Wall clock time and date at job start Mon Mar 30 2020 04:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47298 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00283 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99762 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00337 * 179.97438 * 13 12 11 16 16 C 1.53000 * 109.47352 * 179.97438 * 15 13 12 17 17 H 1.09005 * 109.40537 * 304.99594 * 16 15 13 18 18 C 1.53247 * 109.40567 * 185.15944 * 16 15 13 19 19 S 1.81905 * 108.50344 * 177.87501 * 18 16 15 20 20 C 1.81894 * 101.91242 * 51.30495 * 19 18 16 21 21 C 1.53246 * 108.50826 * 308.69373 * 20 19 18 22 22 N 1.46465 * 109.40873 * 64.83751 * 16 15 13 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 27 27 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 28 28 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 29 29 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 30 30 H 0.96997 * 119.99674 * 359.97438 * 12 11 10 31 31 H 1.09002 * 109.46875 * 299.99342 * 15 13 12 32 32 H 1.08998 * 109.46890 * 59.99540 * 15 13 12 33 33 H 1.09000 * 109.62897 * 297.58039 * 18 16 15 34 34 H 1.09002 * 109.63495 * 58.17218 * 18 16 15 35 35 H 1.09000 * 109.63774 * 68.39835 * 20 19 18 36 36 H 1.09000 * 109.63296 * 188.79125 * 20 19 18 37 37 H 1.08993 * 109.41114 * 182.12570 * 21 20 19 38 38 H 1.09006 * 109.40429 * 301.88703 * 21 20 19 39 39 H 1.00909 * 111.00117 * 317.88871 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0006 13 6 1.9830 -7.3713 -0.0015 14 8 0.7906 -7.5929 -0.0024 15 6 2.9622 -8.5168 -0.0014 16 6 2.1972 -9.8418 -0.0020 17 1 1.5052 -9.8608 0.8401 18 6 3.1893 -11.0026 0.1281 19 16 2.2511 -12.5598 0.1886 20 6 1.1753 -12.4070 -1.2701 21 6 0.4605 -11.0528 -1.2077 22 7 1.4456 -9.9694 -1.2525 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.8719 -3.6044 -0.8906 27 1 2.8719 -3.6044 0.8894 28 1 0.8533 -5.0451 0.8886 29 1 0.8539 -5.0446 -0.8913 30 1 3.3858 -5.9234 -0.0002 31 1 3.5894 -8.4587 -0.8911 32 1 3.5883 -8.4595 0.8889 33 1 3.8578 -11.0110 -0.7328 34 1 3.7687 -10.8883 1.0443 35 1 1.7777 -12.4615 -2.1769 36 1 0.4408 -13.2123 -1.2695 37 1 -0.2174 -10.9616 -2.0562 38 1 -0.1100 -10.9868 -0.2812 39 1 1.0089 -9.0948 -1.5028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085614680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:56 Heat of formation + Delta-G solvation = -60.543576 kcal Electronic energy + Delta-G solvation = -18360.675750 eV Core-core repulsion = 15428.217612 eV Total energy + Delta-G solvation = -2932.458138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.00652 -37.54138 -35.44830 -33.43295 -33.06758 -31.30476 -29.10393 -28.62294 -26.42447 -23.41722 -22.72946 -21.16194 -20.77327 -19.89385 -17.33630 -17.00484 -16.46116 -16.19475 -15.91775 -15.42501 -15.15604 -14.49775 -14.35222 -13.95621 -13.94449 -13.59233 -13.02333 -12.86862 -12.52939 -12.32680 -12.29976 -11.88961 -11.76478 -11.58904 -11.07872 -10.93911 -10.79500 -10.63579 -10.17198 -9.92780 -9.88082 -9.42181 -9.16161 -8.93882 -8.76651 -8.41194 -7.95633 -6.05788 -4.09121 1.50316 2.20893 2.62517 3.27950 3.28420 3.34723 3.37551 3.79909 4.37407 4.41343 4.55158 4.67737 4.85119 4.89187 4.99900 5.03081 5.09205 5.29807 5.30098 5.34728 5.44379 5.58021 5.65224 5.70178 5.77097 6.08780 6.37513 6.52796 6.72102 6.74945 6.93733 7.12371 7.58028 7.58673 7.70600 7.92564 8.24291 8.33882 8.97542 9.55345 11.05513 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.062179 B = 0.002534 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.204910 B =11047.734815 C =11326.719959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.723 5.723 13 C 0.508 3.492 14 O -0.550 6.550 15 C -0.141 4.141 16 C 0.105 3.895 17 H 0.063 0.937 18 C -0.071 4.071 19 S -0.276 6.276 20 C -0.075 4.075 21 C 0.060 3.940 22 N -0.696 5.696 23 H 0.261 0.739 24 H 0.018 0.982 25 H 0.019 0.981 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.400 0.600 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.048 0.952 39 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.540 -22.924 -1.452 23.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.373 5.373 13 C 0.294 3.706 14 O -0.429 6.429 15 C -0.183 4.183 16 C -0.007 4.007 17 H 0.081 0.919 18 C -0.220 4.220 19 S -0.049 6.049 20 C -0.224 4.224 21 C -0.071 4.071 22 N -0.333 5.333 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.233 0.767 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.049 -24.192 -0.998 24.957 hybrid contribution 0.207 2.442 -0.301 2.469 sum 6.256 -21.750 -1.299 22.669 Atomic orbital electron populations 1.69965 1.06081 1.26743 1.50484 1.25038 0.94866 0.99350 0.95228 0.86573 0.79796 0.83378 0.78121 1.20634 1.19880 1.21174 1.21197 0.92988 0.90929 1.51046 0.92638 1.19028 0.93838 0.90879 0.97634 1.21890 0.99773 0.93329 1.00895 1.21667 0.91896 0.85178 1.02002 1.46238 1.10945 1.05978 1.74106 1.20594 0.89627 0.84257 0.76103 1.90669 1.17025 1.84790 1.50425 1.21856 0.98789 0.92328 1.05352 1.21334 0.94666 0.91895 0.92830 0.91903 1.23573 0.99304 0.93064 1.06052 1.86912 1.49767 1.28839 1.39356 1.23552 1.00370 1.00498 0.98010 1.21984 0.93209 0.89855 1.02062 1.59819 1.30519 1.10749 1.32204 0.92888 0.96320 0.96283 0.92690 0.92717 0.91769 0.91705 0.76654 0.87779 0.87952 0.88927 0.87540 0.89145 0.87735 0.89795 0.93351 0.81226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.27 5.27 -26.73 -0.14 -2.42 16 11 C 0.12 1.92 5.67 -4.04 -0.02 1.89 16 12 N -0.72 -9.25 5.56 -60.30 -0.33 -9.58 16 13 C 0.51 6.47 7.40 -10.99 -0.08 6.39 16 14 O -0.55 -9.04 14.34 5.56 0.08 -8.96 16 15 C -0.14 -1.21 5.36 -27.88 -0.15 -1.36 16 16 C 0.10 1.02 1.96 -67.82 -0.13 0.89 16 17 H 0.06 0.75 7.72 -51.93 -0.40 0.35 16 18 C -0.07 -0.59 5.96 37.29 0.22 -0.37 16 19 S -0.28 -2.72 22.40 -107.50 -2.41 -5.13 16 20 C -0.08 -0.63 6.68 37.28 0.25 -0.38 16 21 C 0.06 0.56 6.39 -3.91 -0.03 0.54 16 22 N -0.70 -7.26 6.29 -107.05 -0.67 -7.93 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.40 3.99 8.47 -40.82 -0.35 3.65 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.51 7.91 -51.93 -0.41 0.10 16 39 H 0.36 4.41 6.43 -39.29 -0.25 4.16 16 LS Contribution 329.40 15.07 4.96 4.96 Total: -1.00 -31.48 329.40 -9.73 -41.22 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.45 Total: 2.63 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -0.63 Total: -7.59 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.27 Total: -43.38 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.08 Total: -8.96 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -2.72 SS G_CDS: -2.41 Total: -5.13 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.48 -9.73 -41.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085614680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.325 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds