Wall clock time and date at job start Mon Mar 30 2020 04:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 N 1.46302 * 113.99839 * 2 1 4 4 C 1.46901 * 110.99521 * 232.96869 * 3 2 1 5 5 C 1.53003 * 109.47023 * 66.04517 * 4 3 2 6 6 H 1.09005 * 109.47065 * 59.99610 * 5 4 3 7 7 O 1.42897 * 109.47498 * 299.99916 * 5 4 3 8 8 C 1.50703 * 109.47258 * 179.97438 * 5 4 3 9 9 H 1.08003 * 119.99815 * 359.97438 * 8 5 4 10 10 C 1.37874 * 119.99847 * 180.02562 * 8 5 4 11 11 N 1.31507 * 120.00284 * 359.97438 * 10 8 5 12 12 Si 1.86806 * 119.99736 * 180.02562 * 10 8 5 13 13 H 1.48494 * 109.47357 * 89.99322 * 12 10 8 14 14 H 1.48500 * 109.46914 * 209.99625 * 12 10 8 15 15 H 1.48501 * 109.46890 * 329.99519 * 12 10 8 16 16 C 1.46900 * 111.00015 * 109.01815 * 3 2 1 17 17 C 1.53003 * 109.46832 * 191.30163 * 16 3 2 18 18 H 1.08994 * 109.47117 * 304.40789 * 17 16 3 19 19 C 1.53001 * 109.46915 * 64.40528 * 17 16 3 20 20 C 1.53001 * 109.47163 * 179.97438 * 19 17 16 21 21 C 1.52996 * 109.47086 * 300.00343 * 20 19 17 22 22 C 1.52992 * 109.47299 * 59.99985 * 21 20 19 23 23 H 1.09008 * 109.47575 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.47636 * 59.99878 * 22 21 20 25 25 C 1.52990 * 109.47265 * 184.40505 * 17 16 3 26 26 H 1.08995 * 109.47378 * 304.83856 * 1 2 3 27 27 H 1.08997 * 109.46304 * 64.84290 * 1 2 3 28 28 H 1.09000 * 109.46752 * 184.83489 * 1 2 3 29 29 H 1.08996 * 109.47725 * 306.04512 * 4 3 2 30 30 H 1.09002 * 109.47206 * 186.04187 * 4 3 2 31 31 H 0.96701 * 113.99941 * 300.00064 * 7 5 4 32 32 H 0.97003 * 120.00147 * 180.02562 * 11 10 8 33 33 H 1.08992 * 109.47163 * 311.29854 * 16 3 2 34 34 H 1.08996 * 109.47409 * 71.30798 * 16 3 2 35 35 H 1.08994 * 109.47479 * 300.00110 * 19 17 16 36 36 H 1.09004 * 109.47131 * 60.00164 * 19 17 16 37 37 H 1.09004 * 109.46736 * 60.00200 * 20 19 17 38 38 H 1.08997 * 109.47550 * 179.97438 * 20 19 17 39 39 H 1.09004 * 109.47065 * 179.97438 * 21 20 19 40 40 H 1.08994 * 109.47302 * 299.99652 * 21 20 19 41 41 H 1.08996 * 109.46991 * 59.99698 * 24 22 21 42 42 H 1.08993 * 109.47844 * 180.02562 * 24 22 21 43 43 H 1.09009 * 109.47059 * 300.00428 * 24 22 21 44 44 H 1.09006 * 109.47456 * 300.00561 * 25 17 16 45 45 H 1.09001 * 109.47339 * 60.00405 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3366 0.0000 4 6 2.9927 1.4815 -1.0949 5 6 2.2606 1.4088 -2.4364 6 1 1.5254 2.2116 -2.4930 7 8 1.5984 0.1477 -2.5501 8 6 3.2542 1.5581 -3.5597 9 1 4.3029 1.6919 -3.3387 10 6 2.8243 1.5250 -4.8692 11 7 1.5473 1.3626 -5.1382 12 14 4.0560 1.7093 -6.2615 13 1 4.5630 0.3701 -6.6545 14 1 3.3940 2.3495 -7.4265 15 1 5.1902 2.5551 -5.8103 16 6 2.6465 1.6357 1.2966 17 6 3.0045 3.1219 1.3595 18 1 3.6401 3.3787 0.5121 19 6 1.7239 3.9576 1.3083 20 6 2.0819 5.4438 1.3718 21 6 2.8281 5.7333 2.6757 22 6 4.1086 4.8977 2.7269 23 1 4.6405 5.1043 3.6557 24 6 5.0011 5.2586 1.5378 25 6 3.7509 3.4120 2.6631 26 1 -0.3634 0.5870 0.8434 27 1 -0.3632 0.4369 -0.9302 28 1 -0.3633 -1.0240 0.0866 29 1 3.7279 0.6788 -1.0383 30 1 3.4978 2.4435 -1.0082 31 1 2.1929 -0.6139 -2.5079 32 1 1.2449 1.3390 -6.0596 33 1 1.9485 1.3959 2.0986 34 1 3.5512 1.0389 1.4117 35 1 1.1921 3.7511 0.3796 36 1 1.0883 3.7008 2.1558 37 1 2.7177 5.7009 0.5246 38 1 1.1697 6.0392 1.3349 39 1 3.0835 6.7921 2.7208 40 1 2.1924 5.4763 3.5229 41 1 5.2561 6.3173 1.5830 42 1 5.9132 4.6629 1.5739 43 1 4.4695 5.0523 0.6087 44 1 3.1154 3.1551 3.5106 45 1 4.6633 2.8166 2.6996 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930527671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:44 Heat of formation + Delta-G solvation = -93.969444 kcal Electronic energy + Delta-G solvation = -22650.873205 eV Core-core repulsion = 19475.471747 eV Total energy + Delta-G solvation = -3175.401458 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.39459 -38.56228 -36.92216 -35.16737 -34.19198 -32.59810 -32.02007 -29.80776 -27.59744 -27.02215 -26.97181 -24.38939 -23.13594 -22.69180 -21.26931 -19.48987 -18.97173 -17.72369 -16.72311 -16.59492 -16.53634 -16.12166 -15.66734 -15.48510 -15.33609 -15.10680 -14.68372 -14.60921 -14.46841 -13.80430 -13.60026 -13.28465 -13.14784 -13.02803 -12.84146 -12.76777 -12.57130 -12.46554 -12.33303 -12.25452 -12.01172 -11.83836 -11.59347 -11.12614 -10.97449 -10.90226 -10.80092 -10.70622 -10.61213 -10.04340 -9.45178 -8.11543 -6.37451 1.40540 1.40755 1.51634 1.81102 2.40098 3.14605 3.67334 3.82812 3.83374 4.00840 4.19527 4.33979 4.36973 4.42981 4.45078 4.50444 4.54867 4.60307 4.66120 4.68648 4.71527 4.78167 4.84901 4.88521 4.93580 5.02114 5.06195 5.10040 5.10988 5.16821 5.21495 5.35690 5.41021 5.44482 5.51218 5.58780 5.62743 5.69679 5.75132 5.91663 6.11052 6.29856 6.74269 7.35784 7.60701 8.92944 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017183 B = 0.005535 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.161248 B = 5057.857067 C = 6060.504013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 O -0.272 6.272 3 N -0.362 5.362 4 C 0.037 3.963 5 C 0.245 3.755 6 H 0.019 0.981 7 O -0.561 6.561 8 C -0.587 4.587 9 H 0.058 0.942 10 C 0.028 3.972 11 N -0.898 5.898 12 Si 0.958 3.042 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.264 1.264 16 C 0.044 3.956 17 C -0.076 4.076 18 H 0.062 0.938 19 C -0.103 4.103 20 C -0.122 4.122 21 C -0.109 4.109 22 C -0.086 4.086 23 H 0.084 0.916 24 C -0.154 4.154 25 C -0.101 4.101 26 H 0.045 0.955 27 H 0.021 0.979 28 H 0.097 0.903 29 H 0.027 0.973 30 H 0.092 0.908 31 H 0.345 0.655 32 H 0.260 0.740 33 H 0.083 0.917 34 H 0.034 0.966 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.072 0.928 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.505 6.154 17.204 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.277 6.277 3 N -0.131 5.131 4 C -0.091 4.091 5 C 0.186 3.814 6 H 0.036 0.964 7 O -0.363 6.363 8 C -0.625 4.625 9 H 0.076 0.924 10 C -0.174 4.174 11 N -0.535 5.535 12 Si 0.783 3.217 13 H -0.200 1.200 14 H -0.208 1.208 15 H -0.188 1.188 16 C -0.084 4.084 17 C -0.095 4.095 18 H 0.081 0.919 19 C -0.140 4.140 20 C -0.159 4.159 21 C -0.146 4.146 22 C -0.104 4.104 23 H 0.102 0.898 24 C -0.211 4.211 25 C -0.139 4.139 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.116 0.884 29 H 0.046 0.954 30 H 0.110 0.890 31 H 0.189 0.811 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.544 6.665 16.957 18.396 hybrid contribution 1.326 -0.837 -1.064 1.895 sum 3.870 5.827 15.894 17.365 Atomic orbital electron populations 1.22439 0.80500 1.01728 0.99197 1.90579 1.21392 1.18909 1.96780 1.67585 1.33426 1.08191 1.03878 1.23045 0.93225 1.00324 0.92485 1.19031 0.90368 0.83248 0.88707 0.96352 1.86504 1.38024 1.15407 1.96411 1.22017 0.94631 1.53255 0.92618 0.92414 1.25857 0.96676 0.93441 1.01460 1.70224 1.15788 1.47889 1.19607 0.85584 0.79143 0.78483 0.78504 1.19969 1.20830 1.18830 1.22573 0.97917 0.96921 0.90992 1.21181 0.97395 0.91705 0.99190 0.91927 1.21410 0.96488 0.94780 1.01351 1.21578 1.00179 0.95648 0.98525 1.21542 0.96143 0.99741 0.97178 1.21064 0.96132 0.94229 0.99015 0.89794 1.21966 0.99293 1.01463 0.98421 1.21536 0.99758 0.96559 0.96086 0.93666 0.96062 0.88446 0.95422 0.89024 0.81099 0.93059 0.89856 0.94808 0.93758 0.91720 0.92764 0.91903 0.91311 0.91311 0.92127 0.92838 0.93448 0.90902 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.05 11.10 113.37 1.26 3.30 16 2 O -0.27 -10.84 9.34 -30.17 -0.28 -11.13 16 3 N -0.36 -13.76 4.19 -513.89 -2.15 -15.92 16 4 C 0.04 1.60 4.88 86.30 0.42 2.02 16 5 C 0.24 12.93 3.09 29.85 0.09 13.02 16 6 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 7 O -0.56 -30.22 10.12 -128.98 -1.31 -31.52 16 8 C -0.59 -32.80 8.76 25.60 0.22 -32.58 16 9 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 10 C 0.03 1.60 5.40 84.65 0.46 2.05 16 11 N -0.90 -54.57 12.84 21.44 0.28 -54.29 16 12 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 14 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 15 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 16 C 0.04 1.31 4.83 86.30 0.42 1.73 16 17 C -0.08 -1.94 1.86 -10.80 -0.02 -1.96 16 18 H 0.06 1.84 4.53 -2.39 -0.01 1.83 16 19 C -0.10 -2.65 5.09 30.59 0.16 -2.50 16 20 C -0.12 -2.69 5.65 30.59 0.17 -2.52 16 21 C -0.11 -1.88 5.45 30.59 0.17 -1.71 16 22 C -0.09 -1.49 3.19 -10.81 -0.03 -1.53 16 23 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 24 C -0.15 -2.99 8.50 71.98 0.61 -2.38 16 25 C -0.10 -1.98 4.73 30.58 0.14 -1.83 16 26 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.02 0.86 7.65 -2.39 -0.02 0.84 16 28 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 3.74 6.08 -2.39 -0.01 3.73 16 31 H 0.35 17.45 9.04 -74.06 -0.67 16.78 16 32 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 33 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.03 1.01 8.11 -2.39 -0.02 0.99 16 35 H 0.04 1.43 7.73 -2.39 -0.02 1.41 16 36 H 0.06 1.52 8.14 -2.38 -0.02 1.51 16 37 H 0.05 1.32 6.43 -2.38 -0.02 1.30 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.05 1.10 4.81 -2.38 -0.01 1.09 16 44 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 45 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -64.63 344.31 2.90 -61.72 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.28 Total: 30.16 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 4.07 Total: -24.89 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -1.88 Total: -70.21 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -1.59 Total: -42.65 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -64.63 2.90 -61.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930527671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.248 kcal (2) G-P(sol) polarization free energy of solvation -64.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds