Wall clock time and date at job start Mon Mar 30 2020 04:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47298 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00283 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99762 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00337 * 179.97438 * 13 12 11 16 16 C 1.53000 * 109.47352 * 179.97438 * 15 13 12 17 17 H 1.09005 * 109.40537 * 304.99594 * 16 15 13 18 18 C 1.53247 * 109.40567 * 185.15944 * 16 15 13 19 19 S 1.81905 * 108.50344 * 177.87501 * 18 16 15 20 20 C 1.81894 * 101.91242 * 51.30495 * 19 18 16 21 21 C 1.53246 * 108.50826 * 308.69373 * 20 19 18 22 22 N 1.46465 * 109.40873 * 64.83751 * 16 15 13 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 27 27 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 28 28 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 29 29 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 30 30 H 0.96997 * 119.99674 * 359.97438 * 12 11 10 31 31 H 1.09002 * 109.46875 * 299.99342 * 15 13 12 32 32 H 1.08998 * 109.46890 * 59.99540 * 15 13 12 33 33 H 1.09000 * 109.62897 * 297.58039 * 18 16 15 34 34 H 1.09002 * 109.63495 * 58.17218 * 18 16 15 35 35 H 1.09000 * 109.63774 * 68.39835 * 20 19 18 36 36 H 1.09000 * 109.63296 * 188.79125 * 20 19 18 37 37 H 1.08993 * 109.41114 * 182.12570 * 21 20 19 38 38 H 1.09006 * 109.40429 * 301.88703 * 21 20 19 39 39 H 1.00909 * 111.00117 * 317.88871 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0006 13 6 1.9830 -7.3713 -0.0015 14 8 0.7906 -7.5929 -0.0024 15 6 2.9622 -8.5168 -0.0014 16 6 2.1972 -9.8418 -0.0020 17 1 1.5052 -9.8608 0.8401 18 6 3.1893 -11.0026 0.1281 19 16 2.2511 -12.5598 0.1886 20 6 1.1753 -12.4070 -1.2701 21 6 0.4605 -11.0528 -1.2077 22 7 1.4456 -9.9694 -1.2525 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.8719 -3.6044 -0.8906 27 1 2.8719 -3.6044 0.8894 28 1 0.8533 -5.0451 0.8886 29 1 0.8539 -5.0446 -0.8913 30 1 3.3858 -5.9234 -0.0002 31 1 3.5894 -8.4587 -0.8911 32 1 3.5883 -8.4595 0.8889 33 1 3.8578 -11.0110 -0.7328 34 1 3.7687 -10.8883 1.0443 35 1 1.7777 -12.4615 -2.1769 36 1 0.4408 -13.2123 -1.2695 37 1 -0.2174 -10.9616 -2.0562 38 1 -0.1100 -10.9868 -0.2812 39 1 1.0089 -9.0948 -1.5028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085614680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:55 Heat of formation + Delta-G solvation = -82.851225 kcal Electronic energy + Delta-G solvation = -18361.643082 eV Core-core repulsion = 15428.217612 eV Total energy + Delta-G solvation = -2933.425470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.03341 -38.41181 -36.87460 -35.19439 -33.92911 -32.97353 -29.83283 -29.69637 -27.99172 -25.00081 -23.65015 -22.31660 -22.05926 -21.01068 -18.59647 -18.19204 -17.81502 -17.07760 -16.81565 -16.70733 -16.39089 -16.29012 -15.37673 -14.98653 -14.92194 -14.35560 -14.28167 -13.83626 -13.79798 -13.63039 -13.51989 -13.23151 -12.89522 -12.72399 -12.55570 -12.38787 -12.35906 -11.79581 -11.67825 -11.59904 -11.25499 -10.98369 -10.61139 -10.56427 -10.10851 -9.62078 -8.71830 -8.20626 -6.32158 0.81769 1.41495 1.42658 1.51682 1.53688 1.62223 2.24029 2.42361 3.04154 3.13343 3.56814 3.81688 3.96364 4.06869 4.15949 4.20253 4.20988 4.31272 4.35329 4.45869 4.54948 4.66967 4.68897 4.74332 4.86335 4.94106 5.00022 5.04949 5.16495 5.43484 5.52369 5.69830 5.83391 5.95156 6.21085 6.22266 6.58051 6.85857 7.25966 7.37747 8.91521 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.062179 B = 0.002534 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.204910 B =11047.734815 C =11326.719959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.259 1.259 6 H -0.285 1.285 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.102 4.102 11 C 0.130 3.870 12 N -0.713 5.713 13 C 0.506 3.494 14 O -0.591 6.591 15 C -0.128 4.128 16 C 0.105 3.895 17 H 0.036 0.964 18 C -0.058 4.058 19 S -0.316 6.316 20 C -0.064 4.064 21 C 0.058 3.942 22 N -0.696 5.696 23 H 0.263 0.737 24 H -0.010 1.010 25 H -0.009 1.009 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.417 0.583 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.104 0.896 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.030 0.970 39 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.280 -23.309 -1.723 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.183 1.183 6 H -0.211 1.211 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.140 4.140 11 C 0.005 3.995 12 N -0.364 5.364 13 C 0.294 3.706 14 O -0.473 6.473 15 C -0.169 4.169 16 C -0.008 4.008 17 H 0.054 0.946 18 C -0.207 4.207 19 S -0.089 6.089 20 C -0.212 4.212 21 C -0.073 4.073 22 N -0.332 5.332 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.010 0.990 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.254 0.746 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.115 0.885 36 H 0.136 0.864 37 H 0.112 0.888 38 H 0.048 0.952 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 8.843 -24.605 -1.266 26.177 hybrid contribution -0.706 2.522 -0.216 2.628 sum 8.136 -22.083 -1.482 23.581 Atomic orbital electron populations 1.70113 1.07981 1.27805 1.51744 1.26038 0.95741 1.03613 0.94796 0.85415 0.78713 0.78262 0.78461 1.19831 1.18333 1.21101 1.21693 0.93775 0.92015 1.50380 0.91468 1.18949 0.94485 0.93109 0.94947 1.21590 0.98377 0.91839 1.02149 1.21191 0.92046 0.85757 1.00470 1.45999 1.11222 1.05106 1.74093 1.21356 0.89795 0.84809 0.74645 1.90665 1.19230 1.85320 1.52045 1.21868 0.97735 0.89265 1.08012 1.21343 0.94618 0.93275 0.91524 0.94624 1.23576 0.98619 0.90972 1.07530 1.87059 1.50765 1.30366 1.40708 1.23534 1.00280 1.00130 0.97273 1.22023 0.93343 0.90333 1.01585 1.59919 1.30510 1.10258 1.32471 0.92819 0.99147 0.99037 0.91290 0.91356 0.93567 0.93291 0.74555 0.85323 0.84760 0.87776 0.85686 0.88526 0.86403 0.88803 0.95165 0.82510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.91 13.29 21.45 0.28 -56.62 16 2 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 3 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.54 -29.76 9.11 25.60 0.23 -29.53 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.17 4.97 29.85 0.15 1.31 16 10 C -0.10 -3.75 5.27 30.59 0.16 -3.59 16 11 C 0.13 4.31 5.67 86.38 0.49 4.80 16 12 N -0.71 -16.97 5.56 -463.08 -2.57 -19.54 16 13 C 0.51 12.17 7.40 87.66 0.65 12.82 16 14 O -0.59 -19.56 14.34 -3.03 -0.04 -19.60 16 15 C -0.13 -1.81 5.36 29.85 0.16 -1.65 16 16 C 0.10 1.87 1.96 45.08 0.09 1.96 16 17 H 0.04 0.84 7.72 -2.38 -0.02 0.83 16 18 C -0.06 -0.83 5.96 72.06 0.43 -0.40 16 19 S -0.32 -5.87 22.40 -56.49 -1.27 -7.14 16 20 C -0.06 -0.99 6.68 72.06 0.48 -0.51 16 21 C 0.06 1.07 6.39 86.46 0.55 1.62 16 22 N -0.70 -13.85 6.29 -492.59 -3.10 -16.95 16 23 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 24 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.42 7.01 8.47 -92.71 -0.79 6.22 16 31 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 34 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.03 0.66 7.91 -2.38 -0.02 0.64 16 39 H 0.35 8.44 6.43 -89.69 -0.58 7.87 16 Total: -1.00 -69.99 329.40 -1.14 -71.12 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -0.32 Total: 16.33 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 3.86 Total: -12.94 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -5.39 Total: -93.12 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.04 Total: -19.60 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -5.87 SS G_CDS: -1.27 Total: -7.14 kcal Total: -69.99 -1.14 -71.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085614680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.729 kcal (2) G-P(sol) polarization free energy of solvation -69.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds