Wall clock time and date at job start Mon Mar 30 2020 04:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48503 * 109.47302 * 269.99327 * 3 2 1 5 5 H 1.48495 * 109.47197 * 29.99798 * 3 2 1 6 6 H 1.48503 * 109.46924 * 149.99633 * 3 2 1 7 7 C 1.38819 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99517 * 197.37063 * 7 2 1 9 9 N 1.36936 * 119.99953 * 17.37021 * 7 2 1 10 10 C 1.46927 * 120.62920 * 207.68876 * 9 7 2 11 11 C 1.53188 * 108.77378 * 233.58293 * 10 9 7 12 12 C 1.53037 * 109.31414 * 305.36435 * 11 10 9 13 13 C 1.50703 * 109.46146 * 181.38153 * 12 11 10 14 14 N 1.30799 * 126.24976 * 300.04633 * 13 12 11 15 15 N 1.28685 * 110.29333 * 179.97438 * 14 13 12 16 16 C 1.32303 * 109.48149 * 359.97438 * 15 14 13 17 17 C 1.40819 * 133.46808 * 180.02562 * 16 15 14 18 18 C 1.36010 * 119.22841 * 180.25233 * 17 16 15 19 19 C 1.40555 * 119.74662 * 359.48231 * 18 17 16 20 20 C 1.34949 * 120.36366 * 0.54548 * 19 18 17 21 21 N 1.36066 * 126.24605 * 119.99994 * 13 12 11 22 22 C 1.53038 * 109.53804 * 61.36706 * 12 11 10 23 23 C 1.46925 * 120.63243 * 27.66239 * 9 7 2 24 24 H 0.97000 * 119.99639 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.58940 * 113.79799 * 10 9 7 26 26 H 1.08997 * 109.58577 * 353.37335 * 10 9 7 27 27 H 1.08995 * 109.49840 * 185.41081 * 11 10 9 28 28 H 1.09008 * 109.52350 * 65.33507 * 11 10 9 29 29 H 1.08994 * 109.46644 * 301.35882 * 12 11 10 30 30 H 1.08005 * 120.38045 * 359.97438 * 17 16 15 31 31 H 1.08007 * 120.12941 * 179.72172 * 18 17 16 32 32 H 1.08000 * 119.81445 * 180.27469 * 19 18 17 33 33 H 1.08000 * 119.74533 * 179.73151 * 20 19 18 34 34 H 1.09001 * 109.50475 * 58.58355 * 22 12 11 35 35 H 1.08996 * 109.50355 * 178.68172 * 22 12 11 36 36 H 1.09004 * 109.58727 * 246.20735 * 23 9 7 37 37 H 1.09004 * 109.58287 * 6.62517 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2798 9 7 1.3724 -2.3612 -0.3530 10 6 1.8192 -3.6547 0.1818 11 6 2.0741 -4.6103 -0.9880 12 6 0.8185 -4.6903 -1.8591 13 6 1.0540 -5.6558 -2.9921 14 7 1.9788 -5.5580 -3.9119 15 7 1.9030 -6.5498 -4.7283 16 6 0.9099 -7.3451 -4.3653 17 6 0.3905 -8.5459 -4.8861 18 6 -0.6702 -9.1332 -4.2699 19 6 -1.2240 -8.5425 -3.1210 20 6 -0.7160 -7.3913 -2.6335 21 7 0.3441 -6.7888 -3.2443 22 6 0.5007 -3.3054 -2.4273 23 6 0.2278 -2.3349 -1.2739 24 1 -0.4849 0.8401 -0.0004 25 1 1.0468 -4.0686 0.8301 26 1 2.7399 -3.5173 0.7488 27 1 2.3133 -5.6014 -0.6026 28 1 2.9082 -4.2411 -1.5849 29 1 -0.0207 -5.0363 -1.2558 30 1 0.8267 -8.9929 -5.7673 31 1 -1.0831 -10.0521 -4.6596 32 1 -2.0636 -9.0103 -2.6283 33 1 -1.1521 -6.9438 -1.7526 34 1 1.3493 -2.9478 -3.0105 35 1 -0.3801 -3.3676 -3.0664 36 1 -0.6744 -2.6411 -0.7443 37 1 0.0986 -1.3266 -1.6673 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070754711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:05 Heat of formation + Delta-G solvation = 105.846440 kcal Electronic energy + Delta-G solvation = -20621.141100 eV Core-core repulsion = 17592.746975 eV Total energy + Delta-G solvation = -3028.394125 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.56222 -39.47990 -38.97582 -35.74193 -34.59356 -32.82170 -31.93645 -31.56944 -29.93589 -27.26213 -25.17235 -24.65823 -24.20613 -23.86414 -22.32679 -20.63744 -19.05721 -18.73925 -17.96402 -17.53633 -16.94488 -16.63067 -15.90675 -15.82742 -15.40221 -15.33731 -14.81414 -14.45086 -14.17926 -13.56402 -13.43772 -13.26111 -13.12749 -12.93178 -12.62803 -12.57968 -12.46704 -12.24918 -12.07921 -12.02138 -11.82172 -11.52840 -11.37266 -11.33182 -10.58233 -10.49766 -9.03265 -8.70292 -7.88379 -5.32056 -0.26564 0.14036 1.30877 1.46584 1.49601 1.56986 1.65377 2.40723 2.51493 3.03286 3.26675 3.40903 3.54892 3.62157 3.69268 3.91797 3.97268 4.10708 4.13390 4.23823 4.44879 4.62694 4.65365 4.74205 4.83206 4.93876 4.97129 4.99634 5.04150 5.06352 5.15122 5.19680 5.34108 5.47725 5.52460 5.64818 5.71812 5.93966 6.39252 7.14852 7.50460 7.85393 8.36079 9.18407 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.039968 B = 0.004194 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.386869 B = 6675.030358 C = 6863.420537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.046 4.046 3 Si 0.962 3.038 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.264 4.264 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.146 3.854 11 C -0.107 4.107 12 C 0.024 3.976 13 C 0.153 3.847 14 N -0.287 5.287 15 N -0.350 5.350 16 C 0.178 3.822 17 C -0.109 4.109 18 C -0.059 4.059 19 C -0.123 4.123 20 C 0.041 3.959 21 N -0.393 5.393 22 C -0.113 4.113 23 C 0.182 3.818 24 H 0.251 0.749 25 H 0.032 0.968 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.102 0.898 30 H 0.171 0.829 31 H 0.193 0.807 32 H 0.201 0.799 33 H 0.190 0.810 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.013 0.987 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.617 -21.643 -5.136 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.242 4.242 3 Si 0.791 3.209 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.394 4.394 8 H 0.082 0.918 9 N -0.334 5.334 10 C 0.021 3.979 11 C -0.147 4.147 12 C 0.003 3.997 13 C -0.111 4.111 14 N -0.125 5.125 15 N -0.195 5.195 16 C -0.072 4.072 17 C -0.131 4.131 18 C -0.084 4.084 19 C -0.144 4.144 20 C -0.081 4.081 21 N -0.073 5.073 22 C -0.153 4.153 23 C 0.056 3.944 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.189 0.811 31 H 0.210 0.790 32 H 0.218 0.782 33 H 0.207 0.793 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.031 0.969 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.387 -20.808 -5.904 22.290 hybrid contribution -0.395 0.979 0.537 1.184 sum -5.781 -19.829 -5.367 21.341 Atomic orbital electron populations 1.70149 1.06437 1.25849 1.55298 1.25701 0.96054 1.01201 1.01208 0.85339 0.78282 0.79883 0.77405 1.21648 1.21805 1.19393 1.19506 0.93004 0.86228 1.40694 0.91793 1.44302 1.35971 1.02316 1.50832 1.21028 0.98071 0.85409 0.93387 1.21887 0.95958 0.99739 0.97160 1.19478 1.00057 0.90644 0.89509 1.25101 0.93693 0.90245 1.02087 1.74087 1.19185 1.16927 1.02319 1.74819 1.18876 1.02636 1.23157 1.23007 0.95443 0.99429 0.89288 1.20675 0.98770 0.90668 1.02941 1.21795 0.92608 1.00542 0.93408 1.21592 1.02011 0.93500 0.97288 1.22479 0.88405 0.96568 1.00602 1.43911 1.23816 1.17946 1.21598 1.22003 1.00367 0.94216 0.98729 1.20568 0.88259 0.97277 0.88284 0.94034 0.95002 0.92346 0.90604 0.93278 0.87996 0.81146 0.78995 0.78215 0.79292 0.93747 0.92141 0.96853 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.85 11.19 21.65 0.24 -54.61 16 2 C -0.05 -2.59 4.91 84.86 0.42 -2.18 16 3 Si 0.96 45.70 29.59 68.60 2.03 47.73 16 4 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.26 -14.79 9.59 84.04 0.81 -13.98 16 8 H 0.06 3.53 7.89 -2.91 -0.02 3.50 16 9 N -0.61 -30.88 2.99 -699.09 -2.09 -32.97 16 10 C 0.15 5.98 6.52 86.36 0.56 6.54 16 11 C -0.11 -3.84 5.34 30.67 0.16 -3.68 16 12 C 0.02 0.82 2.58 -11.51 -0.03 0.79 16 13 C 0.15 5.26 6.64 137.71 0.91 6.18 16 14 N -0.29 -11.70 12.19 -49.68 -0.61 -12.31 16 15 N -0.35 -13.29 12.31 -55.40 -0.68 -13.97 16 16 C 0.18 5.16 7.92 134.07 1.06 6.22 16 17 C -0.11 -1.90 10.11 22.38 0.23 -1.68 16 18 C -0.06 -0.53 10.07 22.32 0.22 -0.30 16 19 C -0.12 -1.08 9.98 22.08 0.22 -0.86 16 20 C 0.04 0.68 10.78 83.23 0.90 1.57 16 21 N -0.39 -10.76 2.95 -342.89 -1.01 -11.77 16 22 C -0.11 -4.57 5.34 30.67 0.16 -4.40 16 23 C 0.18 8.78 5.31 86.36 0.46 9.23 16 24 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 25 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 27 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.10 2.93 7.53 -2.39 -0.02 2.91 16 30 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 31 H 0.19 -0.02 8.06 -2.91 -0.02 -0.04 16 32 H 0.20 -0.03 8.06 -2.91 -0.02 -0.05 16 33 H 0.19 2.20 7.63 -2.91 -0.02 2.18 16 34 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 3.10 6.04 -2.38 -0.01 3.08 16 Total: -1.00 -77.13 305.96 5.03 -72.10 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 1.07 Total: 2.34 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 6.09 Total: 3.46 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -4.15 Total: -125.63 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -77.13 5.03 -72.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070754711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.943 kcal (2) G-P(sol) polarization free energy of solvation -77.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds