Wall clock time and date at job start Mon Mar 30 2020 04:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35827 * 116.99935 * 2 1 4 4 C 1.39942 * 119.60914 * 359.97438 * 3 2 1 5 5 C 1.35881 * 121.01258 * 180.02562 * 4 3 2 6 6 C 1.40902 * 119.81020 * 0.02562 * 5 4 3 7 7 N 1.33233 * 120.90902 * 180.25123 * 6 5 4 8 8 C 1.32003 * 121.30659 * 180.25461 * 7 6 5 9 9 C 1.47994 * 119.24739 * 179.75551 * 8 7 6 10 10 O 1.21573 * 119.99919 * 179.72911 * 9 8 7 11 11 N 1.34777 * 119.99804 * 359.72627 * 9 8 7 12 12 C 1.36718 * 119.99897 * 179.72201 * 11 9 8 13 13 H 1.08002 * 119.99547 * 0.27761 * 12 11 9 14 14 C 1.39143 * 120.00337 * 180.27604 * 12 11 9 15 15 N 1.31294 * 119.99814 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00309 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47002 * 0.02562 * 16 14 12 18 18 H 1.48492 * 109.47205 * 120.00196 * 16 14 12 19 19 H 1.48503 * 109.47239 * 240.00268 * 16 14 12 20 20 C 1.40422 * 121.50221 * 359.47900 * 8 7 6 21 21 C 1.36401 * 119.80438 * 0.25497 * 20 8 7 22 22 C 1.40864 * 118.26945 * 0.02562 * 21 20 8 23 23 C 1.36683 * 119.60535 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.47662 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46911 * 300.00497 * 1 2 3 26 26 H 1.09003 * 109.47317 * 59.99977 * 1 2 3 27 27 H 1.07995 * 119.49409 * 0.02562 * 4 3 2 28 28 H 1.08002 * 120.09396 * 179.97438 * 5 4 3 29 29 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 30 30 H 0.97008 * 119.99646 * 179.97438 * 15 14 12 31 31 H 1.07992 * 120.09552 * 180.23386 * 20 8 7 32 32 H 1.07997 * 120.85941 * 179.97438 * 21 20 8 33 33 H 1.08000 * 120.18079 * 359.94850 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2755 2.3787 -0.0005 5 6 1.8625 3.6041 -0.0011 6 6 3.2677 3.7077 -0.0016 7 7 3.8663 4.8980 0.0028 8 6 5.1820 5.0041 -0.0027 9 6 5.7989 6.3494 -0.0028 10 8 7.0093 6.4630 -0.0029 11 7 5.0188 7.4484 -0.0030 12 6 5.5886 8.6912 0.0026 13 1 6.6639 8.7921 0.0026 14 6 4.7833 9.8259 0.0083 15 7 3.4761 9.7031 0.0087 16 14 5.5619 11.5239 0.0152 17 1 7.0409 11.3902 0.0128 18 1 5.1310 12.2710 -1.1936 19 1 5.1329 12.2602 1.2313 20 6 6.0097 3.8698 -0.0026 21 6 5.4531 2.6244 -0.0020 22 6 4.0483 2.5215 -0.0020 23 6 3.4111 1.2724 -0.0005 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.1980 2.3052 -0.0005 28 1 1.2537 4.4962 -0.0019 29 1 4.0530 7.3578 -0.0026 30 1 2.9147 10.4942 0.0130 31 1 7.0836 3.9830 -0.0033 32 1 6.0735 1.7404 -0.0023 33 1 3.9959 0.3644 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355740779.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:08 Heat of formation + Delta-G solvation = -19.139887 kcal Electronic energy + Delta-G solvation = -19436.869730 eV Core-core repulsion = 16234.929946 eV Total energy + Delta-G solvation = -3201.939785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.095 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.77063 -39.31432 -37.86820 -35.57901 -34.14356 -33.29434 -31.39651 -30.20050 -29.79265 -27.29976 -25.55840 -24.11508 -22.97822 -22.01637 -20.12803 -18.41944 -18.12816 -17.56305 -16.94837 -15.89657 -15.82837 -15.46727 -14.78677 -14.33362 -14.29556 -14.08680 -13.89536 -13.22310 -13.13362 -13.07667 -12.74669 -12.47732 -12.04020 -11.77819 -11.61490 -11.22191 -11.16612 -10.57872 -10.44405 -10.38354 -10.29377 -9.66532 -9.33864 -8.48996 -8.48093 -8.13857 -7.76100 -6.64401 -3.91324 0.51851 0.93642 2.18795 2.81070 3.13620 3.14634 3.18519 3.26107 3.91722 4.02063 4.44028 4.56241 4.64890 4.75709 4.82965 4.94319 4.99452 5.01892 5.23891 5.25122 5.28201 5.30163 5.64395 5.78982 5.89699 6.05885 6.19585 6.25972 6.27839 6.53351 6.61037 6.97562 7.26678 7.33932 7.88085 8.20971 8.48991 8.98485 9.40441 9.97475 10.50766 Molecular weight = 272.09amu Principal moments of inertia in cm(-1) A = 0.031348 B = 0.004024 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.996187 B = 6955.862686 C = 7833.706405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.116 3.884 4 C -0.181 4.181 5 C -0.047 4.047 6 C 0.105 3.895 7 N -0.456 5.456 8 C 0.140 3.860 9 C 0.458 3.542 10 O -0.600 6.600 11 N -0.513 5.513 12 C -0.290 4.290 13 H 0.112 0.888 14 C 0.025 3.975 15 N -0.870 5.870 16 Si 0.937 3.063 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.115 4.115 21 C -0.083 4.083 22 C -0.070 4.070 23 C -0.142 4.142 24 H 0.098 0.902 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.133 0.867 28 H 0.141 0.859 29 H 0.406 0.594 30 H 0.278 0.722 31 H 0.147 0.853 32 H 0.139 0.861 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.215 -15.620 -0.016 17.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.071 3.929 4 C -0.201 4.201 5 C -0.066 4.066 6 C -0.019 4.019 7 N -0.168 5.168 8 C -0.013 4.013 9 C 0.246 3.754 10 O -0.488 6.488 11 N -0.145 5.145 12 C -0.421 4.421 13 H 0.130 0.870 14 C -0.181 4.181 15 N -0.509 5.509 16 Si 0.763 3.237 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.135 4.135 21 C -0.108 4.108 22 C -0.073 4.073 23 C -0.161 4.161 24 H 0.116 0.884 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.150 0.850 28 H 0.159 0.841 29 H 0.242 0.758 30 H 0.088 0.912 31 H 0.165 0.835 32 H 0.157 0.843 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.106 -14.833 -0.012 16.447 hybrid contribution -0.159 0.119 0.003 0.199 sum -7.265 -14.714 -0.008 16.410 Atomic orbital electron populations 1.23046 0.78599 1.03767 1.01435 1.86051 1.21240 1.26940 1.89057 1.18641 0.92133 0.84030 0.98087 1.20999 1.00233 0.92009 1.06908 1.20754 0.92442 0.97710 0.95718 1.18877 0.93974 0.88190 1.00890 1.68017 1.11125 1.25588 1.12108 1.21853 0.88554 0.95843 0.95001 1.17285 0.86726 0.82745 0.88671 1.90607 1.13197 1.85560 1.59395 1.41920 1.10198 1.04750 1.57672 1.20043 0.94760 0.81446 1.45835 0.87013 1.25528 0.95235 1.00906 0.96423 1.69621 1.03513 1.31810 1.45932 0.85676 0.79690 0.80322 0.78012 1.18745 1.20350 1.20344 1.21801 1.02346 0.91667 0.97735 1.21271 0.92978 0.97990 0.98580 1.18551 0.94294 0.93298 1.01165 1.19985 0.91564 0.97091 1.07501 0.88408 0.92619 0.92611 0.84952 0.84083 0.75844 0.91172 0.83509 0.84348 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.80 101.05 0.99 1.18 16 2 O -0.32 -3.60 10.47 -19.20 -0.20 -3.80 16 3 C 0.12 1.49 6.64 -39.51 -0.26 1.23 16 4 C -0.18 -2.22 8.93 -39.79 -0.36 -2.57 16 5 C -0.05 -0.70 9.98 -39.42 -0.39 -1.09 16 6 C 0.10 1.86 6.61 -84.81 -0.56 1.30 16 7 N -0.46 -9.50 9.46 -7.53 -0.07 -9.57 16 8 C 0.14 3.06 6.75 -82.97 -0.56 2.50 16 9 C 0.46 11.83 7.75 -12.26 -0.10 11.73 16 10 O -0.60 -16.81 15.85 5.30 0.08 -16.73 16 11 N -0.51 -13.79 5.26 -11.80 -0.06 -13.86 16 12 C -0.29 -8.06 9.68 -15.04 -0.15 -8.20 16 13 H 0.11 3.19 7.15 -52.49 -0.38 2.82 16 14 C 0.02 0.65 5.50 -17.45 -0.10 0.55 16 15 N -0.87 -23.26 13.04 55.51 0.72 -22.54 16 16 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 17 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 20 C -0.11 -2.08 9.54 -39.42 -0.38 -2.46 16 21 C -0.08 -1.24 9.88 -39.25 -0.39 -1.63 16 22 C -0.07 -1.11 5.75 -106.72 -0.61 -1.72 16 23 C -0.14 -1.92 9.68 -39.40 -0.38 -2.30 16 24 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.35 7.64 -51.93 -0.40 -0.04 16 26 H 0.06 0.35 7.63 -51.93 -0.40 -0.04 16 27 H 0.13 1.21 6.22 -52.49 -0.33 0.88 16 28 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 29 H 0.41 10.79 7.19 -40.82 -0.29 10.50 16 30 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.15 2.56 7.60 -52.49 -0.40 2.16 16 32 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 33 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 295.49 15.07 4.45 4.45 Total: -1.00 -31.61 295.49 -6.35 -37.96 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -3.01 Total: 10.38 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -3.24 Total: -1.49 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.59 Total: -45.97 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.12 Total: -20.53 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.61 -6.35 -37.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355740779.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.819 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds