Wall clock time and date at job start Mon Mar 30 2020 05:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47804 * 2 1 4 4 C 1.50705 * 109.47195 * 240.00357 * 2 1 3 5 5 H 1.08009 * 119.99989 * 245.37863 * 4 2 1 6 6 C 1.37875 * 119.99990 * 65.37237 * 4 2 1 7 7 N 1.31513 * 119.99848 * 185.17120 * 6 4 2 8 8 Si 1.86798 * 120.00002 * 5.16901 * 6 4 2 9 9 H 1.48501 * 109.46960 * 270.00021 * 8 6 4 10 10 H 1.48504 * 109.46972 * 30.00005 * 8 6 4 11 11 H 1.48497 * 109.46828 * 150.00067 * 8 6 4 12 12 O 1.45199 * 109.47434 * 120.00521 * 2 1 3 13 13 C 1.34228 * 116.99833 * 270.00055 * 12 2 1 14 14 O 1.20826 * 119.99942 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00103 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.47275 * 304.99720 * 15 13 12 17 17 C 1.52996 * 109.47319 * 64.99543 * 15 13 12 18 18 O 1.42900 * 109.47361 * 184.99637 * 15 13 12 19 19 C 1.42903 * 113.99949 * 149.99682 * 18 15 13 20 20 C 1.53004 * 109.46907 * 180.02562 * 19 18 15 21 21 H 1.08998 * 109.82549 * 305.56797 * 20 19 18 22 22 C 1.54379 * 109.83088 * 184.58635 * 20 19 18 23 23 C 1.55305 * 102.25432 * 219.13178 * 22 20 19 24 24 C 1.54941 * 100.94072 * 34.13522 * 23 22 20 25 25 O 1.43242 * 109.83105 * 66.45669 * 20 19 18 26 26 H 1.08995 * 109.46839 * 54.97321 * 1 2 3 27 27 H 1.09001 * 109.47403 * 174.97558 * 1 2 3 28 28 H 1.08999 * 109.46930 * 294.96900 * 1 2 3 29 29 H 0.97002 * 120.00073 * 354.99391 * 7 6 4 30 30 H 1.08995 * 109.47485 * 300.00522 * 17 15 13 31 31 H 1.09006 * 109.47361 * 60.00317 * 17 15 13 32 32 H 1.09001 * 109.47028 * 179.97438 * 17 15 13 33 33 H 1.09003 * 109.47413 * 300.00199 * 19 18 15 34 34 H 1.08993 * 109.47152 * 60.00653 * 19 18 15 35 35 H 1.09005 * 110.84929 * 337.32082 * 22 20 19 36 36 H 1.09005 * 110.84595 * 100.94005 * 22 20 19 37 37 H 1.09001 * 111.12315 * 276.21198 * 23 22 20 38 38 H 1.09007 * 111.12446 * 152.05497 * 23 22 20 39 39 H 1.09006 * 110.31114 * 204.63817 * 24 23 22 40 40 H 1.08998 * 110.39550 * 82.51557 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5797 -1.6364 -1.1339 6 6 1.7930 -0.1782 -2.4797 7 7 2.1412 -0.8471 -3.5572 8 14 0.9742 1.4929 -2.6418 9 1 -0.4990 1.3180 -2.7072 10 1 1.3215 2.3305 -1.4657 11 1 1.4492 2.1587 -3.8813 12 8 2.0140 -0.6846 1.1855 13 6 2.2172 0.0639 2.2811 14 8 1.9982 1.2517 2.2504 15 6 2.7183 -0.5774 3.5494 16 1 2.0556 -1.3964 3.8289 17 6 4.1311 -1.1193 3.3232 18 8 2.7430 0.3942 4.5969 19 6 2.5326 -0.1514 5.9008 20 6 2.5787 0.9728 6.9376 21 1 3.5113 1.5284 6.8393 22 6 2.4675 0.3797 8.3586 23 6 1.5583 1.4136 9.0772 24 6 0.6283 1.8449 7.9154 25 8 1.4656 1.8543 6.7483 26 1 -0.3633 0.5898 -0.8415 27 1 -0.3634 -1.0237 -0.0900 28 1 -0.3633 0.4338 0.9316 29 1 2.6310 -1.6802 -3.4736 30 1 4.1124 -1.8604 2.5241 31 1 4.7940 -0.3004 3.0436 32 1 4.4937 -1.5827 4.2407 33 1 1.5587 -0.6396 5.9377 34 1 3.3129 -0.8802 6.1199 35 1 1.9940 -0.6018 8.3334 36 1 3.4467 0.3272 8.8347 37 1 2.1402 2.2572 9.4486 38 1 0.9909 0.9456 9.8817 39 1 0.2275 2.8413 8.1015 40 1 -0.1837 1.1281 7.7927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113692100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:07 Heat of formation + Delta-G solvation = -185.281876 kcal Electronic energy + Delta-G solvation = -21427.436502 eV Core-core repulsion = 18014.523683 eV Total energy + Delta-G solvation = -3412.912818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.01554 -39.60211 -37.72478 -35.67491 -33.28151 -32.52103 -32.00537 -30.52487 -29.96447 -25.88628 -25.02559 -24.31228 -22.10898 -21.44498 -21.28479 -19.58394 -17.79351 -17.36533 -17.08578 -16.64417 -16.20124 -15.90559 -15.26177 -14.96406 -14.43841 -14.10533 -13.76106 -13.51092 -13.05135 -12.84035 -12.80299 -12.45022 -12.17523 -12.07948 -11.99877 -11.80448 -11.61640 -11.51105 -11.49960 -11.18981 -11.12057 -10.62775 -10.09351 -9.99916 -9.86778 -9.67687 -9.61858 -9.39636 -8.74515 -8.55991 -6.59811 -4.24787 2.86145 2.92068 3.32959 3.43616 3.56420 3.58232 3.98350 4.11559 4.38331 4.47994 4.60938 4.82388 4.86402 4.94297 5.03875 5.10856 5.16238 5.17377 5.27326 5.31997 5.35367 5.41387 5.49907 5.62155 5.72314 5.75338 5.84857 6.19158 6.23378 6.37933 6.46904 6.66548 6.82592 7.08661 7.11711 7.40856 7.80584 8.25761 8.53669 8.84593 9.44630 10.83038 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.035041 B = 0.003738 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.878536 B = 7487.938472 C = 7992.439106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.189 3.811 3 H 0.046 0.954 4 C -0.598 4.598 5 H 0.069 0.931 6 C 0.036 3.964 7 N -0.902 5.902 8 Si 1.045 2.955 9 H -0.278 1.278 10 H -0.274 1.274 11 H -0.283 1.283 12 O -0.344 6.344 13 C 0.450 3.550 14 O -0.498 6.498 15 C 0.097 3.903 16 H 0.092 0.908 17 C -0.167 4.167 18 O -0.350 6.350 19 C 0.050 3.950 20 C 0.083 3.917 21 H 0.090 0.910 22 C -0.148 4.148 23 C -0.156 4.156 24 C 0.045 3.955 25 O -0.363 6.363 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.035 0.965 29 H 0.271 0.729 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.330 0.015 25.177 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.135 3.865 3 H 0.064 0.936 4 C -0.636 4.636 5 H 0.087 0.913 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.874 3.126 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.209 1.209 12 O -0.260 6.260 13 C 0.290 3.710 14 O -0.386 6.386 15 C 0.038 3.962 16 H 0.110 0.890 17 C -0.225 4.225 18 O -0.268 6.268 19 C -0.027 4.027 20 C 0.026 3.974 21 H 0.108 0.892 22 C -0.186 4.186 23 C -0.193 4.193 24 C -0.032 4.032 25 O -0.282 6.282 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.338 1.765 23.769 23.836 hybrid contribution 0.484 -1.525 1.313 2.070 sum 0.146 0.240 25.082 25.083 Atomic orbital electron populations 1.22461 0.98322 1.01847 0.99788 1.21095 0.90740 0.94699 0.79942 0.93619 1.22003 1.40894 1.11054 0.89620 0.91260 1.25678 0.96424 1.03587 0.91209 1.70824 1.36117 1.16813 1.29780 0.84001 0.76623 0.75550 0.76461 1.20515 1.19929 1.20921 1.86504 1.76007 1.42936 1.20558 1.23122 0.75552 0.86296 0.85985 1.90623 1.47107 1.16638 1.84212 1.21400 0.98392 0.90779 0.85677 0.89050 1.22188 0.94819 1.02384 1.03061 1.88083 1.92813 1.32467 1.13466 1.23058 1.00316 0.95834 0.83506 1.22754 0.91542 0.90658 0.92491 0.89205 1.23118 1.01511 0.99727 0.94250 1.23273 0.98165 0.99290 0.98587 1.23428 0.93569 1.01846 0.84356 1.88634 1.36995 1.64550 1.37996 0.92196 0.92095 0.94625 0.91915 0.89740 0.91110 0.91487 0.92702 0.92014 0.90161 0.89508 0.90173 0.89802 0.89649 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 9.14 37.16 0.34 -3.60 16 2 C 0.19 4.97 2.14 -27.88 -0.06 4.91 16 3 H 0.05 1.28 5.66 -51.93 -0.29 0.98 16 4 C -0.60 -17.45 9.25 -34.44 -0.32 -17.77 16 5 H 0.07 2.14 8.04 -52.48 -0.42 1.72 16 6 C 0.04 1.06 5.43 -17.82 -0.10 0.97 16 7 N -0.90 -27.69 13.70 55.43 0.76 -26.94 16 8 Si 1.05 25.97 25.29 -169.99 -4.30 21.67 16 9 H -0.28 -6.47 6.81 56.52 0.38 -6.08 16 10 H -0.27 -6.63 6.36 56.52 0.36 -6.27 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 O -0.34 -8.22 9.86 -39.25 -0.39 -8.61 16 13 C 0.45 9.79 7.26 36.01 0.26 10.05 16 14 O -0.50 -12.50 15.73 -25.46 -0.40 -12.90 16 15 C 0.10 1.56 3.24 -27.89 -0.09 1.47 16 16 H 0.09 1.23 7.79 -51.93 -0.40 0.82 16 17 C -0.17 -2.25 9.50 37.16 0.35 -1.90 16 18 O -0.35 -5.75 9.51 -58.85 -0.56 -6.31 16 19 C 0.05 0.57 5.28 37.16 0.20 0.77 16 20 C 0.08 0.90 3.81 -26.01 -0.10 0.80 16 21 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 22 C -0.15 -1.00 6.54 -24.79 -0.16 -1.16 16 23 C -0.16 -1.00 7.16 -24.48 -0.18 -1.17 16 24 C 0.04 0.41 7.78 38.18 0.30 0.70 16 25 O -0.36 -4.95 11.00 -37.79 -0.42 -5.36 16 26 H 0.06 1.39 4.40 -51.93 -0.23 1.16 16 27 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.27 8.22 8.72 -40.82 -0.36 7.86 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.68 7.87 -51.93 -0.41 0.27 16 33 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 34 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 35 H 0.08 0.47 7.85 -51.93 -0.41 0.06 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 329.59 15.07 4.97 4.97 Total: -1.00 -35.17 329.59 -6.32 -41.49 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.43 Total: -2.08 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 0.45 Total: -5.94 kcal Atomic # 7 Polarization: -27.69 SS G_CDS: 0.76 Total: -26.94 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -1.76 Total: -33.17 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -4.30 Total: 21.67 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.17 -6.32 -41.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.793 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds