Wall clock time and date at job start Mon Mar 30 2020 05:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47133 * 2 1 4 4 H 1.08997 * 109.47496 * 304.99764 * 3 2 1 5 5 C 1.50713 * 109.47020 * 185.00073 * 3 2 1 6 6 H 1.07995 * 119.99743 * 239.99655 * 5 3 2 7 7 C 1.37876 * 120.00019 * 60.00069 * 5 3 2 8 8 N 1.31514 * 119.99737 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00066 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47320 * 89.99730 * 9 7 5 11 11 H 1.48496 * 109.47081 * 210.00261 * 9 7 5 12 12 H 1.48507 * 109.47212 * 330.00034 * 9 7 5 13 13 N 1.46497 * 109.47097 * 65.00377 * 3 2 1 14 14 C 1.34776 * 119.99456 * 274.99937 * 13 3 2 15 15 O 1.21274 * 120.00342 * 359.97438 * 14 13 3 16 16 C 1.50711 * 119.99791 * 180.02562 * 14 13 3 17 17 C 1.52996 * 109.47060 * 179.97438 * 16 14 13 18 18 H 1.09001 * 109.40877 * 305.15936 * 17 16 14 19 19 C 1.53249 * 109.40543 * 185.39639 * 17 16 14 20 20 S 1.81900 * 108.50530 * 177.88295 * 19 17 16 21 21 C 1.81896 * 101.91729 * 51.30420 * 20 19 17 22 22 C 1.53257 * 108.50319 * 308.69742 * 21 20 19 23 23 N 1.46466 * 109.85942 * 62.00524 * 22 21 20 24 24 H 1.09002 * 109.46675 * 300.00028 * 1 2 3 25 25 H 1.08997 * 109.47038 * 59.99729 * 1 2 3 26 26 H 1.08998 * 109.47260 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47414 * 239.99909 * 2 1 3 28 28 H 1.09004 * 109.47661 * 120.00121 * 2 1 3 29 29 H 0.97001 * 119.99863 * 180.02562 * 8 7 5 30 30 H 0.96998 * 120.00223 * 94.99817 * 13 3 2 31 31 H 1.09003 * 109.47001 * 59.99994 * 16 14 13 32 32 H 1.08996 * 109.46796 * 300.00192 * 16 14 13 33 33 H 1.09006 * 109.62844 * 297.58564 * 19 17 16 34 34 H 1.09001 * 109.62928 * 58.17211 * 19 17 16 35 35 H 1.09000 * 109.62808 * 68.39546 * 21 20 19 36 36 H 1.08992 * 109.63546 * 188.79443 * 21 20 19 37 37 H 1.08996 * 109.40571 * 301.88141 * 22 21 20 38 38 H 1.09003 * 109.40447 * 182.12076 * 22 21 20 39 39 H 1.00902 * 110.99577 * 162.23778 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1239 6 1 4.1473 1.8889 0.6522 7 6 4.1434 0.8784 -1.2280 8 7 3.4062 0.3375 -2.1733 9 14 6.0049 0.8812 -1.3819 10 1 6.5549 -0.3502 -0.7602 11 1 6.3829 0.9224 -2.8173 12 1 6.5570 2.0738 -0.6902 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6643 1.3669 15 8 -0.3392 2.6327 0.4341 16 6 0.0367 3.3386 2.6545 17 6 -1.3821 3.8953 2.5208 18 1 -1.4340 4.5492 1.6503 19 6 -1.7356 4.6959 3.7788 20 16 -3.4002 5.3981 3.5675 21 6 -4.3672 3.9342 3.0873 22 6 -3.6513 3.2385 1.9244 23 7 -2.3258 2.7875 2.3545 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8293 -0.0609 -2.9500 30 1 2.2720 2.1231 1.9978 31 1 0.7281 4.1542 2.8667 32 1 0.0681 2.6146 3.4686 33 1 -1.7234 4.0374 4.6474 34 1 -1.0132 5.5007 3.9157 35 1 -4.4413 3.2508 3.9331 36 1 -5.3656 4.2409 2.7756 37 1 -3.5447 3.9372 1.0947 38 1 -4.2384 2.3794 1.5997 39 1 -1.9584 2.0913 1.7234 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085614230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:02 Heat of formation + Delta-G solvation = -51.233795 kcal Electronic energy + Delta-G solvation = -19607.965635 eV Core-core repulsion = 16675.911200 eV Total energy + Delta-G solvation = -2932.054435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.52708 -37.23684 -35.04493 -32.87383 -32.36102 -30.98703 -28.84666 -28.19528 -26.61306 -23.22103 -22.64706 -21.05385 -20.04493 -19.37686 -17.35954 -16.71803 -16.17657 -15.80867 -15.39590 -15.23860 -14.51399 -14.34018 -14.00579 -13.51610 -13.36537 -12.80516 -12.75511 -12.58888 -12.40303 -12.18905 -11.80744 -11.50045 -11.29245 -11.21696 -11.03711 -10.85438 -10.80131 -10.36271 -10.21964 -9.86304 -9.68264 -9.10601 -9.02795 -8.56382 -8.50565 -7.88591 -7.75784 -6.16482 -4.26129 1.71141 2.41757 3.21195 3.28365 3.29825 3.31980 4.00005 4.11139 4.33709 4.78669 4.81561 5.01327 5.07893 5.15114 5.19759 5.23043 5.38294 5.54827 5.59126 5.70044 5.74676 5.81905 6.08248 6.33911 6.39108 6.59699 6.97475 7.02253 7.13517 7.29192 7.37182 7.47670 7.57128 7.68201 7.85419 8.13842 8.60519 8.72516 9.06182 9.41467 10.88754 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.039994 B = 0.004013 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.939486 B = 6974.836836 C = 7422.589031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.501 3.499 15 O -0.556 6.556 16 C -0.143 4.143 17 C 0.107 3.893 18 H 0.062 0.938 19 C -0.069 4.069 20 S -0.282 6.282 21 C -0.074 4.074 22 C 0.061 3.939 23 N -0.696 5.696 24 H 0.038 0.962 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.099 0.901 28 H 0.031 0.969 29 H 0.264 0.736 30 H 0.389 0.611 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.758 5.035 10.977 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.352 5.352 14 C 0.286 3.714 15 O -0.436 6.436 16 C -0.185 4.185 17 C -0.005 4.005 18 H 0.080 0.920 19 C -0.218 4.218 20 S -0.055 6.055 21 C -0.223 4.223 22 C -0.071 4.071 23 N -0.334 5.334 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.117 0.883 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.065 0.935 38 H 0.100 0.900 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.798 5.971 10.880 16.451 hybrid contribution 1.916 -1.074 -0.738 2.317 sum -8.882 4.897 10.142 14.344 Atomic orbital electron populations 1.21833 0.98402 0.98057 1.01035 1.21929 0.92593 0.99811 1.02291 1.18789 0.94205 0.89183 0.81028 0.93348 1.21237 0.90755 1.39108 1.06311 0.92119 1.24883 0.98619 0.94783 0.95360 1.69891 1.35143 1.37544 1.09346 0.86461 0.84863 0.78460 0.77410 1.20526 1.21061 1.19863 1.46518 1.14634 1.55524 1.18541 1.20339 0.82843 0.79283 0.88891 1.90630 1.51504 1.60653 1.40795 1.21869 0.96602 1.01926 0.98144 1.21293 0.90665 0.92478 0.96084 0.91991 1.23587 0.94857 1.02147 1.01183 1.86813 1.08405 1.19005 1.91226 1.23538 1.00090 0.96763 1.01860 1.21953 0.90720 0.99580 0.94814 1.59799 1.02610 1.14589 1.56381 0.94310 0.93232 0.95848 0.88332 0.95046 0.92550 0.77893 0.88596 0.88499 0.89104 0.87694 0.89285 0.87934 0.93454 0.90013 0.80837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.52 37.16 0.32 -2.56 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.51 2.24 -69.08 -0.15 6.35 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.97 16 5 C -0.54 -13.77 8.73 -34.43 -0.30 -14.07 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.27 11.29 55.43 0.63 -23.64 16 9 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.71 -13.57 5.02 -54.93 -0.28 -13.85 16 14 C 0.50 8.90 5.96 -10.98 -0.07 8.83 16 15 O -0.56 -11.56 11.49 5.56 0.06 -11.50 16 16 C -0.14 -1.83 5.35 -27.88 -0.15 -1.98 16 17 C 0.11 1.39 1.96 -67.82 -0.13 1.26 16 18 H 0.06 0.95 7.72 -51.93 -0.40 0.55 16 19 C -0.07 -0.76 5.97 37.29 0.22 -0.54 16 20 S -0.28 -3.38 22.40 -107.50 -2.41 -5.79 16 21 C -0.07 -0.77 6.69 37.29 0.25 -0.52 16 22 C 0.06 0.72 6.39 -3.93 -0.03 0.70 16 23 N -0.70 -9.38 6.29 -107.06 -0.67 -10.05 16 24 H 0.04 0.77 5.62 -51.93 -0.29 0.48 16 25 H 0.05 1.12 7.85 -51.93 -0.41 0.71 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 6.51 8.54 -40.82 -0.35 6.16 16 31 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.63 7.91 -51.93 -0.41 0.22 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.37 5.73 6.42 -39.29 -0.25 5.47 16 LS Contribution 316.81 15.07 4.77 4.77 Total: -1.00 -28.31 316.81 -9.35 -37.67 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -6.16 Total: 11.16 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.28 Total: -4.00 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.32 Total: -47.54 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.06 Total: -11.50 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -2.41 Total: -5.79 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.31 -9.35 -37.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085614230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.567 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds