Wall clock time and date at job start Mon Mar 30 2020 04:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42896 * 114.00285 * 2 1 4 4 C 1.53008 * 109.47349 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47107 * 63.32133 * 4 3 2 6 6 C 1.46897 * 110.99646 * 196.04453 * 5 4 3 7 7 C 1.53003 * 109.47035 * 176.61726 * 6 5 4 8 8 H 1.09005 * 109.47041 * 59.60839 * 7 6 5 9 9 O 1.42900 * 109.47225 * 299.61488 * 7 6 5 10 10 C 1.50690 * 109.47330 * 179.60878 * 7 6 5 11 11 H 1.08000 * 120.00208 * 0.02562 * 10 7 6 12 12 C 1.37879 * 120.00218 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99649 * 359.97438 * 12 10 7 14 14 Si 1.86797 * 120.00059 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47000 * 269.99766 * 14 12 10 16 16 H 1.48499 * 109.47701 * 29.99691 * 14 12 10 17 17 H 1.48503 * 109.47416 * 150.00113 * 14 12 10 18 18 C 1.46900 * 110.99549 * 72.09660 * 5 4 3 19 19 H 1.09003 * 110.43431 * 332.11069 * 18 5 4 20 20 C 1.54262 * 110.48781 * 94.79692 * 18 5 4 21 21 C 1.53877 * 106.59605 * 142.28489 * 20 18 5 22 22 C 1.54262 * 106.60360 * 0.02562 * 21 20 18 23 23 H 1.08996 * 110.48844 * 95.06035 * 22 21 20 24 24 C 1.52997 * 110.48954 * 217.71238 * 22 21 20 25 25 C 1.54896 * 104.19380 * 336.38874 * 22 21 20 26 26 H 1.09005 * 109.46827 * 60.00120 * 1 2 3 27 27 H 1.09003 * 109.47471 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47463 * 300.00377 * 1 2 3 29 29 H 1.08999 * 109.47677 * 59.99639 * 3 2 1 30 30 H 1.09001 * 109.47145 * 299.99306 * 3 2 1 31 31 H 1.09002 * 109.46809 * 303.32431 * 4 3 2 32 32 H 1.08993 * 109.47163 * 183.32628 * 4 3 2 33 33 H 1.09002 * 109.47298 * 56.61782 * 6 5 4 34 34 H 1.08999 * 109.47377 * 296.61428 * 6 5 4 35 35 H 0.96702 * 113.99669 * 300.00063 * 9 7 6 36 36 H 0.97000 * 120.00122 * 0.02562 * 13 12 10 37 37 H 1.08997 * 110.03503 * 261.56537 * 20 18 5 38 38 H 1.08995 * 110.03288 * 23.00287 * 20 18 5 39 39 H 1.09003 * 110.03252 * 240.70952 * 21 20 18 40 40 H 1.09001 * 110.06932 * 119.30889 * 21 20 18 41 41 H 1.08997 * 109.47503 * 174.77268 * 24 22 21 42 42 H 1.08997 * 109.47099 * 294.77657 * 24 22 21 43 43 H 1.09004 * 109.47258 * 54.76859 * 24 22 21 44 44 H 1.08997 * 110.75349 * 279.63051 * 25 22 21 45 45 H 1.08996 * 110.91561 * 156.33147 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9740 0.5262 -1.2385 6 6 5.3590 0.0511 -1.1198 7 6 5.7510 -0.7010 -2.3933 8 1 5.6618 -0.0343 -3.2510 9 8 4.8839 -1.8230 -2.5699 10 6 7.1749 -1.1801 -2.2755 11 1 7.7433 -0.9697 -1.3817 12 6 7.7521 -1.8872 -3.3090 13 7 7.0597 -2.1438 -4.3973 14 14 9.5168 -2.4817 -3.1627 15 1 10.4351 -1.4414 -3.6918 16 1 9.8346 -2.7429 -1.7358 17 1 9.6840 -3.7333 -3.9442 18 6 3.8217 1.4214 -2.3932 19 1 3.0146 2.1330 -2.2192 20 6 5.1445 2.1609 -2.6813 21 6 5.2718 2.2537 -4.2120 22 6 4.0216 1.5681 -4.8007 23 1 3.2482 2.3052 -5.0166 24 6 4.3849 0.7853 -6.0640 25 6 3.5544 0.6045 -3.6815 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6886 1.8464 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 3.8534 0.5929 0.8578 32 1 3.9787 2.1785 0.0590 33 1 5.4416 -0.6176 -0.2630 34 1 6.0248 0.9029 -0.9815 35 1 4.9114 -2.4597 -1.8426 36 1 6.1432 -1.8354 -4.4731 37 1 5.1156 3.1605 -2.2478 38 1 5.9834 1.5992 -2.2704 39 1 6.1725 1.7373 -4.5438 40 1 5.3051 3.2982 -4.5219 41 1 3.5122 0.2336 -6.4132 42 1 4.7109 1.4783 -6.8396 43 1 5.1907 0.0865 -5.8394 44 1 4.1464 -0.3107 -3.6879 45 1 2.4932 0.3770 -3.7818 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119849402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:42 Heat of formation + Delta-G solvation = -109.875437 kcal Electronic energy + Delta-G solvation = -23359.103778 eV Core-core repulsion = 20183.012585 eV Total energy + Delta-G solvation = -3176.091193 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11978 -38.70007 -37.50163 -36.33245 -34.11876 -32.01283 -30.93130 -29.81044 -28.51616 -26.99599 -25.85227 -25.35276 -22.99195 -22.80170 -20.99687 -19.95014 -19.17885 -17.78537 -17.39453 -17.09870 -16.67919 -16.26500 -15.88106 -15.63381 -15.46525 -14.90440 -14.46191 -14.43146 -14.20035 -14.03587 -13.81317 -13.62818 -13.29021 -12.95249 -12.83724 -12.61262 -12.49952 -12.12536 -12.10854 -11.95157 -11.91154 -11.85732 -11.60957 -11.46358 -11.34750 -11.01841 -10.81701 -10.49002 -10.36119 -9.91948 -8.95709 -8.50544 -6.33477 1.52890 1.61008 1.78402 2.58267 2.91669 3.06240 3.26647 3.70876 3.76283 3.88513 4.10387 4.21501 4.22443 4.28781 4.37116 4.41079 4.47039 4.52704 4.58217 4.60798 4.63354 4.67817 4.71141 4.77559 4.81403 4.88052 4.89808 4.92161 5.00341 5.04409 5.12963 5.20652 5.31230 5.43557 5.46428 5.60814 5.92875 5.96516 6.16456 6.30471 6.35374 6.50354 6.70735 7.35855 7.61764 8.87881 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017412 B = 0.006705 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.730826 B = 4174.906223 C = 4917.017350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.072 3.928 4 C 0.049 3.951 5 N -0.522 5.522 6 C 0.048 3.952 7 C 0.205 3.795 8 H 0.071 0.929 9 O -0.578 6.578 10 C -0.662 4.662 11 H 0.039 0.961 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 1.110 2.890 15 H -0.276 1.276 16 H -0.275 1.275 17 H -0.286 1.286 18 C 0.089 3.911 19 H 0.090 0.910 20 C -0.172 4.172 21 C -0.111 4.111 22 C -0.090 4.090 23 H 0.091 0.909 24 C -0.139 4.139 25 C -0.130 4.130 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.035 0.965 35 H 0.352 0.648 36 H 0.272 0.728 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.024 0.976 44 H 0.082 0.918 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.093 10.865 5.845 15.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.004 4.004 4 C -0.079 4.079 5 N -0.245 5.245 6 C -0.080 4.080 7 C 0.149 3.851 8 H 0.088 0.912 9 O -0.382 6.382 10 C -0.700 4.700 11 H 0.057 0.943 12 C -0.214 4.214 13 N -0.555 5.555 14 Si 0.933 3.067 15 H -0.201 1.201 16 H -0.200 1.200 17 H -0.212 1.212 18 C -0.019 4.019 19 H 0.108 0.892 20 C -0.210 4.210 21 C -0.149 4.149 22 C -0.109 4.109 23 H 0.110 0.890 24 C -0.196 4.196 25 C -0.168 4.168 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.197 0.803 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.100 0.900 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.271 9.799 4.448 14.204 hybrid contribution -0.513 1.145 1.446 1.915 sum -9.784 10.944 5.894 15.819 Atomic orbital electron populations 1.22843 0.80419 1.03167 1.00448 1.88009 1.20533 1.28453 1.95393 1.22604 0.92533 0.84718 1.00572 1.22238 0.94719 0.98091 0.92876 1.62096 1.21653 1.37854 1.02853 1.22678 0.87935 0.97680 0.99705 1.19851 0.86575 0.85111 0.93610 0.91191 1.86406 1.67196 1.36253 1.48352 1.22915 1.00459 1.41565 1.05078 0.94261 1.26998 1.08307 0.94009 0.92084 1.70725 1.12588 1.43663 1.28516 0.83033 0.71009 0.76520 0.76112 1.20129 1.20004 1.21202 1.22502 0.96132 0.92525 0.90753 0.89199 1.23062 0.99972 1.00836 0.97155 1.22067 0.97417 1.00626 0.94783 1.21919 0.97318 0.97143 0.94487 0.89049 1.21730 1.00620 0.99653 0.97596 1.23052 1.00582 0.99842 0.93328 0.93935 0.89601 0.92744 0.90962 0.93202 0.91107 0.92161 0.93070 0.94676 0.80332 0.91729 0.90725 0.91348 0.94632 0.90092 0.92479 0.91500 0.95724 0.89955 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.40 -12.04 10.62 -148.98 -1.58 -13.62 16 3 C 0.07 1.78 6.06 71.98 0.44 2.22 16 4 C 0.05 1.39 5.30 86.31 0.46 1.85 16 5 N -0.52 -18.78 4.29 -864.73 -3.71 -22.49 16 6 C 0.05 2.01 3.99 86.30 0.34 2.36 16 7 C 0.21 10.28 1.00 29.85 0.03 10.31 16 8 H 0.07 3.65 3.34 -2.38 -0.01 3.64 16 9 O -0.58 -30.18 10.30 -148.98 -1.53 -31.71 16 10 C -0.66 -37.05 8.76 25.60 0.22 -36.82 16 11 H 0.04 2.18 7.74 -2.91 -0.02 2.16 16 12 C -0.01 -0.64 5.40 84.65 0.46 -0.18 16 13 N -0.92 -56.50 13.53 21.45 0.29 -56.21 16 14 Si 1.11 50.82 29.90 68.60 2.05 52.87 16 15 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 18 C 0.09 2.98 2.67 45.98 0.12 3.11 16 19 H 0.09 2.56 6.29 -2.39 -0.02 2.55 16 20 C -0.17 -5.75 5.35 31.32 0.17 -5.59 16 21 C -0.11 -3.69 5.73 31.32 0.18 -3.51 16 22 C -0.09 -2.91 3.45 -9.72 -0.03 -2.95 16 23 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 24 C -0.14 -4.78 9.14 71.98 0.66 -4.12 16 25 C -0.13 -4.89 5.36 31.88 0.17 -4.72 16 26 H 0.04 0.82 8.14 -2.38 -0.02 0.81 16 27 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.05 1.17 6.59 -2.39 -0.02 1.16 16 31 H 0.07 2.09 7.91 -2.39 -0.02 2.07 16 32 H 0.06 1.50 8.05 -2.39 -0.02 1.48 16 33 H 0.05 2.21 8.01 -2.39 -0.02 2.19 16 34 H 0.04 1.47 5.94 -2.39 -0.01 1.46 16 35 H 0.35 17.42 9.04 -74.06 -0.67 16.75 16 36 H 0.27 17.13 6.47 -92.71 -0.60 16.53 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.07 2.75 3.86 -2.39 -0.01 2.74 16 39 H 0.03 1.41 7.60 -2.39 -0.02 1.39 16 40 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.02 1.04 8.08 -2.39 -0.02 1.02 16 44 H 0.08 3.85 3.47 -2.39 -0.01 3.85 16 45 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -66.55 337.00 0.45 -66.10 By element: Atomic # 1 Polarization: 40.81 SS G_CDS: 0.47 Total: 41.28 kcal Atomic # 6 Polarization: -40.68 SS G_CDS: 4.46 Total: -36.22 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -3.42 Total: -78.70 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -3.12 Total: -45.33 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 2.05 Total: 52.87 kcal Total: -66.55 0.45 -66.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119849402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.771 kcal (2) G-P(sol) polarization free energy of solvation -66.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds