Wall clock time and date at job start Mon Mar 30 2020 05:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46893 * 109.46924 * 2 1 4 4 C 1.46898 * 111.00451 * 291.88898 * 3 2 1 5 5 C 1.50702 * 109.46811 * 289.09350 * 4 3 2 6 6 H 1.07997 * 120.00141 * 357.01885 * 5 4 3 7 7 C 1.37884 * 119.99862 * 177.01227 * 5 4 3 8 8 N 1.31510 * 119.99946 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99930 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46966 * 90.00166 * 9 7 5 11 11 H 1.48496 * 109.47299 * 210.00467 * 9 7 5 12 12 H 1.48503 * 109.47407 * 330.00728 * 9 7 5 13 13 C 1.37892 * 111.00157 * 55.84558 * 3 2 1 14 14 N 1.32713 * 120.87898 * 256.42758 * 13 3 2 15 15 C 1.32314 * 121.51262 * 180.25381 * 14 13 3 16 16 N 1.31219 * 122.93721 * 359.47163 * 15 14 13 17 17 C 1.34204 * 120.45016 * 0.25549 * 16 15 14 18 18 C 1.39896 * 121.89127 * 180.02562 * 17 16 15 19 19 C 1.38076 * 119.43667 * 179.97438 * 18 17 16 20 20 N 1.39314 * 119.64833 * 180.02562 * 19 18 17 21 21 C 1.39969 * 120.70839 * 359.97438 * 19 18 17 22 22 C 1.36126 * 120.81226 * 0.02562 * 21 19 18 23 23 C 1.40056 * 119.75293 * 359.97438 * 22 21 19 24 24 H 1.09000 * 109.47397 * 63.93932 * 1 2 3 25 25 H 1.08999 * 109.47154 * 183.94464 * 1 2 3 26 26 H 1.08998 * 109.46608 * 303.93728 * 1 2 3 27 27 H 1.09001 * 109.46557 * 240.00679 * 2 1 3 28 28 H 1.08995 * 109.47386 * 120.00446 * 2 1 3 29 29 H 1.09002 * 109.47086 * 49.09372 * 4 3 2 30 30 H 1.09001 * 109.47599 * 169.09729 * 4 3 2 31 31 H 0.97002 * 120.00053 * 179.97438 * 8 7 5 32 32 H 1.07994 * 118.53394 * 179.75491 * 15 14 13 33 33 H 1.08001 * 120.28175 * 359.97438 * 18 17 16 34 34 H 0.97004 * 120.00192 * 179.97438 * 20 19 18 35 35 H 0.97003 * 120.00185 * 359.97438 * 20 19 18 36 36 H 1.07993 * 119.59213 * 180.02562 * 21 19 18 37 37 H 1.08001 * 120.12276 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7131 2.0518 -1.2725 5 6 2.5798 1.4761 -2.3627 6 1 3.3210 0.7275 -2.1248 7 6 2.4264 1.9051 -3.6641 8 7 1.5241 2.8170 -3.9539 9 14 3.5002 1.1911 -5.0156 10 1 2.8375 -0.0053 -5.5942 11 1 3.7002 2.2087 -6.0785 12 1 4.8164 0.8021 -4.4487 13 6 1.5030 2.0918 1.0653 14 7 0.5178 2.9636 0.8906 15 6 0.0160 3.6522 1.9029 16 7 0.4415 3.5188 3.1370 17 6 1.4313 2.6599 3.4261 18 6 1.9078 2.4934 4.7309 19 6 2.9283 1.5948 4.9711 20 7 3.4059 1.4251 6.2687 21 6 3.4875 0.8519 3.9249 22 6 3.0388 0.9984 2.6481 23 6 2.0047 1.9024 2.3742 24 1 -0.3634 0.4515 -0.9232 25 1 -0.3633 -1.0252 0.0707 26 1 -0.3632 0.5737 0.8526 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.6637 1.8946 -1.5215 30 1 1.9084 3.1201 -1.1792 31 1 1.4165 3.1191 -4.8693 32 1 -0.7825 4.3520 1.7054 33 1 1.4811 3.0628 5.5433 34 1 4.1224 0.7950 6.4434 35 1 3.0219 1.9370 6.9977 36 1 4.2847 0.1538 4.1333 37 1 3.4786 0.4197 1.8493 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087820691.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:28 Heat of formation + Delta-G solvation = 56.157014 kcal Electronic energy + Delta-G solvation = -20688.221066 eV Core-core repulsion = 17657.672246 eV Total energy + Delta-G solvation = -3030.548821 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.33207 -39.54151 -38.60836 -35.23129 -34.87738 -33.91846 -31.57876 -30.80819 -30.38482 -28.46470 -25.73609 -24.94246 -24.37399 -23.32414 -21.80004 -19.39498 -19.04305 -18.44040 -17.91288 -17.09594 -17.01638 -16.62029 -16.28245 -15.86702 -15.28951 -14.97548 -14.91248 -14.47708 -14.28111 -13.89379 -13.72127 -13.65226 -13.24666 -12.91991 -12.88282 -12.69364 -12.50276 -12.13123 -11.96089 -11.74250 -11.53214 -11.51182 -11.34880 -10.60619 -10.06407 -9.84812 -9.02416 -8.60243 -8.17231 -6.29528 -0.58347 0.01231 1.01776 1.44096 1.45979 1.57132 2.14467 2.40006 2.77358 2.83711 3.15591 3.20900 3.37132 3.53710 3.82073 3.93058 4.09479 4.19233 4.24910 4.31554 4.50326 4.51496 4.79085 4.81893 4.95278 5.01470 5.09695 5.20196 5.23397 5.32974 5.41049 5.47948 5.64748 5.67543 5.91924 6.02542 6.34406 6.47392 6.52353 6.85082 6.96950 7.35714 7.41273 8.93756 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025766 B = 0.005052 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.458558 B = 5541.074034 C = 6014.801001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.067 3.933 3 N -0.480 5.480 4 C 0.226 3.774 5 C -0.530 4.530 6 H 0.072 0.928 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.972 3.028 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.261 1.261 13 C 0.405 3.595 14 N -0.614 5.614 15 C 0.317 3.683 16 N -0.563 5.563 17 C 0.193 3.807 18 C -0.236 4.236 19 C 0.271 3.729 20 N -0.846 5.846 21 C -0.179 4.179 22 C -0.021 4.021 23 C -0.222 4.222 24 H 0.038 0.962 25 H 0.089 0.911 26 H 0.034 0.966 27 H 0.093 0.907 28 H 0.099 0.901 29 H -0.006 1.006 30 H -0.010 1.010 31 H 0.264 0.736 32 H 0.206 0.794 33 H 0.141 0.859 34 H 0.415 0.585 35 H 0.411 0.589 36 H 0.166 0.834 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.914 -7.322 19.352 21.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.058 4.058 3 N -0.198 5.198 4 C 0.101 3.899 5 C -0.568 4.568 6 H 0.090 0.910 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.796 3.204 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.185 1.185 13 C 0.157 3.843 14 N -0.336 5.336 15 C 0.026 3.974 16 N -0.281 5.281 17 C 0.066 3.934 18 C -0.262 4.262 19 C 0.158 3.842 20 N -0.384 5.384 21 C -0.200 4.200 22 C -0.042 4.042 23 C -0.230 4.230 24 H 0.057 0.943 25 H 0.107 0.893 26 H 0.053 0.947 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.011 0.989 30 H 0.008 0.992 31 H 0.072 0.928 32 H 0.223 0.777 33 H 0.159 0.841 34 H 0.246 0.754 35 H 0.242 0.758 36 H 0.184 0.816 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.645 -6.620 19.164 20.601 hybrid contribution -0.052 0.013 -0.912 0.913 sum 3.594 -6.607 18.253 19.742 Atomic orbital electron populations 1.22263 0.97434 1.02705 1.00498 1.22263 0.93414 0.85813 1.04326 1.59378 1.52926 1.04329 1.03182 1.19224 0.94921 0.92161 0.83632 1.21477 1.19572 1.23618 0.92130 0.90973 1.25930 0.96833 0.95323 1.01359 1.70139 1.35546 1.31303 1.20205 0.85342 0.79166 0.77951 0.77903 1.19497 1.21277 1.18521 1.20739 0.84390 0.88572 0.90621 1.68642 1.13276 1.14039 1.37661 1.25024 0.95891 0.93254 0.83214 1.68824 1.15496 1.21697 1.22076 1.18856 0.90621 0.89986 0.93926 1.20054 1.04098 1.07534 0.94559 1.17751 0.89498 0.90117 0.86787 1.42469 1.42671 1.48619 1.04659 1.20839 1.04252 1.03913 0.90956 1.20918 0.91918 0.93523 0.97841 1.19149 1.04486 1.06228 0.93107 0.94332 0.89255 0.94735 0.88845 0.88299 0.98854 0.99211 0.92764 0.77748 0.84130 0.75366 0.75843 0.81620 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.21 9.33 71.98 0.67 -5.54 16 2 C 0.07 2.44 5.60 86.31 0.48 2.92 16 3 N -0.48 -21.28 4.07 -704.61 -2.87 -24.15 16 4 C 0.23 12.41 3.84 85.56 0.33 12.73 16 5 C -0.53 -29.67 8.41 25.60 0.22 -29.46 16 6 H 0.07 3.83 7.59 -2.91 -0.02 3.80 16 7 C 0.00 0.23 5.46 84.66 0.46 0.69 16 8 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 9 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 12 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 13 C 0.40 17.28 4.41 133.92 0.59 17.87 16 14 N -0.61 -27.55 8.68 -196.82 -1.71 -29.26 16 15 C 0.32 12.23 12.22 180.90 2.21 14.44 16 16 N -0.56 -20.90 10.45 -194.00 -2.03 -22.92 16 17 C 0.19 6.71 6.61 40.05 0.26 6.97 16 18 C -0.24 -6.23 9.87 22.63 0.22 -6.00 16 19 C 0.27 5.33 6.74 38.33 0.26 5.59 16 20 N -0.85 -8.59 9.06 -51.44 -0.47 -9.06 16 21 C -0.18 -3.59 9.79 22.20 0.22 -3.37 16 22 C -0.02 -0.58 8.70 22.22 0.19 -0.39 16 23 C -0.22 -7.98 5.70 -21.18 -0.12 -8.10 16 24 H 0.04 1.65 6.59 -2.39 -0.02 1.63 16 25 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.03 1.31 6.71 -2.39 -0.02 1.29 16 27 H 0.09 3.52 7.11 -2.39 -0.02 3.50 16 28 H 0.10 2.89 6.52 -2.39 -0.02 2.88 16 29 H -0.01 -0.39 6.24 -2.39 -0.01 -0.40 16 30 H -0.01 -0.65 7.76 -2.39 -0.02 -0.67 16 31 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.21 6.52 8.06 -2.91 -0.02 6.49 16 33 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 34 H 0.42 2.07 8.83 -92.71 -0.82 1.25 16 35 H 0.41 2.95 8.82 -92.71 -0.82 2.13 16 36 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 37 H 0.15 3.87 6.73 -2.91 -0.02 3.85 16 Total: -1.00 -74.23 306.60 0.72 -73.51 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -0.52 Total: 14.51 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 6.00 Total: 8.36 kcal Atomic # 7 Polarization: -135.37 SS G_CDS: -6.78 Total: -142.15 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -74.23 0.72 -73.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087820691.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.665 kcal (2) G-P(sol) polarization free energy of solvation -74.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds