Wall clock time and date at job start Mon Mar 30 2020 05:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46893 * 109.46924 * 2 1 4 4 C 1.46898 * 111.00451 * 291.88898 * 3 2 1 5 5 C 1.50702 * 109.46811 * 289.09350 * 4 3 2 6 6 H 1.07997 * 120.00141 * 357.01885 * 5 4 3 7 7 C 1.37884 * 119.99862 * 177.01227 * 5 4 3 8 8 N 1.31510 * 119.99946 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99930 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46966 * 90.00166 * 9 7 5 11 11 H 1.48496 * 109.47299 * 210.00467 * 9 7 5 12 12 H 1.48503 * 109.47407 * 330.00728 * 9 7 5 13 13 C 1.37892 * 111.00157 * 55.84558 * 3 2 1 14 14 N 1.32713 * 120.87898 * 256.42758 * 13 3 2 15 15 C 1.32314 * 121.51262 * 180.25381 * 14 13 3 16 16 N 1.31219 * 122.93721 * 359.47163 * 15 14 13 17 17 C 1.34204 * 120.45016 * 0.25549 * 16 15 14 18 18 C 1.39896 * 121.89127 * 180.02562 * 17 16 15 19 19 C 1.38076 * 119.43667 * 179.97438 * 18 17 16 20 20 N 1.39314 * 119.64833 * 180.02562 * 19 18 17 21 21 C 1.39969 * 120.70839 * 359.97438 * 19 18 17 22 22 C 1.36126 * 120.81226 * 0.02562 * 21 19 18 23 23 C 1.40056 * 119.75293 * 359.97438 * 22 21 19 24 24 H 1.09000 * 109.47397 * 63.93932 * 1 2 3 25 25 H 1.08999 * 109.47154 * 183.94464 * 1 2 3 26 26 H 1.08998 * 109.46608 * 303.93728 * 1 2 3 27 27 H 1.09001 * 109.46557 * 240.00679 * 2 1 3 28 28 H 1.08995 * 109.47386 * 120.00446 * 2 1 3 29 29 H 1.09002 * 109.47086 * 49.09372 * 4 3 2 30 30 H 1.09001 * 109.47599 * 169.09729 * 4 3 2 31 31 H 0.97002 * 120.00053 * 179.97438 * 8 7 5 32 32 H 1.07994 * 118.53394 * 179.75491 * 15 14 13 33 33 H 1.08001 * 120.28175 * 359.97438 * 18 17 16 34 34 H 0.97004 * 120.00192 * 179.97438 * 20 19 18 35 35 H 0.97003 * 120.00185 * 359.97438 * 20 19 18 36 36 H 1.07993 * 119.59213 * 180.02562 * 21 19 18 37 37 H 1.08001 * 120.12276 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7131 2.0518 -1.2725 5 6 2.5798 1.4761 -2.3627 6 1 3.3210 0.7275 -2.1248 7 6 2.4264 1.9051 -3.6641 8 7 1.5241 2.8170 -3.9539 9 14 3.5002 1.1911 -5.0156 10 1 2.8375 -0.0053 -5.5942 11 1 3.7002 2.2087 -6.0785 12 1 4.8164 0.8021 -4.4487 13 6 1.5030 2.0918 1.0653 14 7 0.5178 2.9636 0.8906 15 6 0.0160 3.6522 1.9029 16 7 0.4415 3.5188 3.1370 17 6 1.4313 2.6599 3.4261 18 6 1.9078 2.4934 4.7309 19 6 2.9283 1.5948 4.9711 20 7 3.4059 1.4251 6.2687 21 6 3.4875 0.8519 3.9249 22 6 3.0388 0.9984 2.6481 23 6 2.0047 1.9024 2.3742 24 1 -0.3634 0.4515 -0.9232 25 1 -0.3633 -1.0252 0.0707 26 1 -0.3632 0.5737 0.8526 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.6637 1.8946 -1.5215 30 1 1.9084 3.1201 -1.1792 31 1 1.4165 3.1191 -4.8693 32 1 -0.7825 4.3520 1.7054 33 1 1.4811 3.0628 5.5433 34 1 4.1224 0.7950 6.4434 35 1 3.0219 1.9370 6.9977 36 1 4.2847 0.1538 4.1333 37 1 3.4786 0.4197 1.8493 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087820691.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:29 Heat of formation + Delta-G solvation = 77.925948 kcal Electronic energy + Delta-G solvation = -20687.277095 eV Core-core repulsion = 17657.672246 eV Total energy + Delta-G solvation = -3029.604849 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.99388 -38.27148 -37.20968 -34.17176 -33.00727 -32.35147 -30.21724 -29.27595 -29.20211 -26.65003 -24.38794 -23.36358 -22.88290 -22.00057 -20.33547 -18.21298 -17.68468 -17.03862 -16.28417 -15.77063 -15.50695 -15.34714 -14.67777 -14.35409 -13.86182 -13.68252 -13.58591 -13.12659 -12.75960 -12.62953 -12.47291 -11.99738 -11.74994 -11.49848 -11.18058 -10.83409 -10.73854 -10.56460 -10.43206 -10.27475 -10.22881 -9.97667 -9.35129 -8.65227 -8.53287 -8.35033 -7.65138 -7.49797 -6.04517 -4.08125 0.68916 1.24672 2.28536 3.29807 3.32769 3.36633 3.39766 3.66028 4.18450 4.44572 4.54198 4.60225 4.85552 4.99239 5.10739 5.30029 5.32707 5.48567 5.51500 5.69888 5.73206 5.91155 6.00244 6.12746 6.19011 6.28357 6.41996 6.47278 6.61367 6.69697 6.78514 7.10732 7.33924 7.39374 7.56026 7.60460 7.75210 7.88454 8.06165 8.40982 8.75517 8.99083 9.55402 11.05482 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025766 B = 0.005052 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.458558 B = 5541.074034 C = 6014.801001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.069 3.931 3 N -0.479 5.479 4 C 0.199 3.801 5 C -0.519 4.519 6 H 0.064 0.936 7 C 0.060 3.940 8 N -0.890 5.890 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.429 3.571 14 N -0.576 5.576 15 C 0.332 3.668 16 N -0.560 5.560 17 C 0.217 3.783 18 C -0.220 4.220 19 C 0.251 3.749 20 N -0.872 5.872 21 C -0.202 4.202 22 C -0.004 4.004 23 C -0.209 4.209 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.024 0.976 30 H 0.035 0.965 31 H 0.262 0.738 32 H 0.185 0.815 33 H 0.129 0.871 34 H 0.398 0.602 35 H 0.399 0.601 36 H 0.125 0.875 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.651 -5.103 16.888 17.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.057 4.057 3 N -0.197 5.197 4 C 0.076 3.924 5 C -0.558 4.558 6 H 0.082 0.918 7 C -0.142 4.142 8 N -0.529 5.529 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 C 0.179 3.821 14 N -0.297 5.297 15 C 0.042 3.958 16 N -0.279 5.279 17 C 0.089 3.911 18 C -0.246 4.246 19 C 0.142 3.858 20 N -0.410 5.410 21 C -0.223 4.223 22 C -0.025 4.025 23 C -0.217 4.217 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.202 0.798 33 H 0.147 0.853 34 H 0.227 0.773 35 H 0.227 0.773 36 H 0.143 0.857 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.357 -4.376 16.611 17.231 hybrid contribution 0.593 -0.649 -0.451 0.988 sum 1.950 -5.025 16.160 17.035 Atomic orbital electron populations 1.22397 0.97459 1.01325 1.02906 1.22127 0.93356 0.87111 1.03100 1.59381 1.52048 1.03327 1.04938 1.19823 0.96931 0.94383 0.81265 1.21133 1.19494 1.23674 0.91509 0.91832 1.24951 0.95540 0.95117 0.98620 1.69978 1.33613 1.29674 1.19608 0.86509 0.80800 0.78688 0.81481 1.20663 1.21233 1.19792 1.20606 0.83529 0.88131 0.89792 1.68736 1.11900 1.12955 1.36129 1.24668 0.95144 0.92665 0.83356 1.68808 1.15115 1.21435 1.22497 1.18420 0.90313 0.89729 0.92602 1.19918 1.02891 1.06148 0.95637 1.17709 0.91007 0.91864 0.85176 1.42460 1.43293 1.49216 1.06047 1.20431 1.04766 1.04786 0.92329 1.20825 0.92080 0.93344 0.96243 1.19060 1.03303 1.04925 0.94449 0.90825 0.92555 0.93675 0.88102 0.91818 0.95803 0.94662 0.92808 0.79796 0.85306 0.77347 0.77272 0.85705 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 9.33 37.16 0.35 -2.88 16 2 C 0.07 1.24 5.60 -3.82 -0.02 1.22 16 3 N -0.48 -10.22 4.07 -174.06 -0.71 -10.93 16 4 C 0.20 5.15 3.84 -4.98 -0.02 5.13 16 5 C -0.52 -14.12 8.41 -34.44 -0.29 -14.41 16 6 H 0.06 1.68 7.59 -52.49 -0.40 1.28 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 9 Si 0.90 21.13 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.43 8.77 4.41 -154.93 -0.68 8.08 16 14 N -0.58 -12.06 8.68 -13.56 -0.12 -12.18 16 15 C 0.33 6.07 12.22 -92.20 -1.13 4.94 16 16 N -0.56 -10.17 10.45 -12.67 -0.13 -10.30 16 17 C 0.22 3.80 6.61 -84.87 -0.56 3.24 16 18 C -0.22 -3.15 9.87 -39.02 -0.38 -3.54 16 19 C 0.25 2.99 6.74 -83.87 -0.56 2.43 16 20 N -0.87 -6.73 9.06 32.39 0.29 -6.43 16 21 C -0.20 -2.47 9.79 -39.69 -0.39 -2.86 16 22 C 0.00 -0.06 8.70 -39.66 -0.34 -0.40 16 23 C -0.21 -3.77 5.70 -106.65 -0.61 -4.38 16 24 H 0.07 1.48 6.59 -51.93 -0.34 1.14 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.83 6.71 -51.93 -0.35 0.48 16 27 H 0.10 1.89 7.11 -51.93 -0.37 1.52 16 28 H 0.06 0.98 6.52 -51.93 -0.34 0.64 16 29 H 0.02 0.66 6.24 -51.93 -0.32 0.34 16 30 H 0.04 1.02 7.76 -51.93 -0.40 0.62 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.19 2.73 8.06 -52.49 -0.42 2.30 16 33 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.40 2.20 8.83 -40.82 -0.36 1.84 16 35 H 0.40 2.43 8.82 -40.82 -0.36 2.07 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.14 2.03 6.73 -52.49 -0.35 1.68 16 LS Contribution 306.60 15.07 4.62 4.62 Total: -1.00 -32.00 306.60 -9.49 -41.50 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -4.42 Total: 4.91 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -4.74 Total: -1.86 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: 0.07 Total: -65.28 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.00 -9.49 -41.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087820691.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.423 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds