Wall clock time and date at job start Mon Mar 30 2020 04:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35827 * 116.99935 * 2 1 4 4 C 1.39942 * 119.60914 * 359.97438 * 3 2 1 5 5 C 1.35881 * 121.01258 * 180.02562 * 4 3 2 6 6 C 1.40902 * 119.81020 * 0.02562 * 5 4 3 7 7 N 1.33233 * 120.90902 * 180.25123 * 6 5 4 8 8 C 1.32003 * 121.30659 * 180.25461 * 7 6 5 9 9 C 1.47994 * 119.24739 * 179.75551 * 8 7 6 10 10 O 1.21573 * 119.99919 * 179.72911 * 9 8 7 11 11 N 1.34777 * 119.99804 * 359.72627 * 9 8 7 12 12 C 1.36718 * 119.99897 * 179.72201 * 11 9 8 13 13 H 1.08002 * 119.99547 * 0.27761 * 12 11 9 14 14 C 1.39143 * 120.00337 * 180.27604 * 12 11 9 15 15 N 1.31294 * 119.99814 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00309 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47002 * 0.02562 * 16 14 12 18 18 H 1.48492 * 109.47205 * 120.00196 * 16 14 12 19 19 H 1.48503 * 109.47239 * 240.00268 * 16 14 12 20 20 C 1.40422 * 121.50221 * 359.47900 * 8 7 6 21 21 C 1.36401 * 119.80438 * 0.25497 * 20 8 7 22 22 C 1.40864 * 118.26945 * 0.02562 * 21 20 8 23 23 C 1.36683 * 119.60535 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.47662 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46911 * 300.00497 * 1 2 3 26 26 H 1.09003 * 109.47317 * 59.99977 * 1 2 3 27 27 H 1.07995 * 119.49409 * 0.02562 * 4 3 2 28 28 H 1.08002 * 120.09396 * 179.97438 * 5 4 3 29 29 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 30 30 H 0.97008 * 119.99646 * 179.97438 * 15 14 12 31 31 H 1.07992 * 120.09552 * 180.23386 * 20 8 7 32 32 H 1.07997 * 120.85941 * 179.97438 * 21 20 8 33 33 H 1.08000 * 120.18079 * 359.94850 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2755 2.3787 -0.0005 5 6 1.8625 3.6041 -0.0011 6 6 3.2677 3.7077 -0.0016 7 7 3.8663 4.8980 0.0028 8 6 5.1820 5.0041 -0.0027 9 6 5.7989 6.3494 -0.0028 10 8 7.0093 6.4630 -0.0029 11 7 5.0188 7.4484 -0.0030 12 6 5.5886 8.6912 0.0026 13 1 6.6639 8.7921 0.0026 14 6 4.7833 9.8259 0.0083 15 7 3.4761 9.7031 0.0087 16 14 5.5619 11.5239 0.0152 17 1 7.0409 11.3902 0.0128 18 1 5.1310 12.2710 -1.1936 19 1 5.1329 12.2602 1.2313 20 6 6.0097 3.8698 -0.0026 21 6 5.4531 2.6244 -0.0020 22 6 4.0483 2.5215 -0.0020 23 6 3.4111 1.2724 -0.0005 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.1980 2.3052 -0.0005 28 1 1.2537 4.4962 -0.0019 29 1 4.0530 7.3578 -0.0026 30 1 2.9147 10.4942 0.0130 31 1 7.0836 3.9830 -0.0033 32 1 6.0735 1.7404 -0.0023 33 1 3.9959 0.3644 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355740779.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:08 Heat of formation + Delta-G solvation = -41.469674 kcal Electronic energy + Delta-G solvation = -19437.838023 eV Core-core repulsion = 16234.929946 eV Total energy + Delta-G solvation = -3202.908077 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.095 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.03058 -40.56784 -39.58205 -36.83101 -36.14541 -34.61893 -33.36631 -31.43880 -31.01001 -28.17742 -27.29135 -25.58990 -24.26463 -23.20807 -21.80135 -20.22692 -19.42797 -18.86613 -18.47267 -17.19604 -16.71605 -16.69452 -16.61599 -15.93513 -15.78350 -15.37645 -15.35476 -14.77684 -14.69612 -14.18746 -14.11555 -13.60782 -13.43431 -13.06415 -12.89214 -12.87671 -12.51250 -12.10511 -12.10330 -11.73465 -11.62254 -11.47102 -10.97019 -10.34529 -10.16954 -9.72953 -8.91911 -8.60012 -6.03842 -0.74963 -0.34191 0.93586 1.32007 1.40719 1.57196 1.58481 2.23997 2.29642 2.30863 2.87610 3.00040 3.29547 3.30120 3.58857 3.75236 3.83308 4.00140 4.16933 4.21062 4.41231 4.45834 4.49804 4.66727 4.79722 4.82784 4.97374 5.04858 5.16985 5.18760 5.29888 5.43900 5.65956 5.85713 6.33235 6.42286 6.78444 6.96980 7.40015 7.94972 8.56849 Molecular weight = 272.09amu Principal moments of inertia in cm(-1) A = 0.031348 B = 0.004024 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.996187 B = 6955.862686 C = 7833.706405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.324 6.324 3 C 0.131 3.869 4 C -0.160 4.160 5 C -0.063 4.063 6 C 0.073 3.927 7 N -0.473 5.473 8 C 0.107 3.893 9 C 0.459 3.541 10 O -0.630 6.630 11 N -0.529 5.529 12 C -0.340 4.340 13 H 0.091 0.909 14 C -0.010 4.010 15 N -0.903 5.903 16 Si 1.007 2.993 17 H -0.267 1.267 18 H -0.266 1.266 19 H -0.266 1.266 20 C -0.132 4.132 21 C -0.056 4.056 22 C -0.069 4.069 23 C -0.147 4.147 24 H 0.122 0.878 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.170 0.830 28 H 0.144 0.856 29 H 0.403 0.597 30 H 0.285 0.715 31 H 0.147 0.853 32 H 0.187 0.813 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.055 -18.746 -0.011 20.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.238 6.238 3 C 0.085 3.915 4 C -0.180 4.180 5 C -0.082 4.082 6 C -0.051 4.051 7 N -0.186 5.186 8 C -0.045 4.045 9 C 0.247 3.753 10 O -0.519 6.519 11 N -0.162 5.162 12 C -0.470 4.470 13 H 0.109 0.891 14 C -0.212 4.212 15 N -0.541 5.541 16 Si 0.828 3.172 17 H -0.191 1.191 18 H -0.191 1.191 19 H -0.190 1.190 20 C -0.153 4.153 21 C -0.081 4.081 22 C -0.072 4.072 23 C -0.167 4.167 24 H 0.140 0.860 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.187 0.813 28 H 0.162 0.838 29 H 0.238 0.762 30 H 0.095 0.905 31 H 0.165 0.835 32 H 0.204 0.796 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.977 -17.978 -0.007 20.094 hybrid contribution 0.127 0.560 0.002 0.574 sum -8.850 -17.418 -0.005 19.537 Atomic orbital electron populations 1.23445 0.76149 1.05973 1.02593 1.86076 1.23699 1.25738 1.88245 1.18819 0.92261 0.84856 0.95607 1.21365 1.02153 0.90676 1.03786 1.20898 0.91304 0.99198 0.96811 1.19342 0.95473 0.87957 1.02373 1.67836 1.10925 1.28020 1.11786 1.21361 0.89628 0.94567 0.98918 1.18026 0.86497 0.84247 0.86493 1.90541 1.14644 1.86734 1.59998 1.41907 1.09920 1.04971 1.59416 1.20006 0.94184 0.82830 1.49966 0.89110 1.26402 0.95654 1.04141 0.95014 1.69684 1.04498 1.33130 1.46789 0.84685 0.78390 0.75381 0.78709 1.19148 1.19050 1.19043 1.21782 1.02036 0.91897 0.99607 1.21735 0.93190 0.98073 0.95116 1.18804 0.94671 0.93622 1.00065 1.20214 0.92374 0.96862 1.07214 0.85970 0.91411 0.91400 0.81265 0.83833 0.76190 0.90510 0.83486 0.79554 0.82069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.80 113.37 1.11 1.22 16 2 O -0.32 -5.66 10.47 -91.61 -0.96 -6.62 16 3 C 0.13 2.76 6.64 22.32 0.15 2.90 16 4 C -0.16 -3.29 8.93 22.14 0.20 -3.09 16 5 C -0.06 -1.77 9.98 22.37 0.22 -1.55 16 6 C 0.07 2.55 6.61 40.51 0.27 2.81 16 7 N -0.47 -20.44 9.46 -177.75 -1.68 -22.13 16 8 C 0.11 4.90 6.75 42.24 0.28 5.18 16 9 C 0.46 25.36 7.75 86.83 0.67 26.03 16 10 O -0.63 -37.65 15.85 -3.95 -0.06 -37.71 16 11 N -0.53 -30.58 5.26 -309.53 -1.63 -32.20 16 12 C -0.34 -20.22 9.68 84.15 0.81 -19.40 16 13 H 0.09 5.61 7.15 -2.91 -0.02 5.59 16 14 C -0.01 -0.53 5.50 84.99 0.47 -0.06 16 15 N -0.90 -50.09 13.04 21.69 0.28 -49.80 16 16 Si 1.01 42.80 29.55 68.60 2.03 44.82 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 19 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 20 C -0.13 -4.85 9.54 22.37 0.21 -4.64 16 21 C -0.06 -1.55 9.88 22.48 0.22 -1.32 16 22 C -0.07 -2.02 5.75 -21.22 -0.12 -2.14 16 23 C -0.15 -3.35 9.68 22.39 0.22 -3.14 16 24 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.07 0.50 7.64 -2.39 -0.02 0.48 16 26 H 0.07 0.50 7.63 -2.39 -0.02 0.48 16 27 H 0.17 2.21 6.22 -2.91 -0.02 2.19 16 28 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 29 H 0.40 23.04 7.19 -92.71 -0.67 22.38 16 30 H 0.29 14.44 8.31 -92.70 -0.77 13.67 16 31 H 0.15 5.26 7.60 -2.91 -0.02 5.23 16 32 H 0.19 3.30 8.06 -2.91 -0.02 3.27 16 33 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -74.22 295.49 3.19 -71.02 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.50 Total: 29.81 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 4.72 Total: 2.81 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -3.03 Total: -104.13 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -1.02 Total: -44.33 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -74.22 3.19 -71.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355740779.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.553 kcal (2) G-P(sol) polarization free energy of solvation -74.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds