Wall clock time and date at job start Mon Mar 30 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47066 * 2 1 4 4 N 1.46901 * 109.46830 * 239.99963 * 2 1 3 5 5 C 1.46895 * 110.99816 * 85.00098 * 4 2 1 6 6 C 1.50706 * 109.47182 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99302 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00436 * 179.72677 * 6 5 4 9 9 N 1.31515 * 119.99684 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00405 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47050 * 59.99579 * 10 8 6 12 12 H 1.48496 * 109.47289 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46492 * 299.99554 * 10 8 6 14 14 C 1.50697 * 109.46991 * 119.99931 * 2 1 3 15 15 C 1.38283 * 119.93170 * 79.72828 * 14 2 1 16 16 C 1.38127 * 120.06438 * 179.72747 * 15 14 2 17 17 C 1.38830 * 119.93099 * 0.52046 * 16 15 14 18 18 N 1.40196 * 120.06484 * 179.77652 * 17 16 15 19 19 C 1.34726 * 126.83993 * 359.68232 * 18 17 16 20 20 N 1.30851 * 108.02988 * 179.89757 * 19 18 17 21 21 C 1.33256 * 109.84268 * 0.38080 * 20 19 18 22 22 N 1.30742 * 109.00568 * 359.76478 * 21 20 19 23 23 C 1.38836 * 119.87077 * 359.75087 * 17 16 15 24 24 C 1.38121 * 119.93102 * 359.97438 * 23 17 16 25 25 H 1.08998 * 109.47489 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47208 * 300.00289 * 1 2 3 27 27 H 1.08994 * 109.47236 * 59.99824 * 1 2 3 28 28 H 1.00902 * 110.99849 * 208.95476 * 4 2 1 29 29 H 1.09001 * 109.47613 * 60.00104 * 5 4 2 30 30 H 1.08998 * 109.47678 * 300.00000 * 5 4 2 31 31 H 0.97004 * 120.00247 * 180.02562 * 9 8 6 32 32 H 1.07995 * 119.96836 * 359.97438 * 15 14 2 33 33 H 1.08001 * 120.03239 * 180.29513 * 16 15 14 34 34 H 1.07995 * 125.98520 * 0.04378 * 19 18 17 35 35 H 1.08003 * 125.49566 * 179.74161 * 21 20 19 36 36 H 1.08000 * 120.03173 * 180.02562 * 23 17 16 37 37 H 1.08000 * 119.96583 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3468 6 6 2.5884 -0.5215 -3.5558 7 1 2.8379 -1.5695 -3.4793 8 6 2.7269 0.1340 -4.7607 9 7 2.4169 1.4086 -4.8553 10 14 3.3534 -0.7885 -6.2594 11 1 2.4354 -1.9145 -6.5670 12 1 3.4101 0.1348 -7.4210 13 1 4.7122 -1.3192 -5.9815 14 6 2.0323 -0.7104 1.2305 15 6 2.0608 -2.0925 1.2659 16 6 2.5259 -2.7464 2.3902 17 6 2.9549 -2.0147 3.4893 18 7 3.4231 -2.6756 4.6337 19 6 3.5109 -4.0072 4.8184 20 7 3.9979 -4.2190 6.0143 21 6 4.2245 -3.0555 6.6230 22 7 3.8884 -2.0814 5.8182 23 6 2.9198 -0.6273 3.4528 24 6 2.4590 0.0210 2.3236 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 2.9172 -1.1206 -1.0288 29 1 2.7588 1.0462 -2.1183 30 1 1.0870 0.6164 -2.5525 31 1 2.5140 1.8698 -5.7031 32 1 1.7228 -2.6611 0.4123 33 1 2.5524 -3.8257 2.4156 34 1 3.2308 -4.7668 4.1036 35 1 4.6214 -2.9363 7.6203 36 1 3.2533 -0.0555 4.3062 37 1 2.4311 1.1003 2.2948 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025367476.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:17 Heat of formation + Delta-G solvation = 100.298177 kcal Electronic energy + Delta-G solvation = -19478.509825 eV Core-core repulsion = 16449.875109 eV Total energy + Delta-G solvation = -3028.634716 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.32601 -40.63799 -37.77050 -35.38156 -34.36631 -32.70141 -31.87922 -31.78837 -29.47245 -28.09589 -25.45798 -24.53495 -23.92366 -22.72052 -22.11119 -21.17690 -19.43231 -18.68117 -17.11000 -16.87918 -16.83855 -16.52162 -16.37497 -15.44071 -15.18665 -15.11916 -14.96711 -14.49779 -14.31757 -14.13870 -13.69292 -13.49548 -13.28682 -13.03978 -12.92674 -12.65704 -12.43627 -12.17711 -11.93124 -11.72411 -11.68530 -11.27301 -11.17477 -10.97461 -10.63837 -10.04490 -9.29878 -9.14702 -8.21046 -6.31812 -0.32570 0.30975 0.96720 1.16509 1.42942 1.45943 1.53761 1.86866 2.41136 2.69050 3.12886 3.35014 3.40293 3.48654 3.72674 3.81065 3.98898 4.04123 4.30682 4.40132 4.52577 4.54987 4.61594 4.86483 4.97095 4.98978 5.02528 5.13944 5.16419 5.31038 5.35138 5.37211 5.38858 5.56222 5.65564 5.68448 6.01365 6.05191 6.45445 6.72674 6.90586 6.94240 7.39186 8.90324 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031769 B = 0.003238 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.160266 B = 8645.791066 C = 9105.378597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.117 3.883 3 H 0.032 0.968 4 N -0.674 5.674 5 C 0.210 3.790 6 C -0.534 4.534 7 H 0.067 0.933 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.971 3.029 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.267 1.267 14 C -0.085 4.085 15 C -0.075 4.075 16 C -0.119 4.119 17 C 0.128 3.872 18 N -0.335 5.335 19 C 0.265 3.735 20 N -0.563 5.563 21 C 0.203 3.797 22 N -0.351 5.351 23 C -0.118 4.118 24 C -0.096 4.096 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.335 0.665 29 H -0.042 1.042 30 H 0.004 0.996 31 H 0.264 0.736 32 H 0.148 0.852 33 H 0.167 0.833 34 H 0.261 0.739 35 H 0.252 0.748 36 H 0.134 0.866 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.337 -9.146 19.144 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.008 3.992 3 H 0.050 0.950 4 N -0.305 5.305 5 C 0.083 3.917 6 C -0.573 4.573 7 H 0.085 0.915 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.795 3.205 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.191 1.191 14 C -0.086 4.086 15 C -0.094 4.094 16 C -0.140 4.140 17 C 0.036 3.964 18 N -0.118 5.118 19 C -0.029 4.029 20 N -0.290 5.290 21 C -0.098 4.098 22 N -0.177 5.177 23 C -0.138 4.138 24 C -0.115 4.115 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.153 0.847 29 H -0.025 1.025 30 H 0.022 0.978 31 H 0.073 0.927 32 H 0.166 0.834 33 H 0.184 0.816 34 H 0.277 0.723 35 H 0.268 0.732 36 H 0.152 0.848 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.161 -8.799 19.199 21.120 hybrid contribution 0.961 0.770 -0.864 1.504 sum 0.800 -8.029 18.334 20.031 Atomic orbital electron populations 1.21699 0.93187 1.02498 1.00967 1.20478 0.96624 0.94733 0.87407 0.95014 1.60725 1.32705 1.33576 1.03489 1.19221 0.94117 0.89947 0.88461 1.21539 1.43553 0.97191 0.94989 0.91455 1.25934 0.95668 0.95729 1.02377 1.70084 1.49711 1.10855 1.26894 0.85411 0.79147 0.78205 0.77697 1.19180 1.21101 1.19143 1.20100 0.98830 0.94754 0.94949 1.21050 0.97065 0.93475 0.97823 1.21073 1.00439 1.01567 0.90878 1.17738 1.01505 0.92336 0.84792 1.47798 1.46365 1.06279 1.11406 1.27039 0.94285 0.85773 0.95836 1.70677 1.22542 1.28895 1.06876 1.26829 0.96892 0.84584 1.01538 1.78092 1.22455 1.23587 0.93553 1.20864 1.01303 0.92310 0.99286 1.21063 0.97701 1.00854 0.91858 0.91563 0.91069 0.94320 0.84720 1.02486 0.97772 0.92694 0.83434 0.81571 0.72334 0.73239 0.84828 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 9.39 71.98 0.68 -3.13 16 2 C 0.12 3.86 2.81 44.17 0.12 3.98 16 3 H 0.03 1.14 7.66 -2.39 -0.02 1.12 16 4 N -0.67 -26.95 5.69 -499.48 -2.84 -29.79 16 5 C 0.21 10.90 5.24 85.56 0.45 11.35 16 6 C -0.53 -29.66 9.32 25.60 0.24 -29.42 16 7 H 0.07 3.58 7.81 -2.91 -0.02 3.56 16 8 C 0.00 0.06 5.46 84.65 0.46 0.52 16 9 N -0.94 -55.95 13.29 21.45 0.28 -55.66 16 10 Si 0.97 43.47 29.54 68.60 2.03 45.49 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 13 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 14 C -0.09 -2.25 4.71 -19.85 -0.09 -2.34 16 15 C -0.08 -1.71 9.00 22.25 0.20 -1.51 16 16 C -0.12 -2.18 9.47 22.39 0.21 -1.97 16 17 C 0.13 2.79 6.70 38.09 0.26 3.05 16 18 N -0.33 -7.19 3.82 -191.27 -0.73 -7.92 16 19 C 0.26 4.47 11.98 180.26 2.16 6.63 16 20 N -0.56 -11.26 11.19 -203.74 -2.28 -13.54 16 21 C 0.20 3.84 13.03 180.75 2.35 6.19 16 22 N -0.35 -8.19 12.06 -61.22 -0.74 -8.93 16 23 C -0.12 -2.75 9.68 22.39 0.22 -2.53 16 24 C -0.10 -2.31 9.66 22.25 0.21 -2.09 16 25 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.04 1.34 7.45 -2.39 -0.02 1.32 16 28 H 0.34 12.84 7.99 -89.69 -0.72 12.12 16 29 H -0.04 -2.41 8.06 -2.39 -0.02 -2.42 16 30 H 0.00 0.24 7.44 -2.39 -0.02 0.22 16 31 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 32 H 0.15 3.36 7.72 -2.91 -0.02 3.33 16 33 H 0.17 1.74 6.81 -2.91 -0.02 1.72 16 34 H 0.26 1.81 7.10 -2.91 -0.02 1.79 16 35 H 0.25 2.58 8.06 -2.91 -0.02 2.56 16 36 H 0.13 3.10 7.74 -2.91 -0.02 3.07 16 37 H 0.14 3.03 8.03 -2.91 -0.02 3.00 16 Total: -1.00 -69.37 319.81 3.56 -65.81 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.37 Total: 15.80 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 7.47 Total: -11.26 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -6.30 Total: -115.84 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -69.37 3.56 -65.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025367476.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.109 kcal (2) G-P(sol) polarization free energy of solvation -69.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds