Wall clock time and date at job start Mon Mar 30 2020 04:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42896 * 114.00285 * 2 1 4 4 C 1.53008 * 109.47349 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47107 * 63.32133 * 4 3 2 6 6 C 1.46897 * 110.99646 * 196.04453 * 5 4 3 7 7 C 1.53003 * 109.47035 * 176.61726 * 6 5 4 8 8 H 1.09005 * 109.47041 * 59.60839 * 7 6 5 9 9 O 1.42900 * 109.47225 * 299.61488 * 7 6 5 10 10 C 1.50690 * 109.47330 * 179.60878 * 7 6 5 11 11 H 1.08000 * 120.00208 * 0.02562 * 10 7 6 12 12 C 1.37879 * 120.00218 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99649 * 359.97438 * 12 10 7 14 14 Si 1.86797 * 120.00059 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47000 * 269.99766 * 14 12 10 16 16 H 1.48499 * 109.47701 * 29.99691 * 14 12 10 17 17 H 1.48503 * 109.47416 * 150.00113 * 14 12 10 18 18 C 1.46900 * 110.99549 * 72.09660 * 5 4 3 19 19 H 1.09003 * 110.43431 * 332.11069 * 18 5 4 20 20 C 1.54262 * 110.48781 * 94.79692 * 18 5 4 21 21 C 1.53877 * 106.59605 * 142.28489 * 20 18 5 22 22 C 1.54262 * 106.60360 * 0.02562 * 21 20 18 23 23 H 1.08996 * 110.48844 * 95.06035 * 22 21 20 24 24 C 1.52997 * 110.48954 * 217.71238 * 22 21 20 25 25 C 1.54896 * 104.19380 * 336.38874 * 22 21 20 26 26 H 1.09005 * 109.46827 * 60.00120 * 1 2 3 27 27 H 1.09003 * 109.47471 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47463 * 300.00377 * 1 2 3 29 29 H 1.08999 * 109.47677 * 59.99639 * 3 2 1 30 30 H 1.09001 * 109.47145 * 299.99306 * 3 2 1 31 31 H 1.09002 * 109.46809 * 303.32431 * 4 3 2 32 32 H 1.08993 * 109.47163 * 183.32628 * 4 3 2 33 33 H 1.09002 * 109.47298 * 56.61782 * 6 5 4 34 34 H 1.08999 * 109.47377 * 296.61428 * 6 5 4 35 35 H 0.96702 * 113.99669 * 300.00063 * 9 7 6 36 36 H 0.97000 * 120.00122 * 0.02562 * 13 12 10 37 37 H 1.08997 * 110.03503 * 261.56537 * 20 18 5 38 38 H 1.08995 * 110.03288 * 23.00287 * 20 18 5 39 39 H 1.09003 * 110.03252 * 240.70952 * 21 20 18 40 40 H 1.09001 * 110.06932 * 119.30889 * 21 20 18 41 41 H 1.08997 * 109.47503 * 174.77268 * 24 22 21 42 42 H 1.08997 * 109.47099 * 294.77657 * 24 22 21 43 43 H 1.09004 * 109.47258 * 54.76859 * 24 22 21 44 44 H 1.08997 * 110.75349 * 279.63051 * 25 22 21 45 45 H 1.08996 * 110.91561 * 156.33147 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9740 0.5262 -1.2385 6 6 5.3590 0.0511 -1.1198 7 6 5.7510 -0.7010 -2.3933 8 1 5.6618 -0.0343 -3.2510 9 8 4.8839 -1.8230 -2.5699 10 6 7.1749 -1.1801 -2.2755 11 1 7.7433 -0.9697 -1.3817 12 6 7.7521 -1.8872 -3.3090 13 7 7.0597 -2.1438 -4.3973 14 14 9.5168 -2.4817 -3.1627 15 1 10.4351 -1.4414 -3.6918 16 1 9.8346 -2.7429 -1.7358 17 1 9.6840 -3.7333 -3.9442 18 6 3.8217 1.4214 -2.3932 19 1 3.0146 2.1330 -2.2192 20 6 5.1445 2.1609 -2.6813 21 6 5.2718 2.2537 -4.2120 22 6 4.0216 1.5681 -4.8007 23 1 3.2482 2.3052 -5.0166 24 6 4.3849 0.7853 -6.0640 25 6 3.5544 0.6045 -3.6815 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6886 1.8464 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 3.8534 0.5929 0.8578 32 1 3.9787 2.1785 0.0590 33 1 5.4416 -0.6176 -0.2630 34 1 6.0248 0.9029 -0.9815 35 1 4.9114 -2.4597 -1.8426 36 1 6.1432 -1.8354 -4.4731 37 1 5.1156 3.1605 -2.2478 38 1 5.9834 1.5992 -2.2704 39 1 6.1725 1.7373 -4.5438 40 1 5.3051 3.2982 -4.5219 41 1 3.5122 0.2336 -6.4132 42 1 4.7109 1.4783 -6.8396 43 1 5.1907 0.0865 -5.8394 44 1 4.1464 -0.3107 -3.6879 45 1 2.4932 0.3770 -3.7818 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119849402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:43 Heat of formation + Delta-G solvation = -88.482181 kcal Electronic energy + Delta-G solvation = -23358.176097 eV Core-core repulsion = 20183.012585 eV Total energy + Delta-G solvation = -3175.163512 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.64414 -37.59698 -35.73748 -34.81563 -31.98097 -30.68473 -29.39844 -28.36053 -27.01777 -25.85157 -24.22825 -23.71499 -21.73518 -21.02748 -19.50418 -18.49861 -17.22339 -16.42261 -16.17730 -15.70597 -15.26175 -14.77942 -14.51149 -14.21793 -13.73050 -13.35305 -12.99207 -12.77306 -12.76595 -12.50822 -12.37068 -11.92298 -11.81032 -11.60384 -11.44456 -11.28666 -10.85806 -10.76672 -10.59919 -10.49404 -10.25801 -10.11819 -10.08478 -9.95925 -9.79090 -9.58605 -9.45879 -8.89864 -8.32147 -7.89399 -7.52047 -6.27437 -4.09630 3.44283 3.47868 3.63665 3.95933 4.35068 4.58789 5.08521 5.12447 5.17258 5.22961 5.38135 5.42582 5.44251 5.44816 5.49977 5.66131 5.70361 5.74681 5.80503 5.90993 6.01815 6.05756 6.09856 6.11090 6.17574 6.24875 6.25990 6.43135 6.46800 6.49458 6.63188 6.72623 6.76523 6.90491 6.94443 7.22236 7.35862 7.65347 7.75746 7.81685 8.14742 8.44302 8.94914 9.33921 9.75284 11.12811 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017412 B = 0.006705 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.730826 B = 4174.906223 C = 4917.017350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.070 3.930 4 C 0.052 3.948 5 N -0.510 5.510 6 C 0.031 3.969 7 C 0.204 3.796 8 H 0.078 0.922 9 O -0.569 6.569 10 C -0.651 4.651 11 H 0.045 0.955 12 C 0.037 3.963 13 N -0.893 5.893 14 Si 1.065 2.935 15 H -0.289 1.289 16 H -0.290 1.290 17 H -0.285 1.285 18 C 0.085 3.915 19 H 0.064 0.936 20 C -0.176 4.176 21 C -0.113 4.113 22 C -0.096 4.096 23 H 0.059 0.941 24 C -0.143 4.143 25 C -0.126 4.126 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.035 0.965 35 H 0.351 0.649 36 H 0.285 0.715 37 H 0.047 0.953 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.123 0.877 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.191 8.818 5.031 13.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C -0.007 4.007 4 C -0.077 4.077 5 N -0.233 5.233 6 C -0.096 4.096 7 C 0.146 3.854 8 H 0.095 0.905 9 O -0.373 6.373 10 C -0.690 4.690 11 H 0.063 0.937 12 C -0.172 4.172 13 N -0.528 5.528 14 Si 0.894 3.106 15 H -0.216 1.216 16 H -0.217 1.217 17 H -0.210 1.210 18 C -0.024 4.024 19 H 0.082 0.918 20 C -0.214 4.214 21 C -0.151 4.151 22 C -0.115 4.115 23 H 0.077 0.923 24 C -0.201 4.201 25 C -0.164 4.164 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.196 0.804 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.141 0.859 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.352 7.734 3.615 11.944 hybrid contribution -0.724 1.780 1.677 2.550 sum -9.076 9.514 5.292 14.174 Atomic orbital electron populations 1.22687 0.82319 1.02410 0.99120 1.88064 1.18286 1.27089 1.95085 1.22567 0.94104 0.85083 0.98973 1.22114 0.93145 0.97603 0.94821 1.62204 1.23671 1.36373 1.01007 1.23060 0.86064 0.98181 1.02294 1.19936 0.88094 0.85278 0.92049 0.90496 1.86400 1.67144 1.35733 1.48065 1.22514 0.98772 1.42100 1.05595 0.93715 1.25644 1.04979 0.94008 0.92524 1.70608 1.12931 1.41905 1.27336 0.83630 0.74928 0.76778 0.75290 1.21615 1.21671 1.21042 1.22483 0.95404 0.92670 0.91842 0.91801 1.23150 1.01275 0.99931 0.97067 1.22096 0.98815 0.99350 0.94849 1.21915 0.96750 0.97203 0.95670 0.92263 1.21791 1.01883 0.99928 0.96462 1.23139 1.01359 1.00679 0.91173 0.94543 0.89897 0.94919 0.93932 0.93655 0.90515 0.94081 0.92051 0.94748 0.80415 0.90257 0.93460 0.88210 0.91178 0.93073 0.93164 0.93644 0.91329 0.85886 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.37 -5.78 10.62 -35.23 -0.37 -6.15 16 3 C 0.07 0.96 6.06 37.16 0.23 1.19 16 4 C 0.05 0.79 5.30 -3.82 -0.02 0.77 16 5 N -0.51 -9.38 4.29 -224.67 -0.96 -10.35 16 6 C 0.03 0.65 3.99 -3.82 -0.02 0.63 16 7 C 0.20 4.92 1.00 -27.89 -0.03 4.89 16 8 H 0.08 1.92 3.34 -51.93 -0.17 1.75 16 9 O -0.57 -14.24 10.30 -35.23 -0.36 -14.60 16 10 C -0.65 -17.75 8.76 -34.44 -0.30 -18.05 16 11 H 0.04 1.22 7.74 -52.49 -0.41 0.82 16 12 C 0.04 1.05 5.40 -17.82 -0.10 0.95 16 13 N -0.89 -26.50 13.53 55.43 0.75 -25.75 16 14 Si 1.06 24.97 29.90 -169.99 -5.08 19.89 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C 0.08 1.49 2.67 -66.07 -0.18 1.31 16 19 H 0.06 1.03 6.29 -51.93 -0.33 0.70 16 20 C -0.18 -3.08 5.35 -25.61 -0.14 -3.21 16 21 C -0.11 -1.94 5.73 -25.61 -0.15 -2.09 16 22 C -0.10 -1.63 3.45 -88.96 -0.31 -1.93 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 C -0.14 -2.46 9.14 37.16 0.34 -2.12 16 25 C -0.13 -2.39 5.36 -24.74 -0.13 -2.52 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.61 6.59 -51.93 -0.34 0.27 16 31 H 0.08 1.18 7.91 -51.93 -0.41 0.77 16 32 H 0.04 0.58 8.05 -51.93 -0.42 0.16 16 33 H 0.06 1.30 8.01 -51.93 -0.42 0.88 16 34 H 0.03 0.71 5.94 -51.93 -0.31 0.41 16 35 H 0.35 8.29 9.04 45.56 0.41 8.70 16 36 H 0.29 8.54 6.47 -40.82 -0.26 8.27 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 2.01 3.86 -51.93 -0.20 1.81 16 39 H 0.07 1.36 7.60 -51.93 -0.39 0.97 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.40 8.08 -51.93 -0.42 0.98 16 44 H 0.12 2.78 3.47 -51.93 -0.18 2.60 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -29.93 337.00 -7.51 -37.44 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -6.87 Total: 13.16 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 0.32 Total: -18.71 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: -0.21 Total: -36.09 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.74 Total: -20.76 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.93 -7.51 -37.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119849402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.043 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds