0.701 4.701 9 H 0.070 0.930 10 C -0.219 4.219 11 N -0.555 5.555 12 Si 0.938 3.062 13 H -0.211 1.211 14 H -0.191 1.191 15 H -0.198 1.198 16 C -0.088 4.088 17 C -0.088 4.088 18 H 0.075 0.925 19 C -0.141 4.141 20 C -0.155 4.155 21 C -0.146 4.146 22 C -0.108 4.108 23 H 0.080 0.920 24 C -0.201 4.201 25 C -0.141 4.141 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.041 0.959 29 H 0.115 0.885 30 H 0.046 0.954 31 H 0.206 0.794 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.282 2.898 -19.316 19.574 hybrid contribution 0.783 -0.372 -1.354 1.608 sum 2.065 2.526 -20.670 20.926 Atomic orbital electron populations 1.22581 0.80278 1.01784 0.99993 1.90564 1.21596 1.20279 1.96820 1.67749 1.34142 1.07215 1.02658 1.22953 0.94614 1.00712 0.90855 1.19134 0.85425 0.87568 0.90624 0.96906 1.86427 1.37172 1.17747 1.97082 1.22847 0.96860 1.56265 0.94161 0.93002 1.27315 0.97990 0.91988 1.04593 1.70769 1.06454 1.43771 1.34518 0.82964 0.73534 0.77826 0.71882 1.21141 1.19064 1.19815 1.22667 0.95432 1.01116 0.89584 1.20992 0.96066 0.98892 0.92869 0.92510 1.21442 0.97411 0.97306 0.97983 1.21524 0.97704 1.01589 0.94674 1.21570 0.97904 0.98099 0.97035 1.21101 0.96404 0.98649 0.94636 0.92002 1.21798 0.99941 1.01945 0.96399 1.21593 0.97524 1.02089 0.92892 0.92796 0.88534 0.95895 0.88508 0.95365 0.79404 0.92245 0.88415 0.94504 0.93292 0.92107 0.91688 0.92749 0.91679 0.91246 0.92706 0.92031 0.92346 0.91262 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.80 11.33 113.37 1.29 3.08 16 2 O -0.29 -11.67 9.63 -50.14 -0.48 -12.16 16 3 N -0.35 -13.03 4.06 -513.87 -2.08 -15.11 16 4 C 0.04 1.57 4.89 86.31 0.42 1.99 16 5 C 0.23 12.05 2.44 29.85 0.07 12.12 16 6 H 0.01 0.79 7.54 -2.39 -0.02 0.77 16 7 O -0.58 -29.88 11.88 -148.98 -1.77 -31.65 16 8 C -0.66 -37.45 8.76 25.60 0.22 -37.23 16 9 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 10 C -0.02 -0.97 5.40 84.65 0.46 -0.51 16 11 N -0.92 -57.76 13.53 21.45 0.29 -57.47 16 12 Si 1.12 50.08 29.90 68.60 2.05 52.13 16 13 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 14 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 15 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 16 C 0.04 1.16 4.66 86.30 0.40 1.57 16 17 C -0.07 -1.70 2.24 -10.79 -0.02 -1.72 16 18 H 0.06 1.58 7.00 -2.39 -0.02 1.56 16 19 C -0.10 -2.49 5.09 30.59 0.16 -2.34 16 20 C -0.12 -2.30 5.92 30.59 0.18 -2.12 16 21 C -0.11 -1.75 5.20 30.59 0.16 -1.60 16 22 C -0.09 -1.49 2.72 -10.78 -0.03 -1.51 16 23 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 24 C -0.14 -1.93 9.19 71.98 0.66 -1.27 16 25 C -0.10 -1.98 4.49 30.61 0.14 -1.84 16 26 H 0.05 1.67 7.41 -2.39 -0.02 1.65 16 27 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 28 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.10 3.77 8.03 -2.39 -0.02 3.75 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.36 16.57 9.04 -74.06 -0.67 15.91 16 32 H 0.27 17.39 6.47 -92.71 -0.60 16.79 16 33 H 0.10 2.57 8.00 -2.38 -0.02 2.55 16 34 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 1.45 7.57 -2.39 -0.02 1.43 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 42 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -66.82 353.60 2.54 -64.28 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.43 Total: 31.36 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: 4.11 Total: -31.38 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -1.79 Total: -72.59 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -2.25 Total: -43.80 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.05 Total: 52.13 kcal Total: -66.82 2.54 -64.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930527668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.756 kcal (2) G-P(sol) polarization free energy of solvation -66.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds