Wall clock time and date at job start Mon Mar 30 2020 05:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 N 1.46898 * 109.47006 * 240.00045 * 2 1 3 5 5 C 1.47845 * 111.00053 * 300.84218 * 4 2 1 6 6 C 1.54906 * 104.79950 * 213.63929 * 5 4 2 7 7 C 1.55140 * 101.64922 * 37.07110 * 6 5 4 8 8 H 1.08994 * 110.86108 * 82.80219 * 7 6 5 9 9 N 1.46504 * 110.70295 * 205.96658 * 7 6 5 10 10 C 1.34774 * 120.00139 * 268.59853 * 9 7 6 11 11 O 1.21291 * 119.99767 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00605 * 180.02562 * 10 9 7 13 13 S 1.81000 * 109.47620 * 179.97438 * 12 10 9 14 14 C 1.76197 * 99.99850 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00563 * 0.02562 * 14 13 12 16 16 C 1.38801 * 119.99575 * 180.02562 * 14 13 12 17 17 N 1.31632 * 120.00192 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99895 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47435 * 59.99426 * 18 16 14 20 20 H 1.48498 * 109.47117 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47111 * 299.99627 * 18 16 14 22 22 C 1.47443 * 110.99932 * 180.02562 * 4 2 1 23 23 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 26 26 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09003 * 110.37407 * 332.47196 * 5 4 2 31 31 H 1.08997 * 110.37195 * 94.80519 * 5 4 2 32 32 H 1.09001 * 110.98952 * 278.98163 * 6 5 4 33 33 H 1.09000 * 111.02424 * 155.17660 * 6 5 4 34 34 H 0.97005 * 120.00218 * 88.60385 * 9 7 6 35 35 H 1.09003 * 109.46889 * 300.00232 * 12 10 9 36 36 H 1.09004 * 109.47125 * 59.99814 * 12 10 9 37 37 H 0.96999 * 119.99657 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.88855 * 242.66319 * 22 4 2 39 39 H 1.09003 * 109.89021 * 3.84784 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.5291 -2.0865 -1.2438 6 6 2.6734 -2.8875 -1.9135 7 6 3.9290 -2.1897 -1.3274 8 1 4.1672 -2.5848 -0.3400 9 7 5.0724 -2.3362 -2.2316 10 6 5.9138 -3.3795 -2.0905 11 8 5.7240 -4.1975 -1.2153 12 6 7.0903 -3.5300 -3.0201 13 16 8.0227 -5.0170 -2.5777 14 6 9.3015 -4.9475 -3.7878 15 1 9.3242 -4.1393 -4.5039 16 6 10.2798 -5.9315 -3.8209 17 7 10.2525 -6.9164 -2.9479 18 14 11.6360 -5.8576 -5.1033 19 1 12.4018 -4.5956 -4.9418 20 1 12.5483 -7.0158 -4.9263 21 1 11.0363 -5.9023 -6.4611 22 6 3.4936 -0.7127 -1.2332 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.3466 -2.4568 -0.2350 31 1 0.6205 -2.1501 -1.8424 32 1 2.6397 -2.7840 -2.9981 33 1 2.6384 -3.9373 -1.6223 34 1 5.2240 -1.6822 -2.9318 35 1 6.7336 -3.6163 -4.0465 36 1 7.7367 -2.6567 -2.9324 37 1 10.9364 -7.6038 -2.9708 38 1 3.8521 -0.1644 -2.1043 39 1 3.8916 -0.2663 -0.3219 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070914662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:48 Heat of formation + Delta-G solvation = -39.799161 kcal Electronic energy + Delta-G solvation = -18530.960632 eV Core-core repulsion = 15599.402039 eV Total energy + Delta-G solvation = -2931.558592 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05350 -38.60270 -35.23984 -32.98532 -32.42803 -29.83008 -29.58306 -27.89635 -26.71602 -25.46244 -22.46135 -21.31674 -20.36061 -20.15282 -17.86938 -16.75963 -16.63284 -15.86253 -15.32834 -14.86435 -14.80312 -14.56142 -13.96123 -13.75606 -13.41738 -13.26308 -12.89529 -12.62555 -12.56832 -12.40600 -12.25527 -11.90446 -11.50417 -11.48667 -11.25743 -11.11091 -11.04883 -11.03821 -10.94569 -10.76613 -9.82659 -9.41265 -9.06373 -8.88991 -8.58893 -8.24394 -6.50275 -6.21616 -3.92324 3.00467 3.06702 3.23627 3.27273 3.30373 3.58209 3.78439 4.20572 4.38806 4.51843 4.66137 4.81275 4.92709 5.03691 5.07748 5.11726 5.13449 5.23231 5.35152 5.37331 5.49852 5.52326 5.59729 5.62677 5.66062 5.75391 5.87734 5.89056 5.94080 5.97497 6.05955 6.14123 6.63420 6.69113 6.82350 7.59258 7.70392 8.35021 8.60256 9.23557 10.85779 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.055231 B = 0.003001 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.840510 B = 9327.876050 C = 9524.338749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.068 3.932 3 C -0.147 4.147 4 N -0.521 5.521 5 C 0.044 3.956 6 C -0.142 4.142 7 C 0.127 3.873 8 H 0.095 0.905 9 N -0.729 5.729 10 C 0.533 3.467 11 O -0.518 6.518 12 C -0.153 4.153 13 S -0.060 6.060 14 C -0.536 4.536 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.036 3.964 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.399 0.601 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.269 0.731 38 H 0.083 0.917 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.617 15.381 3.246 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.040 4.040 3 C -0.204 4.204 4 N -0.247 5.247 5 C -0.084 4.084 6 C -0.181 4.181 7 C 0.020 3.980 8 H 0.113 0.887 9 N -0.383 5.383 10 C 0.319 3.681 11 O -0.392 6.392 12 C -0.304 4.304 13 S 0.166 5.834 14 C -0.684 4.684 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.092 4.092 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.234 0.766 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.033 14.127 4.370 23.321 hybrid contribution 1.472 0.864 -1.469 2.252 sum -16.562 14.991 2.901 22.526 Atomic orbital electron populations 1.21851 0.94165 1.02076 1.02145 1.21839 0.95900 0.95295 0.90966 1.21906 1.01178 0.95175 1.02177 1.63716 1.07373 1.15304 1.38288 1.23002 0.98494 0.87047 0.99816 1.23142 0.93653 1.00013 1.01287 1.22087 0.85883 0.95058 0.94962 0.88706 1.45959 1.27917 1.28630 1.35767 1.20344 0.82747 0.80309 0.84650 1.90698 1.73322 1.41217 1.33967 1.23533 0.98209 1.07331 1.01329 1.85389 1.28494 1.24560 1.44922 1.22830 1.12993 1.13906 1.18700 0.90963 1.24996 0.97663 0.94513 0.96419 1.70009 1.34211 1.11780 1.34332 0.86219 0.80544 0.77813 0.80895 1.19939 1.20812 1.19925 1.23064 0.88155 0.95606 1.02418 0.91763 0.92583 0.92284 0.94007 0.92260 0.92479 0.91735 0.93281 0.89977 0.90219 0.90122 0.76622 0.89167 0.89194 0.92124 0.89925 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.08 37.16 0.34 -0.67 16 2 C 0.07 0.56 2.26 -67.71 -0.15 0.40 16 3 C -0.15 -1.06 9.06 37.16 0.34 -0.72 16 4 N -0.52 -4.86 5.03 -223.32 -1.12 -5.98 16 5 C 0.04 0.41 5.39 -2.30 -0.01 0.40 16 6 C -0.14 -1.59 6.76 -24.59 -0.17 -1.75 16 7 C 0.13 1.53 3.31 -66.13 -0.22 1.31 16 8 H 0.09 1.35 7.55 -51.93 -0.39 0.95 16 9 N -0.73 -9.74 5.18 -52.06 -0.27 -10.01 16 10 C 0.53 9.91 7.85 -10.99 -0.09 9.82 16 11 O -0.52 -11.72 15.51 5.55 0.09 -11.63 16 12 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 13 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 14 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 15 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 16 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 18 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 C 0.04 0.35 5.89 -2.86 -0.02 0.33 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.39 7.03 -51.93 -0.37 0.02 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.04 0.36 8.10 -51.93 -0.42 -0.06 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.42 6.50 -51.93 -0.34 0.08 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.45 7.58 -51.93 -0.39 0.06 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.40 4.20 8.37 -40.82 -0.34 3.86 16 35 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 36 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.08 0.74 7.71 -51.93 -0.40 0.34 16 39 H 0.06 0.60 6.35 -51.93 -0.33 0.27 16 LS Contribution 329.72 15.07 4.97 4.97 Total: -1.00 -33.27 329.72 -8.73 -42.00 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.33 Total: 0.35 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 0.44 Total: -6.74 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: -0.66 Total: -41.50 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.27 -8.73 -42.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070914662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.201 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds