Wall clock time and date at job start Mon Mar 30 2020 04:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 N 1.46302 * 113.99839 * 2 1 4 4 C 1.46901 * 110.99521 * 232.96869 * 3 2 1 5 5 C 1.53003 * 109.47023 * 66.04517 * 4 3 2 6 6 H 1.09005 * 109.47065 * 59.99610 * 5 4 3 7 7 O 1.42897 * 109.47498 * 299.99916 * 5 4 3 8 8 C 1.50703 * 109.47258 * 179.97438 * 5 4 3 9 9 H 1.08003 * 119.99815 * 359.97438 * 8 5 4 10 10 C 1.37874 * 119.99847 * 180.02562 * 8 5 4 11 11 N 1.31507 * 120.00284 * 359.97438 * 10 8 5 12 12 Si 1.86806 * 119.99736 * 180.02562 * 10 8 5 13 13 H 1.48494 * 109.47357 * 89.99322 * 12 10 8 14 14 H 1.48500 * 109.46914 * 209.99625 * 12 10 8 15 15 H 1.48501 * 109.46890 * 329.99519 * 12 10 8 16 16 C 1.46900 * 111.00015 * 109.01815 * 3 2 1 17 17 C 1.53003 * 109.46832 * 191.30163 * 16 3 2 18 18 H 1.08994 * 109.47117 * 304.40789 * 17 16 3 19 19 C 1.53001 * 109.46915 * 64.40528 * 17 16 3 20 20 C 1.53001 * 109.47163 * 179.97438 * 19 17 16 21 21 C 1.52996 * 109.47086 * 300.00343 * 20 19 17 22 22 C 1.52992 * 109.47299 * 59.99985 * 21 20 19 23 23 H 1.09008 * 109.47575 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.47636 * 59.99878 * 22 21 20 25 25 C 1.52990 * 109.47265 * 184.40505 * 17 16 3 26 26 H 1.08995 * 109.47378 * 304.83856 * 1 2 3 27 27 H 1.08997 * 109.46304 * 64.84290 * 1 2 3 28 28 H 1.09000 * 109.46752 * 184.83489 * 1 2 3 29 29 H 1.08996 * 109.47725 * 306.04512 * 4 3 2 30 30 H 1.09002 * 109.47206 * 186.04187 * 4 3 2 31 31 H 0.96701 * 113.99941 * 300.00064 * 7 5 4 32 32 H 0.97003 * 120.00147 * 180.02562 * 11 10 8 33 33 H 1.08992 * 109.47163 * 311.29854 * 16 3 2 34 34 H 1.08996 * 109.47409 * 71.30798 * 16 3 2 35 35 H 1.08994 * 109.47479 * 300.00110 * 19 17 16 36 36 H 1.09004 * 109.47131 * 60.00164 * 19 17 16 37 37 H 1.09004 * 109.46736 * 60.00200 * 20 19 17 38 38 H 1.08997 * 109.47550 * 179.97438 * 20 19 17 39 39 H 1.09004 * 109.47065 * 179.97438 * 21 20 19 40 40 H 1.08994 * 109.47302 * 299.99652 * 21 20 19 41 41 H 1.08996 * 109.46991 * 59.99698 * 24 22 21 42 42 H 1.08993 * 109.47844 * 180.02562 * 24 22 21 43 43 H 1.09009 * 109.47059 * 300.00428 * 24 22 21 44 44 H 1.09006 * 109.47456 * 300.00561 * 25 17 16 45 45 H 1.09001 * 109.47339 * 60.00405 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3366 0.0000 4 6 2.9927 1.4815 -1.0949 5 6 2.2606 1.4088 -2.4364 6 1 1.5254 2.2116 -2.4930 7 8 1.5984 0.1477 -2.5501 8 6 3.2542 1.5581 -3.5597 9 1 4.3029 1.6919 -3.3387 10 6 2.8243 1.5250 -4.8692 11 7 1.5473 1.3626 -5.1382 12 14 4.0560 1.7093 -6.2615 13 1 4.5630 0.3701 -6.6545 14 1 3.3940 2.3495 -7.4265 15 1 5.1902 2.5551 -5.8103 16 6 2.6465 1.6357 1.2966 17 6 3.0045 3.1219 1.3595 18 1 3.6401 3.3787 0.5121 19 6 1.7239 3.9576 1.3083 20 6 2.0819 5.4438 1.3718 21 6 2.8281 5.7333 2.6757 22 6 4.1086 4.8977 2.7269 23 1 4.6405 5.1043 3.6557 24 6 5.0011 5.2586 1.5378 25 6 3.7509 3.4120 2.6631 26 1 -0.3634 0.5870 0.8434 27 1 -0.3632 0.4369 -0.9302 28 1 -0.3633 -1.0240 0.0866 29 1 3.7279 0.6788 -1.0383 30 1 3.4978 2.4435 -1.0082 31 1 2.1929 -0.6139 -2.5079 32 1 1.2449 1.3390 -6.0596 33 1 1.9485 1.3959 2.0986 34 1 3.5512 1.0389 1.4117 35 1 1.1921 3.7511 0.3796 36 1 1.0883 3.7008 2.1558 37 1 2.7177 5.7009 0.5246 38 1 1.1697 6.0392 1.3349 39 1 3.0835 6.7921 2.7208 40 1 2.1924 5.4763 3.5229 41 1 5.2561 6.3173 1.5830 42 1 5.9132 4.6629 1.5739 43 1 4.4695 5.0523 0.6087 44 1 3.1154 3.1551 3.5106 45 1 4.6633 2.8166 2.6996 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930527671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:44 Heat of formation + Delta-G solvation = -75.954002 kcal Electronic energy + Delta-G solvation = -22650.091997 eV Core-core repulsion = 19475.471747 eV Total energy + Delta-G solvation = -3174.620249 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.37865 -36.97154 -35.05588 -33.83699 -32.02298 -31.55308 -30.75066 -28.03112 -26.73883 -25.66137 -25.14504 -22.93145 -22.19531 -21.00022 -19.88968 -18.54770 -16.90058 -16.25624 -15.49807 -15.07206 -14.74884 -14.54083 -14.43328 -14.07659 -13.84271 -13.74488 -13.40103 -13.28430 -12.86246 -12.62018 -12.36651 -12.12099 -11.84393 -11.48280 -11.42407 -11.16553 -11.09070 -10.97045 -10.90764 -10.85915 -10.80385 -10.52720 -10.09826 -9.98179 -9.89610 -9.83194 -9.17685 -8.93505 -8.53383 -8.08647 -7.82344 -5.95878 -4.13873 3.27262 3.29865 3.36906 3.39482 4.41885 4.71778 4.74088 4.76392 5.10752 5.27403 5.31712 5.38492 5.42939 5.43920 5.53633 5.65119 5.68118 5.72820 5.81380 5.88188 5.95690 6.01997 6.03530 6.04473 6.07845 6.12498 6.24190 6.26493 6.30403 6.35056 6.42166 6.45934 6.55093 6.61201 6.65582 6.69537 6.89942 7.40973 7.67699 7.81378 7.99241 8.25814 8.89402 9.51592 9.68371 11.08192 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017183 B = 0.005535 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.161248 B = 5057.857067 C = 6060.504013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.253 6.253 3 N -0.356 5.356 4 C 0.019 3.981 5 C 0.242 3.758 6 H 0.058 0.942 7 O -0.552 6.552 8 C -0.573 4.573 9 H 0.053 0.947 10 C 0.081 3.919 11 N -0.858 5.858 12 Si 0.887 3.113 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.042 3.958 17 C -0.082 4.082 18 H 0.080 0.920 19 C -0.106 4.106 20 C -0.123 4.123 21 C -0.113 4.113 22 C -0.089 4.089 23 H 0.064 0.936 24 C -0.154 4.154 25 C -0.107 4.107 26 H 0.025 0.975 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.083 0.917 31 H 0.340 0.660 32 H 0.259 0.741 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 5.610 15.620 16.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.258 6.258 3 N -0.125 5.125 4 C -0.109 4.109 5 C 0.184 3.816 6 H 0.075 0.925 7 O -0.353 6.353 8 C -0.611 4.611 9 H 0.071 0.929 10 C -0.125 4.125 11 N -0.493 5.493 12 Si 0.714 3.286 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.199 1.199 16 C -0.087 4.087 17 C -0.101 4.101 18 H 0.098 0.902 19 C -0.144 4.144 20 C -0.161 4.161 21 C -0.151 4.151 22 C -0.107 4.107 23 H 0.083 0.917 24 C -0.211 4.211 25 C -0.145 4.145 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.184 0.816 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.234 6.122 15.355 16.576 hybrid contribution 1.792 -0.662 -0.609 2.005 sum 3.027 5.460 14.746 16.013 Atomic orbital electron populations 1.22393 0.81605 1.00097 1.00207 1.90616 1.20176 1.18226 1.96741 1.67617 1.33612 1.08488 1.02761 1.23453 0.93686 1.00045 0.93717 1.19239 0.91500 0.84503 0.86405 0.92467 1.86540 1.37601 1.15060 1.96140 1.21644 0.94129 1.53668 0.91678 0.92896 1.24991 0.94869 0.93923 0.98698 1.70080 1.13656 1.46597 1.19008 0.86713 0.81550 0.78278 0.82041 1.20610 1.21142 1.19907 1.22447 0.97876 0.95590 0.92787 1.21220 0.97406 0.93246 0.98184 0.90222 1.21478 0.96708 0.93446 1.02750 1.21601 0.99859 0.96930 0.97666 1.21562 0.96332 0.98988 0.98183 1.21050 0.96069 0.95088 0.98514 0.91732 1.21967 0.99339 1.00767 0.98999 1.21560 0.99791 0.95645 0.97476 0.95610 0.92679 0.90918 0.94965 0.89857 0.81645 0.93085 0.91115 0.94886 0.90402 0.92700 0.91588 0.92352 0.92494 0.92334 0.93078 0.92955 0.91513 0.92135 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.95 11.10 101.05 1.12 2.08 16 2 O -0.25 -5.04 9.34 -34.84 -0.33 -5.37 16 3 N -0.36 -6.72 4.19 -113.78 -0.48 -7.20 16 4 C 0.02 0.39 4.88 -3.82 -0.02 0.37 16 5 C 0.24 6.18 3.09 -27.88 -0.09 6.09 16 6 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 7 O -0.55 -14.40 10.12 -56.14 -0.57 -14.97 16 8 C -0.57 -15.77 8.76 -34.44 -0.30 -16.07 16 9 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 10 C 0.08 2.29 5.40 -17.82 -0.10 2.19 16 11 N -0.86 -25.49 12.84 55.43 0.71 -24.78 16 12 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 C 0.04 0.64 4.83 -3.82 -0.02 0.62 16 17 C -0.08 -1.09 1.86 -90.62 -0.17 -1.25 16 18 H 0.08 1.17 4.53 -51.93 -0.24 0.93 16 19 C -0.11 -1.40 5.09 -26.73 -0.14 -1.53 16 20 C -0.12 -1.42 5.65 -26.73 -0.15 -1.57 16 21 C -0.11 -1.13 5.45 -26.74 -0.15 -1.27 16 22 C -0.09 -0.89 3.19 -90.65 -0.29 -1.18 16 23 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 24 C -0.15 -1.62 8.50 37.16 0.32 -1.30 16 25 C -0.11 -1.17 4.73 -26.76 -0.13 -1.30 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 1.10 7.65 -51.93 -0.40 0.70 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.67 6.08 -51.93 -0.32 1.35 16 31 H 0.34 8.39 9.04 45.56 0.41 8.80 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.03 0.52 8.11 -51.93 -0.42 0.09 16 35 H 0.08 1.22 7.73 -51.93 -0.40 0.82 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.80 6.43 -51.93 -0.33 0.47 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.79 4.81 -51.92 -0.25 0.54 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -29.79 344.31 -8.00 -37.79 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -7.40 Total: 7.21 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -0.10 Total: -14.13 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.23 Total: -31.98 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.89 Total: -20.34 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.79 -8.00 -37.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930527671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.165 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds