Wall clock time and date at job start Mon Mar 30 2020 05:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47447 * 2 1 4 4 C 1.50697 * 109.47113 * 120.00369 * 2 1 3 5 5 H 1.08003 * 120.00099 * 119.99963 * 4 2 1 6 6 C 1.37876 * 119.99855 * 299.99474 * 4 2 1 7 7 N 1.31509 * 120.00178 * 0.02562 * 6 4 2 8 8 Si 1.86812 * 119.99940 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47138 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46893 * 120.00121 * 8 6 4 11 11 H 1.48497 * 109.46980 * 240.00407 * 8 6 4 12 12 N 1.46904 * 109.46901 * 240.00242 * 2 1 3 13 13 C 1.46900 * 110.99829 * 306.04631 * 12 2 1 14 14 C 1.37930 * 111.00189 * 69.99733 * 12 2 1 15 15 N 1.32596 * 120.90734 * 257.04052 * 14 12 2 16 16 C 1.32380 * 121.47316 * 179.97438 * 15 14 12 17 17 N 1.31148 * 122.97795 * 0.27880 * 16 15 14 18 18 C 1.34182 * 120.49313 * 359.44566 * 17 16 15 19 19 C 1.40186 * 121.83687 * 180.19990 * 18 17 16 20 20 C 1.36162 * 119.83076 * 180.27243 * 19 18 17 21 21 C 1.39850 * 120.96513 * 0.04336 * 20 19 18 22 22 N 1.39752 * 119.70854 * 179.97438 * 21 20 19 23 23 C 1.38002 * 120.58224 * 359.97438 * 21 20 19 24 24 C 1.39884 * 119.34610 * 359.97438 * 23 21 20 25 25 H 1.09004 * 109.46955 * 299.99808 * 1 2 3 26 26 H 1.08999 * 109.46883 * 59.99860 * 1 2 3 27 27 H 1.08999 * 109.47447 * 179.97438 * 1 2 3 28 28 H 0.97007 * 120.00323 * 179.97438 * 7 6 4 29 29 H 1.09007 * 109.47547 * 191.26128 * 13 12 2 30 30 H 1.09005 * 109.47629 * 311.26192 * 13 12 2 31 31 H 1.09000 * 109.47215 * 71.25750 * 13 12 2 32 32 H 1.07995 * 118.50600 * 180.02562 * 16 15 14 33 33 H 1.08003 * 120.08450 * 0.27249 * 19 18 17 34 34 H 1.08001 * 119.51377 * 180.02562 * 20 19 18 35 35 H 0.96996 * 119.99877 * 180.02562 * 22 21 20 36 36 H 0.96998 * 119.99992 * 0.02650 * 22 21 20 37 37 H 1.08004 * 120.32025 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.1484 -2.2859 3.6037 10 1 3.1474 -0.1859 4.8160 11 1 1.1679 -1.5868 4.8164 12 7 2.0196 -0.6925 -1.1995 13 6 1.4342 -2.0354 -1.3079 14 6 1.7691 0.0490 -2.3352 15 7 0.7720 -0.2684 -3.1497 16 6 0.5213 0.4357 -4.2423 17 7 1.2317 1.4792 -4.5979 18 6 2.2612 1.8914 -3.8425 19 6 3.0367 3.0052 -4.1936 20 6 4.0759 3.3845 -3.3997 21 6 4.3857 2.6776 -2.2335 22 7 5.4585 3.0896 -1.4382 23 6 3.6415 1.5767 -1.8611 24 6 2.5690 1.1713 -2.6624 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7083 1.1608 3.4845 29 1 1.9564 -2.5981 -2.0818 30 1 1.5326 -2.5529 -0.3536 31 1 0.3792 -1.9519 -1.5687 32 1 -0.3033 0.1347 -4.8714 33 1 2.8104 3.5611 -5.0915 34 1 4.6696 4.2436 -3.6748 35 1 5.6774 2.6021 -0.6287 36 1 5.9842 3.8630 -1.6958 37 1 3.8848 1.0336 -0.9598 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081592903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:54 Heat of formation + Delta-G solvation = 63.770984 kcal Electronic energy + Delta-G solvation = -21072.060353 eV Core-core repulsion = 18041.841699 eV Total energy + Delta-G solvation = -3030.218654 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.29723 -39.51179 -38.67213 -35.39319 -34.85154 -33.34734 -32.16991 -30.78652 -29.26619 -27.39288 -27.35759 -25.08920 -24.45386 -23.16041 -21.64292 -19.35001 -19.04675 -18.39987 -18.13908 -17.30056 -16.84969 -16.11008 -16.02749 -15.66782 -15.19141 -15.09975 -14.94109 -14.50700 -14.14991 -13.92948 -13.74302 -13.39051 -13.14478 -12.87225 -12.75537 -12.54371 -12.41014 -12.22368 -12.12380 -11.90375 -11.71702 -11.27004 -10.95044 -10.55358 -10.12203 -9.89189 -9.45479 -8.17271 -8.12126 -6.28141 -0.59576 -0.02877 1.00494 1.43447 1.46299 1.57755 2.14654 2.40358 2.79107 2.98018 3.14826 3.23083 3.37538 3.45655 3.80830 3.91751 4.15579 4.40347 4.45227 4.61404 4.64472 4.75543 4.80361 4.92053 4.98670 5.04711 5.07087 5.14121 5.26202 5.34627 5.52037 5.53394 5.68630 5.74421 5.91655 6.12317 6.33723 6.52797 6.56736 6.80938 7.03167 7.32694 7.41022 8.91325 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.006845 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.981197 B = 4089.859970 C = 5104.944466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.235 3.765 3 H 0.018 0.982 4 C -0.518 4.518 5 H 0.065 0.935 6 C 0.018 3.982 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.282 1.282 12 N -0.479 5.479 13 C 0.043 3.957 14 C 0.376 3.624 15 N -0.581 5.581 16 C 0.281 3.719 17 N -0.530 5.530 18 C 0.097 3.903 19 C -0.071 4.071 20 C -0.119 4.119 21 C 0.208 3.792 22 N -0.860 5.860 23 C -0.178 4.178 24 C -0.125 4.125 25 H 0.068 0.932 26 H 0.007 0.993 27 H 0.040 0.960 28 H 0.264 0.736 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.216 0.784 33 H 0.163 0.837 34 H 0.175 0.825 35 H 0.405 0.595 36 H 0.413 0.587 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.108 4.584 -9.859 12.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.131 3.869 3 H 0.036 0.964 4 C -0.556 4.556 5 H 0.084 0.916 6 C -0.181 4.181 7 N -0.557 5.557 8 Si 0.790 3.210 9 H -0.189 1.189 10 H -0.206 1.206 11 H -0.208 1.208 12 N -0.198 5.198 13 C -0.104 4.104 14 C 0.124 3.876 15 N -0.302 5.302 16 C -0.010 4.010 17 N -0.246 5.246 18 C -0.031 4.031 19 C -0.091 4.091 20 C -0.143 4.143 21 C 0.101 3.899 22 N -0.399 5.399 23 C -0.205 4.205 24 C -0.132 4.132 25 H 0.087 0.913 26 H 0.026 0.974 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.232 0.768 33 H 0.181 0.819 34 H 0.192 0.808 35 H 0.233 0.767 36 H 0.244 0.756 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.815 4.469 -10.344 13.169 hybrid contribution 0.030 -0.217 1.702 1.716 sum 6.845 4.252 -8.641 11.816 Atomic orbital electron populations 1.22187 0.99530 0.99779 0.99454 1.19177 0.90174 0.93171 0.84386 0.96372 1.21261 1.31473 1.12933 0.89948 0.91641 1.25666 0.95048 0.95609 1.01783 1.70024 1.37337 1.24037 1.24299 0.85406 0.78049 0.78655 0.78915 1.18931 1.20579 1.20836 1.59412 1.55370 1.04187 1.00796 1.22155 0.98429 0.87892 1.01930 1.20701 0.86653 0.88671 0.91540 1.68435 1.17568 1.35618 1.08595 1.25006 0.97632 0.87473 0.90915 1.68659 1.07415 1.16064 1.32455 1.19163 0.95363 0.97272 0.91265 1.20756 0.93531 0.94017 1.00773 1.20953 0.98850 1.01376 0.93101 1.17896 0.88604 0.91998 0.91365 1.42450 1.32986 1.36269 1.28243 1.20475 0.98074 1.00124 1.01859 1.19012 0.98524 0.97620 0.98062 0.91284 0.97371 0.94118 0.92725 0.91877 0.90720 0.93723 0.76810 0.81927 0.80799 0.76652 0.75595 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.62 8.26 71.98 0.59 -7.03 16 2 C 0.24 11.90 1.84 44.17 0.08 11.98 16 3 H 0.02 1.03 6.71 -2.39 -0.02 1.02 16 4 C -0.52 -27.30 7.80 25.60 0.20 -27.10 16 5 H 0.07 3.42 7.19 -2.91 -0.02 3.39 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.92 -51.09 11.32 21.45 0.24 -50.85 16 8 Si 0.96 41.83 29.54 68.60 2.03 43.86 16 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 N -0.48 -21.62 4.10 -705.09 -2.89 -24.51 16 13 C 0.04 1.77 8.09 127.69 1.03 2.80 16 14 C 0.38 16.26 5.08 133.99 0.68 16.94 16 15 N -0.58 -23.52 8.54 -196.71 -1.68 -25.20 16 16 C 0.28 9.87 12.22 180.90 2.21 12.08 16 17 N -0.53 -18.87 10.44 -193.88 -2.02 -20.89 16 18 C 0.10 3.46 6.61 40.09 0.27 3.72 16 19 C -0.07 -1.91 9.99 22.26 0.22 -1.68 16 20 C -0.12 -2.68 9.78 22.18 0.22 -2.46 16 21 C 0.21 5.72 6.74 38.21 0.26 5.98 16 22 N -0.86 -17.16 9.09 -51.29 -0.47 -17.62 16 23 C -0.18 -6.55 8.53 22.61 0.19 -6.36 16 24 C -0.13 -5.02 5.60 -21.20 -0.12 -5.14 16 25 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 26 H 0.01 0.37 7.30 -2.39 -0.02 0.35 16 27 H 0.04 1.98 6.58 -2.39 -0.02 1.96 16 28 H 0.26 13.93 8.31 -92.70 -0.77 13.16 16 29 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.07 3.11 6.63 -2.38 -0.02 3.10 16 31 H 0.04 1.85 6.13 -2.39 -0.01 1.84 16 32 H 0.22 5.71 8.06 -2.91 -0.02 5.69 16 33 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.40 8.23 8.83 -92.71 -0.82 7.41 16 36 H 0.41 5.25 8.84 -92.71 -0.82 4.43 16 37 H 0.12 4.95 7.04 -2.91 -0.02 4.93 16 Total: -1.00 -65.11 302.15 0.98 -64.13 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -0.51 Total: 25.93 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 6.28 Total: 5.16 kcal Atomic # 7 Polarization: -132.25 SS G_CDS: -6.82 Total: -139.07 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -65.11 0.98 -64.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081592903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.901 kcal (2) G-P(sol) polarization free energy of solvation -65.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds