Wall clock time and date at job start Mon Mar 30 2020 05:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 N 1.46898 * 109.47006 * 240.00045 * 2 1 3 5 5 C 1.47845 * 111.00053 * 300.84218 * 4 2 1 6 6 C 1.54906 * 104.79950 * 213.63929 * 5 4 2 7 7 C 1.55140 * 101.64922 * 37.07110 * 6 5 4 8 8 H 1.08994 * 110.86108 * 82.80219 * 7 6 5 9 9 N 1.46504 * 110.70295 * 205.96658 * 7 6 5 10 10 C 1.34774 * 120.00139 * 268.59853 * 9 7 6 11 11 O 1.21291 * 119.99767 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00605 * 180.02562 * 10 9 7 13 13 S 1.81000 * 109.47620 * 179.97438 * 12 10 9 14 14 C 1.76197 * 99.99850 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00563 * 0.02562 * 14 13 12 16 16 C 1.38801 * 119.99575 * 180.02562 * 14 13 12 17 17 N 1.31632 * 120.00192 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99895 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47435 * 59.99426 * 18 16 14 20 20 H 1.48498 * 109.47117 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47111 * 299.99627 * 18 16 14 22 22 C 1.47443 * 110.99932 * 180.02562 * 4 2 1 23 23 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 26 26 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09003 * 110.37407 * 332.47196 * 5 4 2 31 31 H 1.08997 * 110.37195 * 94.80519 * 5 4 2 32 32 H 1.09001 * 110.98952 * 278.98163 * 6 5 4 33 33 H 1.09000 * 111.02424 * 155.17660 * 6 5 4 34 34 H 0.97005 * 120.00218 * 88.60385 * 9 7 6 35 35 H 1.09003 * 109.46889 * 300.00232 * 12 10 9 36 36 H 1.09004 * 109.47125 * 59.99814 * 12 10 9 37 37 H 0.96999 * 119.99657 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.88855 * 242.66319 * 22 4 2 39 39 H 1.09003 * 109.89021 * 3.84784 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.5291 -2.0865 -1.2438 6 6 2.6734 -2.8875 -1.9135 7 6 3.9290 -2.1897 -1.3274 8 1 4.1672 -2.5848 -0.3400 9 7 5.0724 -2.3362 -2.2316 10 6 5.9138 -3.3795 -2.0905 11 8 5.7240 -4.1975 -1.2153 12 6 7.0903 -3.5300 -3.0201 13 16 8.0227 -5.0170 -2.5777 14 6 9.3015 -4.9475 -3.7878 15 1 9.3242 -4.1393 -4.5039 16 6 10.2798 -5.9315 -3.8209 17 7 10.2525 -6.9164 -2.9479 18 14 11.6360 -5.8576 -5.1033 19 1 12.4018 -4.5956 -4.9418 20 1 12.5483 -7.0158 -4.9263 21 1 11.0363 -5.9023 -6.4611 22 6 3.4936 -0.7127 -1.2332 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.3466 -2.4568 -0.2350 31 1 0.6205 -2.1501 -1.8424 32 1 2.6397 -2.7840 -2.9981 33 1 2.6384 -3.9373 -1.6223 34 1 5.2240 -1.6822 -2.9318 35 1 6.7336 -3.6163 -4.0465 36 1 7.7367 -2.6567 -2.9324 37 1 10.9364 -7.6038 -2.9708 38 1 3.8521 -0.1644 -2.1043 39 1 3.8916 -0.2663 -0.3219 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070914662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:48 Heat of formation + Delta-G solvation = -63.979501 kcal Electronic energy + Delta-G solvation = -18532.009170 eV Core-core repulsion = 15599.402039 eV Total energy + Delta-G solvation = -2932.607131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.13471 -39.79189 -36.25576 -34.58833 -34.04339 -31.19178 -30.36182 -28.89014 -27.70463 -27.37668 -23.23617 -22.41990 -21.63759 -20.86709 -19.84841 -18.03310 -17.72941 -16.93092 -16.87266 -16.40854 -16.30365 -15.71491 -15.22461 -14.84306 -14.54701 -14.47015 -14.22249 -13.72982 -13.65346 -13.22646 -13.17411 -12.95938 -12.87478 -12.81316 -12.63910 -12.47443 -12.20388 -11.97737 -11.83579 -11.74633 -11.71282 -11.13038 -10.97623 -10.28658 -10.12356 -9.33912 -8.67364 -8.34810 -6.13141 1.26137 1.44083 1.46415 1.56244 1.57864 2.21345 2.28003 2.92754 2.99268 3.31612 3.52234 3.67448 3.95627 3.96998 4.11888 4.15247 4.28372 4.30183 4.31237 4.43861 4.50663 4.57791 4.80288 4.84221 4.85637 4.96696 4.98420 4.99376 5.06315 5.08989 5.33327 5.39696 5.41445 5.49506 5.91937 6.11136 6.19456 6.48372 7.06348 7.22213 8.74211 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.055231 B = 0.003001 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.840510 B = 9327.876050 C = 9524.338749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.064 3.936 3 C -0.143 4.143 4 N -0.522 5.522 5 C 0.051 3.949 6 C -0.139 4.139 7 C 0.123 3.877 8 H 0.071 0.929 9 N -0.702 5.702 10 C 0.536 3.464 11 O -0.566 6.566 12 C -0.129 4.129 13 S -0.152 6.152 14 C -0.547 4.547 15 H 0.083 0.917 16 C 0.013 3.987 17 N -0.912 5.912 18 Si 0.999 3.001 19 H -0.262 1.262 20 H -0.279 1.279 21 H -0.262 1.262 22 C 0.045 3.955 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.418 0.582 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.271 0.729 38 H 0.097 0.903 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.127 17.698 1.826 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.045 4.045 3 C -0.201 4.201 4 N -0.248 5.248 5 C -0.077 4.077 6 C -0.178 4.178 7 C 0.017 3.983 8 H 0.089 0.911 9 N -0.356 5.356 10 C 0.322 3.678 11 O -0.444 6.444 12 C -0.280 4.280 13 S 0.075 5.925 14 C -0.695 4.695 15 H 0.102 0.898 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.821 3.179 19 H -0.186 1.186 20 H -0.204 1.204 21 H -0.186 1.186 22 C -0.083 4.083 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.255 0.745 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.578 16.504 2.931 25.023 hybrid contribution 1.508 0.225 -0.986 1.816 sum -17.070 16.730 1.945 23.980 Atomic orbital electron populations 1.21826 0.93177 1.02173 1.02710 1.21949 0.96746 0.95657 0.90109 1.21882 1.00977 0.94487 1.02748 1.63810 1.06890 1.15056 1.39013 1.22966 0.98090 0.86819 0.99826 1.23083 0.93943 0.99209 1.01605 1.22191 0.85452 0.97186 0.93507 0.91110 1.45683 1.26948 1.27112 1.35857 1.20098 0.82949 0.80959 0.83805 1.90691 1.74484 1.43333 1.35881 1.23370 0.98189 1.03922 1.02547 1.85580 1.30515 1.30001 1.46407 1.23178 1.13158 1.14400 1.18731 0.89842 1.26145 1.00463 0.93864 0.98744 1.70180 1.35387 1.12770 1.36503 0.84996 0.76852 0.78237 0.77863 1.18623 1.20429 1.18623 1.23021 0.88555 0.93438 1.03306 0.91803 0.92734 0.91122 0.94701 0.91121 0.92746 0.91757 0.93283 0.88733 0.89736 0.91948 0.74458 0.87126 0.87075 0.91987 0.88531 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.08 71.98 0.65 -1.02 16 2 C 0.06 0.91 2.26 44.92 0.10 1.01 16 3 C -0.14 -1.74 9.06 71.98 0.65 -1.09 16 4 N -0.52 -8.66 5.03 -860.46 -4.33 -12.98 16 5 C 0.05 0.87 5.39 86.77 0.47 1.34 16 6 C -0.14 -3.00 6.76 31.98 0.22 -2.79 16 7 C 0.12 2.86 3.31 46.16 0.15 3.01 16 8 H 0.07 2.04 7.55 -2.39 -0.02 2.02 16 9 N -0.70 -17.70 5.18 -437.02 -2.26 -19.96 16 10 C 0.54 19.72 7.85 87.66 0.69 20.41 16 11 O -0.57 -26.31 15.51 -3.07 -0.05 -26.36 16 12 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 13 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 14 C -0.55 -31.24 9.50 67.95 0.65 -30.60 16 15 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 16 C 0.01 0.72 5.49 84.86 0.47 1.18 16 17 N -0.91 -56.25 13.22 21.65 0.29 -55.96 16 18 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 19 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 20 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 C 0.05 0.78 5.89 86.63 0.51 1.29 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 0.66 7.03 -2.39 -0.02 0.64 16 25 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 26 H 0.03 0.56 8.10 -2.39 -0.02 0.54 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.69 6.50 -2.39 -0.02 0.67 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.85 7.58 -2.39 -0.02 0.83 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.42 7.59 8.37 -92.70 -0.78 6.82 16 35 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 36 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 37 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 38 H 0.10 1.43 7.71 -2.39 -0.02 1.41 16 39 H 0.07 1.15 6.35 -2.39 -0.02 1.14 16 Total: -1.00 -73.77 329.72 -0.24 -74.01 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.26 Total: 17.20 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 4.99 Total: -11.89 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -6.30 Total: -88.91 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.05 Total: -26.36 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -73.77 -0.24 -74.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070914662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.034 kcal (2) G-P(sol) polarization free energy of solvation -73.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds