Wall clock time and date at job start Mon Mar 30 2020 04:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99880 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99917 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00072 * 179.97438 * 11 10 9 14 14 N 1.46898 * 109.46886 * 180.02562 * 13 11 10 15 15 C 1.46904 * 110.99459 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.46707 * 179.97438 * 15 14 13 17 17 H 1.08996 * 109.57933 * 299.99648 * 16 15 14 18 18 C 1.53100 * 109.57450 * 179.74279 * 16 15 14 19 19 C 1.52567 * 109.96598 * 177.30292 * 18 16 15 20 20 C 1.52578 * 110.84240 * 70.48385 * 19 18 16 21 21 C 1.53099 * 109.95834 * 289.37172 * 20 19 18 22 22 S 1.81749 * 108.84028 * 63.02281 * 21 20 19 23 23 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 25 25 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 26 26 H 0.97002 * 120.00079 * 0.02562 * 10 9 7 27 27 H 1.08995 * 109.46839 * 300.00362 * 13 11 10 28 28 H 1.08998 * 109.46706 * 59.99946 * 13 11 10 29 29 H 1.00898 * 111.00098 * 303.95179 * 14 13 11 30 30 H 1.09000 * 109.46992 * 299.99659 * 15 14 13 31 31 H 1.09001 * 109.47155 * 59.99916 * 15 14 13 32 32 H 1.09003 * 109.39179 * 297.32100 * 18 16 15 33 33 H 1.09004 * 109.39190 * 57.02096 * 18 16 15 34 34 H 1.09001 * 109.12684 * 310.15075 * 19 18 16 35 35 H 1.08998 * 109.17034 * 190.83974 * 19 18 16 36 36 H 1.09004 * 109.39114 * 169.22443 * 20 19 18 37 37 H 1.08997 * 109.39083 * 49.51825 * 20 19 18 38 38 H 1.09005 * 109.57588 * 303.21961 * 21 20 19 39 39 H 1.08997 * 109.58191 * 182.83158 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 0.0025 12 8 0.5616 -5.1050 0.0017 13 6 2.7334 -6.0287 0.0032 14 7 1.9989 -7.3009 0.0033 15 6 2.9235 -8.4425 0.0046 16 6 2.1234 -9.7466 0.0053 17 1 1.4944 -9.7888 0.8945 18 6 3.0847 -10.9382 0.0002 19 6 2.2973 -12.2432 0.0684 20 6 1.5557 -12.4987 -1.2404 21 6 0.4004 -11.5052 -1.3890 22 16 1.0814 -9.8227 -1.4819 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6248 -2.5571 -0.8896 26 1 3.1569 -3.4353 0.0028 27 1 3.3600 -5.9714 -0.8867 28 1 3.3600 -5.9704 0.8932 29 1 1.3622 -7.3508 0.7845 30 1 3.5520 -8.4019 -0.8850 31 1 3.5508 -8.4010 0.8950 32 1 3.6761 -10.9221 -0.9153 33 1 3.7505 -10.8697 0.8605 34 1 1.5764 -12.1831 0.8837 35 1 2.9855 -13.0670 0.2577 36 1 1.1614 -13.5149 -1.2404 37 1 2.2451 -12.3796 -2.0762 38 1 -0.2621 -11.5839 -0.5269 39 1 -0.1555 -11.7250 -2.3004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087685318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:03 Heat of formation + Delta-G solvation = -60.820528 kcal Electronic energy + Delta-G solvation = -18247.540703 eV Core-core repulsion = 15315.070555 eV Total energy + Delta-G solvation = -2932.470147 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.97617 -37.60949 -35.76977 -34.33568 -32.45328 -32.09974 -28.93760 -27.28159 -25.62316 -23.76863 -22.40198 -21.93033 -21.00094 -19.72279 -17.65861 -17.16030 -16.18255 -15.91583 -15.50842 -15.12545 -14.81129 -14.38164 -14.14313 -14.01927 -13.80119 -13.63287 -13.02072 -12.79037 -12.59239 -12.26186 -12.19258 -12.16995 -11.59115 -11.50362 -11.44420 -11.28025 -11.00470 -10.75904 -10.65818 -10.17194 -9.67080 -9.17606 -8.77107 -8.66709 -8.42463 -7.96672 -7.58457 -6.50421 -4.23875 1.65284 2.50267 3.32258 3.37750 3.41668 3.57122 3.67532 4.25019 4.36446 4.40733 4.47776 4.55588 4.70126 4.79812 4.91979 5.08044 5.19872 5.26441 5.28551 5.32012 5.37373 5.44610 5.47777 5.49279 5.58837 5.61532 5.65022 5.70279 5.89247 6.80220 7.04311 7.24666 7.32465 7.35695 7.68290 8.28559 8.49287 8.73291 9.02593 9.50205 10.89892 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.055860 B = 0.002745 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.133760 B =10197.773980 C =10507.048072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 1.079 2.921 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.623 4.623 8 H 0.057 0.943 9 C 0.241 3.759 10 N -0.710 5.710 11 C 0.497 3.503 12 O -0.541 6.541 13 C 0.042 3.958 14 N -0.664 5.664 15 C 0.078 3.922 16 C -0.054 4.054 17 H 0.085 0.915 18 C -0.116 4.116 19 C -0.128 4.128 20 C -0.121 4.121 21 C -0.104 4.104 22 S -0.207 6.207 23 H 0.273 0.727 24 H 0.016 0.984 25 H 0.017 0.983 26 H 0.392 0.608 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.351 0.649 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.672 -24.825 0.558 26.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.184 4.184 3 Si 0.906 3.094 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.661 4.661 8 H 0.075 0.925 9 C 0.119 3.881 10 N -0.360 5.360 11 C 0.281 3.719 12 O -0.419 6.419 13 C -0.090 4.090 14 N -0.297 5.297 15 C -0.053 4.053 16 C -0.184 4.184 17 H 0.103 0.897 18 C -0.156 4.156 19 C -0.166 4.166 20 C -0.160 4.160 21 C -0.252 4.252 22 S 0.020 5.980 23 H 0.084 0.916 24 H 0.033 0.967 25 H 0.035 0.965 26 H 0.224 0.776 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.171 0.829 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.301 -22.512 -0.906 23.683 hybrid contribution 1.163 -2.499 1.873 3.333 sum 8.464 -25.011 0.967 26.422 Atomic orbital electron populations 1.70726 1.06884 1.31122 1.45002 1.25886 0.96441 1.02762 0.93332 0.83406 0.74514 0.74621 0.76829 1.21302 1.21374 1.20769 1.22092 0.94558 0.91534 1.57943 0.92476 1.19147 0.89013 0.83484 0.96417 1.46257 1.10963 1.05789 1.72961 1.20388 0.89614 0.84208 0.77728 1.90672 1.16657 1.84679 1.49883 1.21809 0.95592 0.89369 1.02262 1.60078 1.18396 0.99610 1.51614 1.21795 0.93860 0.88210 1.01411 1.23257 0.98722 0.97451 0.98941 0.89671 1.21764 0.97596 0.92871 1.03377 1.21505 0.99545 0.97617 0.97894 1.21714 0.97050 0.98736 0.98467 1.23550 1.00190 0.95800 1.05691 1.87626 1.60140 1.16413 1.33836 0.91627 0.96662 0.96510 0.77557 0.88496 0.92877 0.82898 0.89940 0.93991 0.90439 0.90946 0.91853 0.91149 0.91246 0.90684 0.90228 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.65 55.43 0.76 -26.95 16 2 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 3 Si 1.08 24.67 29.90 -169.99 -5.08 19.59 16 4 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.62 -17.35 9.28 -34.44 -0.32 -17.67 16 8 H 0.06 1.50 7.60 -52.49 -0.40 1.11 16 9 C 0.24 6.48 4.74 -5.19 -0.02 6.45 16 10 N -0.71 -15.25 5.55 -61.47 -0.34 -15.59 16 11 C 0.50 10.05 7.87 -10.98 -0.09 9.97 16 12 O -0.54 -13.29 16.20 5.56 0.09 -13.20 16 13 C 0.04 0.60 6.17 -4.98 -0.03 0.57 16 14 N -0.66 -9.28 5.68 -115.06 -0.65 -9.93 16 15 C 0.08 0.80 5.14 -3.82 -0.02 0.78 16 16 C -0.05 -0.52 2.74 -26.68 -0.07 -0.59 16 17 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 18 C -0.12 -0.84 5.05 -26.90 -0.14 -0.97 16 19 C -0.13 -0.82 5.61 -27.17 -0.15 -0.98 16 20 C -0.12 -0.82 5.75 -26.90 -0.15 -0.98 16 21 C -0.10 -0.89 6.46 37.21 0.24 -0.65 16 22 S -0.21 -2.48 21.30 -107.50 -2.29 -4.77 16 23 H 0.27 8.51 7.22 -40.82 -0.29 8.21 16 24 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 25 H 0.02 0.50 8.01 -51.93 -0.42 0.08 16 26 H 0.39 7.23 8.32 -40.82 -0.34 6.89 16 27 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.35 5.13 8.43 -39.29 -0.33 4.79 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.57 8.06 -51.93 -0.42 0.15 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 331.07 15.07 4.99 4.99 Total: -1.00 -33.50 331.07 -9.86 -43.36 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.48 Total: 6.04 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -0.85 Total: -3.55 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.24 Total: -52.47 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.08 Total: 19.59 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -2.29 Total: -4.77 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.50 -9.86 -43.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087685318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.458 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds