Wall clock time and date at job start Mon Mar 30 2020 05:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47066 * 2 1 4 4 N 1.46901 * 109.46830 * 239.99963 * 2 1 3 5 5 C 1.46895 * 110.99816 * 85.00098 * 4 2 1 6 6 C 1.50706 * 109.47182 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99302 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00436 * 179.72677 * 6 5 4 9 9 N 1.31515 * 119.99684 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00405 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47050 * 59.99579 * 10 8 6 12 12 H 1.48496 * 109.47289 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46492 * 299.99554 * 10 8 6 14 14 C 1.50697 * 109.46991 * 119.99931 * 2 1 3 15 15 C 1.38283 * 119.93170 * 79.72828 * 14 2 1 16 16 C 1.38127 * 120.06438 * 179.72747 * 15 14 2 17 17 C 1.38830 * 119.93099 * 0.52046 * 16 15 14 18 18 N 1.40196 * 120.06484 * 179.77652 * 17 16 15 19 19 C 1.34726 * 126.83993 * 359.68232 * 18 17 16 20 20 N 1.30851 * 108.02988 * 179.89757 * 19 18 17 21 21 C 1.33256 * 109.84268 * 0.38080 * 20 19 18 22 22 N 1.30742 * 109.00568 * 359.76478 * 21 20 19 23 23 C 1.38836 * 119.87077 * 359.75087 * 17 16 15 24 24 C 1.38121 * 119.93102 * 359.97438 * 23 17 16 25 25 H 1.08998 * 109.47489 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47208 * 300.00289 * 1 2 3 27 27 H 1.08994 * 109.47236 * 59.99824 * 1 2 3 28 28 H 1.00902 * 110.99849 * 208.95476 * 4 2 1 29 29 H 1.09001 * 109.47613 * 60.00104 * 5 4 2 30 30 H 1.08998 * 109.47678 * 300.00000 * 5 4 2 31 31 H 0.97004 * 120.00247 * 180.02562 * 9 8 6 32 32 H 1.07995 * 119.96836 * 359.97438 * 15 14 2 33 33 H 1.08001 * 120.03239 * 180.29513 * 16 15 14 34 34 H 1.07995 * 125.98520 * 0.04378 * 19 18 17 35 35 H 1.08003 * 125.49566 * 179.74161 * 21 20 19 36 36 H 1.08000 * 120.03173 * 180.02562 * 23 17 16 37 37 H 1.08000 * 119.96583 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3468 6 6 2.5884 -0.5215 -3.5558 7 1 2.8379 -1.5695 -3.4793 8 6 2.7269 0.1340 -4.7607 9 7 2.4169 1.4086 -4.8553 10 14 3.3534 -0.7885 -6.2594 11 1 2.4354 -1.9145 -6.5670 12 1 3.4101 0.1348 -7.4210 13 1 4.7122 -1.3192 -5.9815 14 6 2.0323 -0.7104 1.2305 15 6 2.0608 -2.0925 1.2659 16 6 2.5259 -2.7464 2.3902 17 6 2.9549 -2.0147 3.4893 18 7 3.4231 -2.6756 4.6337 19 6 3.5109 -4.0072 4.8184 20 7 3.9979 -4.2190 6.0143 21 6 4.2245 -3.0555 6.6230 22 7 3.8884 -2.0814 5.8182 23 6 2.9198 -0.6273 3.4528 24 6 2.4590 0.0210 2.3236 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 2.9172 -1.1206 -1.0288 29 1 2.7588 1.0462 -2.1183 30 1 1.0870 0.6164 -2.5525 31 1 2.5140 1.8698 -5.7031 32 1 1.7228 -2.6611 0.4123 33 1 2.5524 -3.8257 2.4156 34 1 3.2308 -4.7668 4.1036 35 1 4.6214 -2.9363 7.6203 36 1 3.2533 -0.0555 4.3062 37 1 2.4311 1.1003 2.2948 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025367476.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:18 Heat of formation + Delta-G solvation = 117.943302 kcal Electronic energy + Delta-G solvation = -19477.744675 eV Core-core repulsion = 16449.875109 eV Total energy + Delta-G solvation = -3027.869566 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.52880 -39.64302 -36.41256 -34.03657 -32.66395 -31.85970 -30.93119 -30.35436 -28.39319 -26.21408 -24.39351 -23.62484 -22.38324 -21.58530 -21.16870 -19.93637 -18.58449 -16.80762 -16.05318 -15.95846 -15.60942 -15.33436 -14.67331 -14.38472 -14.25127 -14.04617 -13.60871 -13.50356 -12.93396 -12.74009 -12.46547 -12.31819 -11.69345 -11.57030 -11.45715 -11.17811 -10.91621 -10.73830 -10.68970 -10.44679 -10.35032 -10.14834 -9.92309 -9.25736 -9.13306 -8.52966 -8.34258 -7.43506 -6.07946 -4.10271 0.54744 1.22659 1.83408 1.96577 2.63223 3.30433 3.34710 3.37265 3.63296 3.97279 4.20154 4.38431 4.57317 4.69386 4.81392 4.86132 5.11585 5.28298 5.30723 5.31959 5.51258 5.70889 5.80980 5.84726 5.92664 6.02315 6.13440 6.19706 6.24166 6.37190 6.52609 6.57630 6.67000 6.88583 7.18739 7.34260 7.72057 7.72516 8.06483 8.29393 8.51452 8.98299 9.54862 11.03092 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031769 B = 0.003238 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.160266 B = 8645.791066 C = 9105.378597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.116 3.884 3 H 0.047 0.953 4 N -0.682 5.682 5 C 0.195 3.805 6 C -0.516 4.516 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.899 3.101 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C -0.071 4.071 15 C -0.073 4.073 16 C -0.131 4.131 17 C 0.129 3.871 18 N -0.321 5.321 19 C 0.258 3.742 20 N -0.542 5.542 21 C 0.200 3.800 22 N -0.316 5.316 23 C -0.110 4.110 24 C -0.096 4.096 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.331 0.669 29 H -0.013 1.013 30 H 0.030 0.970 31 H 0.262 0.738 32 H 0.148 0.852 33 H 0.130 0.870 34 H 0.222 0.778 35 H 0.221 0.779 36 H 0.134 0.866 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.107 -6.854 18.412 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.006 3.994 3 H 0.065 0.935 4 N -0.313 5.313 5 C 0.068 3.932 6 C -0.555 4.555 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.727 3.273 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.072 4.072 15 C -0.092 4.092 16 C -0.152 4.152 17 C 0.037 3.963 18 N -0.104 5.104 19 C -0.037 4.037 20 N -0.269 5.269 21 C -0.102 4.102 22 N -0.142 5.142 23 C -0.130 4.130 24 C -0.115 4.115 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.148 0.852 29 H 0.005 0.995 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.166 0.834 33 H 0.148 0.852 34 H 0.239 0.761 35 H 0.237 0.763 36 H 0.152 0.848 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.604 -6.494 18.436 19.556 hybrid contribution 1.093 0.090 -0.783 1.347 sum 0.488 -6.404 17.653 18.785 Atomic orbital electron populations 1.21747 0.94019 1.02108 1.01021 1.20497 0.95975 0.95406 0.87498 0.93549 1.60863 1.32534 1.34620 1.03296 1.19606 0.96638 0.90175 0.86774 1.21128 1.43614 0.96773 0.93965 0.91994 1.24980 0.95591 0.94908 0.99018 1.69947 1.48590 1.09143 1.26011 0.86542 0.79360 0.79503 0.81891 1.20131 1.21337 1.20253 1.20383 0.96903 0.94093 0.95854 1.21025 0.96929 0.94149 0.97126 1.20824 1.02175 0.99860 0.92359 1.17570 1.02090 0.92316 0.84315 1.47751 1.45552 1.05631 1.11507 1.26190 0.96043 0.85804 0.95626 1.70620 1.21638 1.28517 1.06086 1.26133 0.98253 0.85153 1.00695 1.78120 1.21017 1.22281 0.92804 1.20830 1.01001 0.91728 0.99454 1.21040 0.97928 1.00419 0.92093 0.92235 0.93494 0.91839 0.85221 0.99545 0.95146 0.92803 0.83436 0.85205 0.76138 0.76260 0.84766 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.39 37.16 0.35 -1.63 16 2 C 0.12 1.89 2.81 -68.87 -0.19 1.69 16 3 H 0.05 0.80 7.66 -51.93 -0.40 0.40 16 4 N -0.68 -13.43 5.69 -109.22 -0.62 -14.05 16 5 C 0.19 4.86 5.24 -4.98 -0.03 4.83 16 6 C -0.52 -14.16 9.32 -34.44 -0.32 -14.48 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 10 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 C -0.07 -0.97 4.71 -104.59 -0.49 -1.46 16 15 C -0.07 -0.90 9.00 -39.61 -0.36 -1.26 16 16 C -0.13 -1.39 9.47 -39.40 -0.37 -1.77 16 17 C 0.13 1.54 6.70 -83.59 -0.56 0.98 16 18 N -0.32 -3.79 3.82 -11.81 -0.05 -3.84 16 19 C 0.26 2.58 11.98 -90.37 -1.08 1.49 16 20 N -0.54 -6.09 11.19 -15.75 -0.18 -6.26 16 21 C 0.20 2.08 13.03 -91.78 -1.20 0.89 16 22 N -0.32 -3.92 12.06 29.30 0.35 -3.57 16 23 C -0.11 -1.34 9.68 -39.40 -0.38 -1.72 16 24 C -0.10 -1.18 9.66 -39.61 -0.38 -1.56 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.07 7.45 -51.93 -0.39 0.68 16 28 H 0.33 6.32 7.99 -39.29 -0.31 6.01 16 29 H -0.01 -0.35 8.06 -51.93 -0.42 -0.77 16 30 H 0.03 0.82 7.44 -51.93 -0.39 0.43 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.15 1.82 7.72 -52.49 -0.41 1.41 16 33 H 0.13 0.97 6.81 -52.49 -0.36 0.62 16 34 H 0.22 1.26 7.10 -52.49 -0.37 0.89 16 35 H 0.22 1.38 8.06 -52.48 -0.42 0.96 16 36 H 0.13 1.58 7.74 -52.49 -0.41 1.18 16 37 H 0.13 1.44 8.03 -52.49 -0.42 1.02 16 LS Contribution 319.81 15.07 4.82 4.82 Total: -1.00 -31.76 319.81 -9.75 -41.50 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.68 Total: 3.25 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -5.11 Total: -12.51 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.25 Total: -53.30 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.76 -9.75 -41.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025367476.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.446 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds