Wall clock time and date at job start Mon Mar 30 2020 05:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46909 * 2 1 4 4 C 1.50702 * 109.47196 * 239.99765 * 2 1 3 5 5 H 1.07998 * 120.00345 * 245.62841 * 4 2 1 6 6 C 1.37884 * 119.99806 * 65.62729 * 4 2 1 7 7 N 1.31513 * 119.99636 * 197.51386 * 6 4 2 8 8 Si 1.86801 * 119.99762 * 17.51860 * 6 4 2 9 9 H 1.48501 * 109.46841 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47067 * 299.99487 * 8 6 4 11 11 H 1.48500 * 109.47376 * 59.99990 * 8 6 4 12 12 O 1.45201 * 109.47095 * 120.00009 * 2 1 3 13 13 C 1.34231 * 116.99999 * 270.00007 * 12 2 1 14 14 O 1.20832 * 119.99734 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00122 * 180.02562 * 13 12 2 16 16 H 1.08998 * 109.47067 * 60.00083 * 15 13 12 17 17 C 1.53002 * 109.46876 * 300.00000 * 15 13 12 18 18 O 1.42905 * 109.47087 * 179.97438 * 15 13 12 19 19 C 1.42893 * 113.99788 * 209.99957 * 18 15 13 20 20 C 1.53000 * 109.47064 * 180.02562 * 19 18 15 21 21 H 1.09001 * 109.82761 * 305.56584 * 20 19 18 22 22 C 1.54381 * 109.83451 * 184.58905 * 20 19 18 23 23 C 1.55308 * 102.25506 * 219.13083 * 22 20 19 24 24 C 1.54950 * 100.94077 * 34.12838 * 23 22 20 25 25 O 1.43240 * 109.82922 * 66.45501 * 20 19 18 26 26 H 1.09003 * 109.46856 * 186.33851 * 1 2 3 27 27 H 1.08998 * 109.47315 * 306.33917 * 1 2 3 28 28 H 1.09001 * 109.46632 * 66.33979 * 1 2 3 29 29 H 0.96994 * 120.00108 * 354.88055 * 7 6 4 30 30 H 1.08998 * 109.46965 * 60.00438 * 17 15 13 31 31 H 1.09007 * 109.46460 * 180.02562 * 17 15 13 32 32 H 1.08998 * 109.47340 * 299.99916 * 17 15 13 33 33 H 1.09002 * 109.47403 * 300.00077 * 19 18 15 34 34 H 1.08999 * 109.47157 * 60.00198 * 19 18 15 35 35 H 1.09011 * 110.84434 * 337.31711 * 22 20 19 36 36 H 1.08994 * 110.85329 * 100.93904 * 22 20 19 37 37 H 1.08999 * 111.12489 * 276.21329 * 23 22 20 38 38 H 1.08996 * 111.12377 * 152.04590 * 23 22 20 39 39 H 1.08994 * 110.30828 * 204.64011 * 24 23 22 40 40 H 1.09007 * 110.38902 * 82.51445 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5763 -1.6385 -1.1340 6 6 1.7976 -0.1756 -2.4795 7 7 1.9161 -0.9296 -3.5504 8 14 1.3113 1.6199 -2.6502 9 1 1.1182 1.9459 -4.0861 10 1 0.0454 1.8622 -1.9125 11 1 2.3842 2.4790 -2.0880 12 8 2.0140 -0.6845 1.1856 13 6 2.2172 0.0640 2.2811 14 8 1.9982 1.2519 2.2503 15 6 2.7193 -0.5770 3.5492 16 1 3.6884 -1.0399 3.3632 17 6 1.7243 -1.6441 4.0098 18 8 2.8548 0.4189 4.5650 19 6 3.8869 0.1441 5.5143 20 6 3.9407 1.2696 6.5493 21 1 4.0517 2.2299 6.0458 22 6 5.1264 1.0405 7.5111 23 6 4.5286 1.4686 8.8792 24 6 3.0562 1.0159 8.7113 25 8 2.7414 1.2673 7.3325 26 1 -0.3633 -1.0214 0.1135 27 1 -0.3634 0.6089 0.8278 28 1 -0.3633 0.4124 -0.9413 29 1 2.2402 -1.8402 -3.4690 30 1 1.6215 -2.4036 3.2348 31 1 2.0874 -2.1074 4.9273 32 1 0.7552 -1.1812 4.1958 33 1 3.6771 -0.8006 6.0160 34 1 4.8454 0.0771 4.9997 35 1 5.4162 -0.0103 7.5262 36 1 5.9720 1.6734 7.2423 37 1 4.5945 2.5479 9.0162 38 1 5.0108 0.9398 9.7013 39 1 2.4044 1.6001 9.3608 40 1 2.9577 -0.0465 8.9342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113692104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:09 Heat of formation + Delta-G solvation = -185.912128 kcal Electronic energy + Delta-G solvation = -21367.284638 eV Core-core repulsion = 17954.344489 eV Total energy + Delta-G solvation = -3412.940148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.02685 -39.61839 -37.71771 -35.68334 -33.28876 -32.54060 -32.00914 -30.49200 -29.94321 -25.88255 -24.97933 -24.35429 -22.12148 -21.44106 -21.30277 -19.55279 -17.78885 -17.49448 -17.09901 -16.63457 -16.05613 -15.78788 -15.47657 -14.83626 -14.62812 -14.00388 -13.72290 -13.48820 -13.19242 -12.83584 -12.61020 -12.47586 -12.22546 -12.17285 -12.04167 -11.68218 -11.61759 -11.50048 -11.46788 -11.27604 -11.10507 -10.53905 -10.08226 -9.98697 -9.85528 -9.71332 -9.69749 -9.41267 -8.94376 -8.34316 -6.64121 -4.24214 2.82569 2.93333 3.34653 3.41678 3.55564 3.57870 3.97448 4.11468 4.37650 4.47986 4.61432 4.81759 4.88788 4.94993 4.97738 5.11290 5.12860 5.19844 5.26873 5.33611 5.37030 5.40469 5.47374 5.60544 5.72300 5.77523 5.86694 6.18842 6.23880 6.48809 6.50736 6.72602 6.79465 7.08639 7.18015 7.39301 7.82961 8.24805 8.52179 8.84579 9.43378 10.78940 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.039081 B = 0.003506 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.283908 B = 7985.134478 C = 8139.187003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.196 3.804 3 H 0.038 0.962 4 C -0.607 4.607 5 H 0.068 0.932 6 C 0.040 3.960 7 N -0.893 5.893 8 Si 1.038 2.962 9 H -0.279 1.279 10 H -0.271 1.271 11 H -0.278 1.278 12 O -0.343 6.343 13 C 0.451 3.549 14 O -0.502 6.502 15 C 0.096 3.904 16 H 0.093 0.907 17 C -0.165 4.165 18 O -0.350 6.350 19 C 0.050 3.950 20 C 0.083 3.917 21 H 0.092 0.908 22 C -0.149 4.149 23 C -0.156 4.156 24 C 0.045 3.955 25 O -0.365 6.365 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.271 0.729 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.622 0.967 23.810 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.142 3.858 3 H 0.055 0.945 4 C -0.645 4.645 5 H 0.087 0.913 6 C -0.167 4.167 7 N -0.527 5.527 8 Si 0.865 3.135 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.204 1.204 12 O -0.259 6.259 13 C 0.292 3.708 14 O -0.390 6.390 15 C 0.037 3.963 16 H 0.111 0.889 17 C -0.223 4.223 18 O -0.268 6.268 19 C -0.027 4.027 20 C 0.025 3.975 21 H 0.110 0.890 22 C -0.186 4.186 23 C -0.193 4.193 24 C -0.031 4.031 25 O -0.284 6.284 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.761 2.652 22.540 23.190 hybrid contribution 0.884 -1.426 1.173 2.047 sum 5.646 1.226 23.713 24.407 Atomic orbital electron populations 1.22567 0.97933 1.01103 1.01056 1.20901 0.91054 0.94047 0.79785 0.94458 1.21920 1.41987 1.10958 0.89640 0.91335 1.25676 0.94465 1.05210 0.91315 1.70871 1.40764 1.10036 1.30980 0.84146 0.77738 0.75024 0.76628 1.20406 1.19678 1.20408 1.86525 1.75967 1.42892 1.20498 1.23137 0.75718 0.86147 0.85811 1.90607 1.47374 1.16728 1.84313 1.21411 1.00404 0.88874 0.85626 0.88910 1.22168 0.99770 0.98068 1.02263 1.88075 1.54840 1.45535 1.38400 1.23052 0.90921 0.98222 0.90465 1.22768 0.84495 0.98997 0.91192 0.89049 1.23118 0.98143 1.02981 0.94384 1.23271 0.96088 1.02447 0.97524 1.23417 0.95347 1.00249 0.84114 1.88590 1.29425 1.92779 1.17636 0.92632 0.94958 0.90934 0.91851 0.89870 0.91516 0.91204 0.92624 0.92023 0.90149 0.89440 0.90154 0.89804 0.89711 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 9.22 37.16 0.34 -3.68 16 2 C 0.20 5.12 2.14 -27.88 -0.06 5.06 16 3 H 0.04 1.02 5.81 -51.93 -0.30 0.72 16 4 C -0.61 -17.64 9.16 -34.44 -0.32 -17.95 16 5 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 6 C 0.04 1.15 5.29 -17.82 -0.09 1.05 16 7 N -0.89 -27.13 13.70 55.43 0.76 -26.37 16 8 Si 1.04 25.46 26.29 -169.99 -4.47 20.99 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.27 -6.19 5.76 56.52 0.33 -5.86 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 O -0.34 -8.15 9.77 -39.26 -0.38 -8.54 16 13 C 0.45 9.72 7.31 36.00 0.26 9.99 16 14 O -0.50 -12.36 15.72 -25.48 -0.40 -12.76 16 15 C 0.10 1.55 3.24 -27.88 -0.09 1.46 16 16 H 0.09 1.26 7.78 -51.93 -0.40 0.85 16 17 C -0.17 -2.24 9.46 37.16 0.35 -1.89 16 18 O -0.35 -5.77 9.51 -58.89 -0.56 -6.33 16 19 C 0.05 0.59 5.28 37.16 0.20 0.78 16 20 C 0.08 0.91 3.81 -26.01 -0.10 0.81 16 21 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 22 C -0.15 -1.04 6.54 -24.78 -0.16 -1.20 16 23 C -0.16 -0.97 7.16 -24.48 -0.18 -1.15 16 24 C 0.05 0.38 7.78 38.19 0.30 0.67 16 25 O -0.37 -4.65 11.00 -37.80 -0.42 -5.07 16 26 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.73 4.88 -51.93 -0.25 1.47 16 29 H 0.27 8.15 8.73 -40.82 -0.36 7.80 16 30 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 31 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 34 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 35 H 0.08 0.47 7.85 -51.92 -0.41 0.07 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 LS Contribution 330.67 15.07 4.98 4.98 Total: -1.00 -34.43 330.67 -6.51 -40.95 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.48 Total: -1.82 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 0.45 Total: -6.04 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.76 Total: -26.37 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -1.76 Total: -32.69 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -4.47 Total: 20.99 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.43 -6.51 -40.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.965 kcal (2) G-P(sol) polarization free energy of solvation -34.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds