Wall clock time and date at job start Mon Mar 30 2020 05:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47133 * 2 1 4 4 H 1.08997 * 109.47496 * 304.99764 * 3 2 1 5 5 C 1.50713 * 109.47020 * 185.00073 * 3 2 1 6 6 H 1.07995 * 119.99743 * 239.99655 * 5 3 2 7 7 C 1.37876 * 120.00019 * 60.00069 * 5 3 2 8 8 N 1.31514 * 119.99737 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00066 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47320 * 89.99730 * 9 7 5 11 11 H 1.48496 * 109.47081 * 210.00261 * 9 7 5 12 12 H 1.48507 * 109.47212 * 330.00034 * 9 7 5 13 13 N 1.46497 * 109.47097 * 65.00377 * 3 2 1 14 14 C 1.34776 * 119.99456 * 274.99937 * 13 3 2 15 15 O 1.21274 * 120.00342 * 359.97438 * 14 13 3 16 16 C 1.50711 * 119.99791 * 180.02562 * 14 13 3 17 17 C 1.52996 * 109.47060 * 179.97438 * 16 14 13 18 18 H 1.09001 * 109.40877 * 305.15936 * 17 16 14 19 19 C 1.53249 * 109.40543 * 185.39639 * 17 16 14 20 20 S 1.81900 * 108.50530 * 177.88295 * 19 17 16 21 21 C 1.81896 * 101.91729 * 51.30420 * 20 19 17 22 22 C 1.53257 * 108.50319 * 308.69742 * 21 20 19 23 23 N 1.46466 * 109.85942 * 62.00524 * 22 21 20 24 24 H 1.09002 * 109.46675 * 300.00028 * 1 2 3 25 25 H 1.08997 * 109.47038 * 59.99729 * 1 2 3 26 26 H 1.08998 * 109.47260 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47414 * 239.99909 * 2 1 3 28 28 H 1.09004 * 109.47661 * 120.00121 * 2 1 3 29 29 H 0.97001 * 119.99863 * 180.02562 * 8 7 5 30 30 H 0.96998 * 120.00223 * 94.99817 * 13 3 2 31 31 H 1.09003 * 109.47001 * 59.99994 * 16 14 13 32 32 H 1.08996 * 109.46796 * 300.00192 * 16 14 13 33 33 H 1.09006 * 109.62844 * 297.58564 * 19 17 16 34 34 H 1.09001 * 109.62928 * 58.17211 * 19 17 16 35 35 H 1.09000 * 109.62808 * 68.39546 * 21 20 19 36 36 H 1.08992 * 109.63546 * 188.79443 * 21 20 19 37 37 H 1.08996 * 109.40571 * 301.88141 * 22 21 20 38 38 H 1.09003 * 109.40447 * 182.12076 * 22 21 20 39 39 H 1.00902 * 110.99577 * 162.23778 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1239 6 1 4.1473 1.8889 0.6522 7 6 4.1434 0.8784 -1.2280 8 7 3.4062 0.3375 -2.1733 9 14 6.0049 0.8812 -1.3819 10 1 6.5549 -0.3502 -0.7602 11 1 6.3829 0.9224 -2.8173 12 1 6.5570 2.0738 -0.6902 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6643 1.3669 15 8 -0.3392 2.6327 0.4341 16 6 0.0367 3.3386 2.6545 17 6 -1.3821 3.8953 2.5208 18 1 -1.4340 4.5492 1.6503 19 6 -1.7356 4.6959 3.7788 20 16 -3.4002 5.3981 3.5675 21 6 -4.3672 3.9342 3.0873 22 6 -3.6513 3.2385 1.9244 23 7 -2.3258 2.7875 2.3545 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8293 -0.0609 -2.9500 30 1 2.2720 2.1231 1.9978 31 1 0.7281 4.1542 2.8667 32 1 0.0681 2.6146 3.4686 33 1 -1.7234 4.0374 4.6474 34 1 -1.0132 5.5007 3.9157 35 1 -4.4413 3.2508 3.9331 36 1 -5.3656 4.2409 2.7756 37 1 -3.5447 3.9372 1.0947 38 1 -4.2384 2.3794 1.5997 39 1 -1.9584 2.0913 1.7234 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085614230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:01 Heat of formation + Delta-G solvation = -70.610923 kcal Electronic energy + Delta-G solvation = -19608.805891 eV Core-core repulsion = 16675.911200 eV Total energy + Delta-G solvation = -2932.894691 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95202 -38.42496 -36.76262 -34.31527 -33.83868 -32.68900 -29.77681 -29.59423 -28.23474 -25.01215 -23.72079 -22.40025 -21.46229 -20.98263 -18.95335 -17.79297 -17.62372 -17.11701 -16.85947 -16.62823 -16.02080 -15.83582 -15.04931 -14.86587 -14.59646 -14.32973 -14.02513 -13.78123 -13.60341 -13.45195 -13.18750 -13.14648 -12.89446 -12.77335 -12.63691 -12.30642 -12.16200 -12.03388 -11.74590 -11.56500 -11.03785 -10.85397 -10.57170 -10.42585 -9.65666 -9.52044 -8.69637 -8.15904 -6.32912 0.83633 1.44406 1.45207 1.53547 1.55268 1.89980 2.37109 2.70408 3.08714 3.13863 3.70376 3.86760 4.01703 4.18185 4.20963 4.35185 4.39165 4.48906 4.51961 4.60553 4.69831 4.71327 4.76917 4.80554 4.89129 5.08137 5.09328 5.29066 5.45969 5.58251 5.64872 5.82253 5.94444 6.01058 6.17946 6.28536 6.76418 7.03339 7.35012 7.63217 8.89046 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.039994 B = 0.004013 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.939486 B = 6974.836836 C = 7422.589031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.003 1.003 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.705 5.705 14 C 0.497 3.503 15 O -0.589 6.589 16 C -0.128 4.128 17 C 0.108 3.892 18 H 0.033 0.967 19 C -0.057 4.057 20 S -0.313 6.313 21 C -0.062 4.062 22 C 0.058 3.942 23 N -0.696 5.696 24 H 0.050 0.950 25 H 0.024 0.976 26 H 0.042 0.958 27 H 0.067 0.933 28 H 0.039 0.961 29 H 0.264 0.736 30 H 0.404 0.596 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.028 0.972 38 H 0.093 0.907 39 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.375 5.289 13.338 17.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.015 0.985 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.353 5.353 14 C 0.285 3.715 15 O -0.471 6.471 16 C -0.170 4.170 17 C -0.004 4.004 18 H 0.051 0.949 19 C -0.206 4.206 20 S -0.086 6.086 21 C -0.210 4.210 22 C -0.073 4.073 23 N -0.331 5.331 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.239 0.761 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.122 0.878 34 H 0.140 0.860 35 H 0.116 0.884 36 H 0.138 0.862 37 H 0.046 0.954 38 H 0.112 0.888 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.424 6.251 13.292 18.012 hybrid contribution 1.729 -1.129 -1.505 2.555 sum -8.696 5.122 11.787 15.518 Atomic orbital electron populations 1.21660 0.96725 0.99057 1.00372 1.21772 0.94000 0.99165 1.01078 1.18316 0.93378 0.89168 0.81627 0.98536 1.21620 0.91728 1.38744 1.06570 0.91080 1.25743 1.03103 0.94491 0.95108 1.70049 1.36959 1.38453 1.09878 0.85417 0.79433 0.78856 0.77066 1.19741 1.21449 1.18897 1.46274 1.15795 1.55835 1.17406 1.21203 0.81663 0.78392 0.90242 1.90628 1.52322 1.61535 1.42619 1.21846 0.96815 1.02872 0.95446 1.21279 0.90901 0.92059 0.96131 0.94933 1.23556 0.94391 1.02486 1.00166 1.86954 1.09724 1.20615 1.91296 1.23531 1.00316 0.95859 1.01337 1.22014 0.90530 0.99739 0.94980 1.59908 1.03130 1.14425 1.55655 0.93086 0.95712 0.93897 0.91421 0.94172 0.92716 0.76131 0.85748 0.85982 0.87783 0.85960 0.88431 0.86230 0.95405 0.88846 0.82431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.14 8.52 71.98 0.61 -4.53 16 2 C -0.12 -5.76 5.45 30.59 0.17 -5.59 16 3 C 0.28 13.70 2.24 44.25 0.10 13.80 16 4 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 5 C -0.55 -28.23 8.73 25.60 0.22 -28.00 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 0.83 5.29 84.65 0.45 1.27 16 8 N -0.91 -51.70 11.29 21.45 0.24 -51.46 16 9 Si 0.97 41.43 29.54 68.60 2.03 43.45 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 13 N -0.70 -26.60 5.02 -446.08 -2.24 -28.84 16 14 C 0.50 17.25 5.96 87.66 0.52 17.77 16 15 O -0.59 -24.94 11.49 -3.01 -0.03 -24.97 16 16 C -0.13 -2.94 5.35 29.85 0.16 -2.78 16 17 C 0.11 2.65 1.96 45.08 0.09 2.74 16 18 H 0.03 1.00 7.72 -2.39 -0.02 0.98 16 19 C -0.06 -1.11 5.97 72.07 0.43 -0.68 16 20 S -0.31 -6.99 22.40 -56.49 -1.27 -8.25 16 21 C -0.06 -1.19 6.69 72.07 0.48 -0.70 16 22 C 0.06 1.35 6.39 86.47 0.55 1.90 16 23 N -0.70 -17.85 6.29 -492.64 -3.10 -20.95 16 24 H 0.05 2.02 5.62 -2.39 -0.01 2.00 16 25 H 0.02 1.14 7.85 -2.39 -0.02 1.12 16 26 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 3.66 5.95 -2.39 -0.01 3.65 16 28 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 30 H 0.40 12.74 8.54 -92.71 -0.79 11.95 16 31 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.03 0.75 7.91 -2.39 -0.02 0.73 16 38 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.35 10.80 6.42 -89.69 -0.58 10.23 16 Total: -1.00 -63.10 316.81 -0.90 -64.00 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -0.32 Total: 31.84 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 3.79 Total: -4.81 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -5.10 Total: -101.25 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.03 Total: -24.97 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: -6.99 SS G_CDS: -1.27 Total: -8.25 kcal Total: -63.10 -0.90 -64.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085614230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.611 kcal (2) G-P(sol) polarization free energy of solvation -63.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds