Wall clock time and date at job start Mon Mar 30 2020 05:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47804 * 2 1 4 4 C 1.50705 * 109.47195 * 240.00357 * 2 1 3 5 5 H 1.08009 * 119.99989 * 245.37863 * 4 2 1 6 6 C 1.37875 * 119.99990 * 65.37237 * 4 2 1 7 7 N 1.31513 * 119.99848 * 185.17120 * 6 4 2 8 8 Si 1.86798 * 120.00002 * 5.16901 * 6 4 2 9 9 H 1.48501 * 109.46960 * 270.00021 * 8 6 4 10 10 H 1.48504 * 109.46972 * 30.00005 * 8 6 4 11 11 H 1.48497 * 109.46828 * 150.00067 * 8 6 4 12 12 O 1.45199 * 109.47434 * 120.00521 * 2 1 3 13 13 C 1.34228 * 116.99833 * 270.00055 * 12 2 1 14 14 O 1.20826 * 119.99942 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00103 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.47275 * 304.99720 * 15 13 12 17 17 C 1.52996 * 109.47319 * 64.99543 * 15 13 12 18 18 O 1.42900 * 109.47361 * 184.99637 * 15 13 12 19 19 C 1.42903 * 113.99949 * 149.99682 * 18 15 13 20 20 C 1.53004 * 109.46907 * 180.02562 * 19 18 15 21 21 H 1.08998 * 109.82549 * 305.56797 * 20 19 18 22 22 C 1.54379 * 109.83088 * 184.58635 * 20 19 18 23 23 C 1.55305 * 102.25432 * 219.13178 * 22 20 19 24 24 C 1.54941 * 100.94072 * 34.13522 * 23 22 20 25 25 O 1.43242 * 109.83105 * 66.45669 * 20 19 18 26 26 H 1.08995 * 109.46839 * 54.97321 * 1 2 3 27 27 H 1.09001 * 109.47403 * 174.97558 * 1 2 3 28 28 H 1.08999 * 109.46930 * 294.96900 * 1 2 3 29 29 H 0.97002 * 120.00073 * 354.99391 * 7 6 4 30 30 H 1.08995 * 109.47485 * 300.00522 * 17 15 13 31 31 H 1.09006 * 109.47361 * 60.00317 * 17 15 13 32 32 H 1.09001 * 109.47028 * 179.97438 * 17 15 13 33 33 H 1.09003 * 109.47413 * 300.00199 * 19 18 15 34 34 H 1.08993 * 109.47152 * 60.00653 * 19 18 15 35 35 H 1.09005 * 110.84929 * 337.32082 * 22 20 19 36 36 H 1.09005 * 110.84595 * 100.94005 * 22 20 19 37 37 H 1.09001 * 111.12315 * 276.21198 * 23 22 20 38 38 H 1.09007 * 111.12446 * 152.05497 * 23 22 20 39 39 H 1.09006 * 110.31114 * 204.63817 * 24 23 22 40 40 H 1.08998 * 110.39550 * 82.51557 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5797 -1.6364 -1.1339 6 6 1.7930 -0.1782 -2.4797 7 7 2.1412 -0.8471 -3.5572 8 14 0.9742 1.4929 -2.6418 9 1 -0.4990 1.3180 -2.7072 10 1 1.3215 2.3305 -1.4657 11 1 1.4492 2.1587 -3.8813 12 8 2.0140 -0.6846 1.1855 13 6 2.2172 0.0639 2.2811 14 8 1.9982 1.2517 2.2504 15 6 2.7183 -0.5774 3.5494 16 1 2.0556 -1.3964 3.8289 17 6 4.1311 -1.1193 3.3232 18 8 2.7430 0.3942 4.5969 19 6 2.5326 -0.1514 5.9008 20 6 2.5787 0.9728 6.9376 21 1 3.5113 1.5284 6.8393 22 6 2.4675 0.3797 8.3586 23 6 1.5583 1.4136 9.0772 24 6 0.6283 1.8449 7.9154 25 8 1.4656 1.8543 6.7483 26 1 -0.3633 0.5898 -0.8415 27 1 -0.3634 -1.0237 -0.0900 28 1 -0.3633 0.4338 0.9316 29 1 2.6310 -1.6802 -3.4736 30 1 4.1124 -1.8604 2.5241 31 1 4.7940 -0.3004 3.0436 32 1 4.4937 -1.5827 4.2407 33 1 1.5587 -0.6396 5.9377 34 1 3.3129 -0.8802 6.1199 35 1 1.9940 -0.6018 8.3334 36 1 3.4467 0.3272 8.8347 37 1 2.1402 2.2572 9.4486 38 1 0.9909 0.9456 9.8817 39 1 0.2275 2.8413 8.1015 40 1 -0.1837 1.1281 7.7927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113692100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:07 Heat of formation + Delta-G solvation = -209.449693 kcal Electronic energy + Delta-G solvation = -21428.484497 eV Core-core repulsion = 18014.523683 eV Total energy + Delta-G solvation = -3413.960814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.59693 -40.54910 -38.97436 -37.53037 -35.43262 -33.43176 -33.05778 -32.26821 -31.00563 -27.10841 -26.72824 -25.73317 -23.21444 -22.58932 -22.18717 -21.38293 -19.94041 -18.77116 -18.03347 -17.96652 -17.68906 -16.87448 -16.75986 -16.13424 -15.86904 -15.49221 -14.96251 -14.89837 -14.57758 -14.43598 -14.11064 -13.74732 -13.66691 -13.56883 -13.30387 -13.03754 -12.66388 -12.61906 -12.52109 -12.21567 -12.10645 -12.09474 -11.83792 -11.70354 -11.58957 -11.35431 -10.94403 -10.80535 -10.74942 -10.49452 -8.94765 -6.61279 1.15733 1.34580 1.45475 1.49052 1.62995 2.31506 2.70661 2.90226 2.97643 3.54472 3.62736 3.78673 3.82313 3.94622 3.97938 4.15980 4.21853 4.23037 4.36676 4.43507 4.44291 4.52374 4.59809 4.66679 4.69719 4.77219 4.80215 4.89472 4.93965 5.03670 5.12610 5.20112 5.25770 5.38512 5.72732 5.90234 5.93863 6.18435 6.35675 6.83077 7.17169 8.47816 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.035041 B = 0.003738 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.878536 B = 7487.938472 C = 7992.439106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.187 3.813 3 H 0.028 0.972 4 C -0.607 4.607 5 H 0.037 0.963 6 C -0.005 4.005 7 N -0.924 5.924 8 Si 1.078 2.922 9 H -0.247 1.247 10 H -0.269 1.269 11 H -0.275 1.275 12 O -0.351 6.351 13 C 0.442 3.558 14 O -0.537 6.537 15 C 0.105 3.895 16 H 0.124 0.876 17 C -0.161 4.161 18 O -0.382 6.382 19 C 0.042 3.958 20 C 0.073 3.927 21 H 0.080 0.920 22 C -0.138 4.138 23 C -0.147 4.147 24 C 0.033 3.967 25 O -0.409 6.409 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.260 0.740 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.110 0.890 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.202 -0.365 27.728 27.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.133 3.867 3 H 0.046 0.954 4 C -0.644 4.644 5 H 0.056 0.944 6 C -0.205 4.205 7 N -0.559 5.559 8 Si 0.899 3.101 9 H -0.171 1.171 10 H -0.194 1.194 11 H -0.201 1.201 12 O -0.267 6.267 13 C 0.285 3.715 14 O -0.427 6.427 15 C 0.046 3.954 16 H 0.142 0.858 17 C -0.218 4.218 18 O -0.301 6.301 19 C -0.034 4.034 20 C 0.015 3.985 21 H 0.098 0.902 22 C -0.175 4.175 23 C -0.185 4.185 24 C -0.043 4.043 25 O -0.329 6.329 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.101 0.899 38 H 0.125 0.875 39 H 0.105 0.895 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.868 1.350 26.352 26.400 hybrid contribution 0.710 -1.434 0.613 1.714 sum -0.158 -0.085 26.965 26.965 Atomic orbital electron populations 1.22348 0.95931 1.02582 1.00906 1.20856 0.92495 0.93264 0.80111 0.95376 1.22117 1.40667 1.10106 0.91545 0.94423 1.26991 0.96426 1.06225 0.90872 1.70923 1.37405 1.16919 1.30641 0.83599 0.77841 0.71739 0.76882 1.17132 1.19418 1.20114 1.86490 1.76310 1.43123 1.20815 1.24439 0.74171 0.86049 0.86794 1.90594 1.48858 1.18429 1.84808 1.21516 1.00137 0.90693 0.83012 0.85828 1.22191 0.92835 1.01694 1.05092 1.88059 1.93038 1.33819 1.15234 1.23422 1.01890 0.96818 0.81271 1.22969 0.90422 0.90397 0.94672 0.90237 1.23126 1.02877 1.00043 0.91480 1.23267 0.97680 0.99506 0.98021 1.23647 0.93888 1.02321 0.84457 1.88584 1.38285 1.65636 1.40378 0.91647 0.91457 0.93011 0.93094 0.90278 0.92713 0.87102 0.92156 0.88443 0.88712 0.87444 0.89889 0.87454 0.89512 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.39 9.14 71.98 0.66 -6.73 16 2 C 0.19 9.90 2.14 29.85 0.06 9.96 16 3 H 0.03 1.60 5.66 -2.39 -0.01 1.58 16 4 C -0.61 -36.15 9.25 25.60 0.24 -35.92 16 5 H 0.04 2.42 8.04 -2.91 -0.02 2.39 16 6 C -0.01 -0.32 5.43 84.65 0.46 0.14 16 7 N -0.92 -57.64 13.70 21.45 0.29 -57.35 16 8 Si 1.08 51.62 25.29 68.60 1.73 53.35 16 9 H -0.25 -10.55 6.81 99.48 0.68 -9.88 16 10 H -0.27 -12.61 6.36 99.48 0.63 -11.98 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 O -0.35 -16.87 9.86 -51.40 -0.51 -17.38 16 13 C 0.44 19.22 7.26 71.24 0.52 19.74 16 14 O -0.54 -27.30 15.73 28.38 0.45 -26.85 16 15 C 0.11 3.22 3.24 29.85 0.10 3.32 16 16 H 0.12 2.96 7.79 -2.39 -0.02 2.94 16 17 C -0.16 -4.02 9.50 71.98 0.68 -3.34 16 18 O -0.38 -12.07 9.51 -126.40 -1.20 -13.27 16 19 C 0.04 0.85 5.28 71.98 0.38 1.23 16 20 C 0.07 1.45 3.81 31.06 0.12 1.57 16 21 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 22 C -0.14 -1.41 6.54 31.85 0.21 -1.21 16 23 C -0.15 -1.50 7.16 32.05 0.23 -1.27 16 24 C 0.03 0.56 7.78 72.65 0.56 1.13 16 25 O -0.41 -11.03 11.00 -146.53 -1.61 -12.64 16 26 H 0.06 2.91 4.40 -2.39 -0.01 2.90 16 27 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 28 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.26 16.27 8.72 -92.71 -0.81 15.46 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.11 1.80 7.87 -2.39 -0.02 1.78 16 33 H 0.06 1.15 8.09 -2.39 -0.02 1.13 16 34 H 0.10 1.26 7.87 -2.39 -0.02 1.24 16 35 H 0.09 0.72 7.85 -2.38 -0.02 0.70 16 36 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -78.88 329.59 4.24 -74.64 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.87 Total: 10.87 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 4.22 Total: -11.37 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.29 Total: -57.35 kcal Atomic # 8 Polarization: -67.27 SS G_CDS: -2.87 Total: -70.15 kcal Atomic # 14 Polarization: 51.62 SS G_CDS: 1.73 Total: 53.35 kcal Total: -78.88 4.24 -74.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.810 kcal (2) G-P(sol) polarization free energy of solvation -78.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds