Wall clock time and date at job start Mon Mar 30 2020 04:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48503 * 109.47302 * 269.99327 * 3 2 1 5 5 H 1.48495 * 109.47197 * 29.99798 * 3 2 1 6 6 H 1.48503 * 109.46924 * 149.99633 * 3 2 1 7 7 C 1.38819 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99517 * 197.37063 * 7 2 1 9 9 N 1.36936 * 119.99953 * 17.37021 * 7 2 1 10 10 C 1.46927 * 120.62920 * 207.68876 * 9 7 2 11 11 C 1.53188 * 108.77378 * 233.58293 * 10 9 7 12 12 C 1.53037 * 109.31414 * 305.36435 * 11 10 9 13 13 C 1.50703 * 109.46146 * 181.38153 * 12 11 10 14 14 N 1.30799 * 126.24976 * 300.04633 * 13 12 11 15 15 N 1.28685 * 110.29333 * 179.97438 * 14 13 12 16 16 C 1.32303 * 109.48149 * 359.97438 * 15 14 13 17 17 C 1.40819 * 133.46808 * 180.02562 * 16 15 14 18 18 C 1.36010 * 119.22841 * 180.25233 * 17 16 15 19 19 C 1.40555 * 119.74662 * 359.48231 * 18 17 16 20 20 C 1.34949 * 120.36366 * 0.54548 * 19 18 17 21 21 N 1.36066 * 126.24605 * 119.99994 * 13 12 11 22 22 C 1.53038 * 109.53804 * 61.36706 * 12 11 10 23 23 C 1.46925 * 120.63243 * 27.66239 * 9 7 2 24 24 H 0.97000 * 119.99639 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.58940 * 113.79799 * 10 9 7 26 26 H 1.08997 * 109.58577 * 353.37335 * 10 9 7 27 27 H 1.08995 * 109.49840 * 185.41081 * 11 10 9 28 28 H 1.09008 * 109.52350 * 65.33507 * 11 10 9 29 29 H 1.08994 * 109.46644 * 301.35882 * 12 11 10 30 30 H 1.08005 * 120.38045 * 359.97438 * 17 16 15 31 31 H 1.08007 * 120.12941 * 179.72172 * 18 17 16 32 32 H 1.08000 * 119.81445 * 180.27469 * 19 18 17 33 33 H 1.08000 * 119.74533 * 179.73151 * 20 19 18 34 34 H 1.09001 * 109.50475 * 58.58355 * 22 12 11 35 35 H 1.08996 * 109.50355 * 178.68172 * 22 12 11 36 36 H 1.09004 * 109.58727 * 246.20735 * 23 9 7 37 37 H 1.09004 * 109.58287 * 6.62517 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2798 9 7 1.3724 -2.3612 -0.3530 10 6 1.8192 -3.6547 0.1818 11 6 2.0741 -4.6103 -0.9880 12 6 0.8185 -4.6903 -1.8591 13 6 1.0540 -5.6558 -2.9921 14 7 1.9788 -5.5580 -3.9119 15 7 1.9030 -6.5498 -4.7283 16 6 0.9099 -7.3451 -4.3653 17 6 0.3905 -8.5459 -4.8861 18 6 -0.6702 -9.1332 -4.2699 19 6 -1.2240 -8.5425 -3.1210 20 6 -0.7160 -7.3913 -2.6335 21 7 0.3441 -6.7888 -3.2443 22 6 0.5007 -3.3054 -2.4273 23 6 0.2278 -2.3349 -1.2739 24 1 -0.4849 0.8401 -0.0004 25 1 1.0468 -4.0686 0.8301 26 1 2.7399 -3.5173 0.7488 27 1 2.3133 -5.6014 -0.6026 28 1 2.9082 -4.2411 -1.5849 29 1 -0.0207 -5.0363 -1.2558 30 1 0.8267 -8.9929 -5.7673 31 1 -1.0831 -10.0521 -4.6596 32 1 -2.0636 -9.0103 -2.6283 33 1 -1.1521 -6.9438 -1.7526 34 1 1.3493 -2.9478 -3.0105 35 1 -0.3801 -3.3676 -3.0664 36 1 -0.6744 -2.6411 -0.7443 37 1 0.0986 -1.3266 -1.6673 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070754711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:06 Heat of formation + Delta-G solvation = 124.957150 kcal Electronic energy + Delta-G solvation = -20620.312397 eV Core-core repulsion = 17592.746975 eV Total energy + Delta-G solvation = -3027.565423 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.48954 -38.32227 -37.59666 -34.34797 -33.21153 -31.32617 -30.74474 -29.88887 -28.68125 -25.49925 -24.31144 -23.29794 -22.99800 -22.18870 -20.95554 -19.04659 -18.05678 -17.20250 -16.71527 -16.42415 -15.97150 -15.01787 -14.94284 -14.42300 -13.84856 -13.55079 -13.10092 -12.87135 -12.82288 -12.49177 -12.47851 -12.18219 -11.52657 -11.48060 -11.29589 -11.04416 -10.90896 -10.72935 -10.43950 -10.31301 -10.18859 -10.01535 -9.73245 -9.59667 -9.46897 -8.47876 -8.04810 -6.70285 -5.79454 -3.21256 0.48259 1.05476 2.29121 2.79402 3.23872 3.40520 3.47478 3.48479 3.99970 4.32759 4.40935 4.50837 4.63610 4.73790 4.78499 5.18524 5.35476 5.39208 5.44808 5.45486 5.60159 5.71763 5.77699 5.91211 6.04312 6.07269 6.20345 6.25588 6.39796 6.52586 6.60739 6.65867 6.72575 6.88459 6.95524 7.34064 7.61407 7.80813 8.44316 8.66158 9.20613 9.83747 10.39564 11.29452 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.039968 B = 0.004194 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.386869 B = 6675.030358 C = 6863.420537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.148 3.852 11 C -0.121 4.121 12 C 0.011 3.989 13 C 0.172 3.828 14 N -0.246 5.246 15 N -0.293 5.293 16 C 0.177 3.823 17 C -0.078 4.078 18 C -0.094 4.094 19 C -0.147 4.147 20 C 0.074 3.926 21 N -0.394 5.394 22 C -0.129 4.129 23 C 0.173 3.827 24 H 0.254 0.746 25 H 0.018 0.982 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.169 0.831 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.019 0.981 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.854 -18.356 -5.353 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.021 3.979 11 C -0.161 4.161 12 C -0.010 4.010 13 C -0.091 4.091 14 N -0.084 5.084 15 N -0.138 5.138 16 C -0.072 4.072 17 C -0.099 4.099 18 C -0.119 4.119 19 C -0.169 4.169 20 C -0.048 4.048 21 N -0.074 5.074 22 C -0.169 4.169 23 C 0.047 3.953 24 H 0.064 0.936 25 H 0.036 0.964 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.171 0.829 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.186 0.814 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.037 0.963 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.631 -17.488 -6.125 18.882 hybrid contribution -0.791 0.208 0.618 1.025 sum -4.422 -17.280 -5.507 18.667 Atomic orbital electron populations 1.70024 1.05276 1.25533 1.54062 1.25021 0.95288 0.98425 1.00841 0.86281 0.79125 0.83553 0.77776 1.21369 1.21816 1.20389 1.19221 0.92813 0.84811 1.41270 0.91514 1.44059 1.35803 1.01458 1.50069 1.20895 0.97932 0.86733 0.92334 1.22089 0.96271 0.99359 0.98399 1.19728 0.99805 0.92107 0.89342 1.25575 0.92656 0.88785 1.02059 1.74249 1.17437 1.15541 1.01129 1.74967 1.15872 1.01305 1.21631 1.22349 0.96496 0.98875 0.89529 1.20239 0.96917 0.91553 1.01232 1.21129 0.95355 1.00314 0.95084 1.20889 1.02322 0.95408 0.98283 1.21723 0.88798 0.95099 0.99225 1.43866 1.23210 1.18747 1.21618 1.22291 1.00945 0.93249 1.00397 1.20804 0.88628 0.98337 0.87553 0.93639 0.96406 0.92217 0.93266 0.90801 0.90472 0.82915 0.83792 0.82898 0.81371 0.91127 0.93408 0.96317 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.95 11.19 55.49 0.62 -25.32 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.88 9.59 -15.06 -0.14 -7.02 16 8 H 0.07 1.80 7.89 -52.49 -0.41 1.39 16 9 N -0.59 -14.62 2.99 -172.32 -0.52 -15.14 16 10 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 11 C -0.12 -2.17 5.34 -26.61 -0.14 -2.31 16 12 C 0.01 0.20 2.58 -91.73 -0.24 -0.04 16 13 C 0.17 2.95 6.64 -154.22 -1.02 1.93 16 14 N -0.25 -4.80 12.19 32.94 0.40 -4.40 16 15 N -0.29 -5.38 12.31 31.14 0.38 -5.00 16 16 C 0.18 2.64 7.92 -156.06 -1.24 1.41 16 17 C -0.08 -0.80 10.11 -39.41 -0.40 -1.20 16 18 C -0.09 -0.69 10.07 -39.51 -0.40 -1.09 16 19 C -0.15 -1.09 9.98 -39.88 -0.40 -1.49 16 20 C 0.07 0.76 10.78 -16.70 -0.18 0.58 16 21 N -0.39 -5.70 2.95 -59.73 -0.18 -5.87 16 22 C -0.13 -2.53 5.34 -26.61 -0.14 -2.67 16 23 C 0.17 4.04 5.31 -3.71 -0.02 4.02 16 24 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.46 8.14 -51.92 -0.42 1.03 16 29 H 0.08 1.19 7.53 -51.93 -0.39 0.80 16 30 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 31 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 32 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 33 H 0.17 1.33 7.63 -52.49 -0.40 0.93 16 34 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.09 2.46 6.04 -51.93 -0.31 2.14 16 LS Contribution 305.96 15.07 4.61 4.61 Total: -1.00 -32.95 305.96 -9.00 -41.96 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -4.87 Total: -2.66 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -4.43 Total: -4.91 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.71 Total: -55.74 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.95 -9.00 -41.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070754711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.913 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds