Wall clock time and date at job start Mon Mar 30 2020 05:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46909 * 2 1 4 4 C 1.50702 * 109.47196 * 239.99765 * 2 1 3 5 5 H 1.07998 * 120.00345 * 245.62841 * 4 2 1 6 6 C 1.37884 * 119.99806 * 65.62729 * 4 2 1 7 7 N 1.31513 * 119.99636 * 197.51386 * 6 4 2 8 8 Si 1.86801 * 119.99762 * 17.51860 * 6 4 2 9 9 H 1.48501 * 109.46841 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47067 * 299.99487 * 8 6 4 11 11 H 1.48500 * 109.47376 * 59.99990 * 8 6 4 12 12 O 1.45201 * 109.47095 * 120.00009 * 2 1 3 13 13 C 1.34231 * 116.99999 * 270.00007 * 12 2 1 14 14 O 1.20832 * 119.99734 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00122 * 180.02562 * 13 12 2 16 16 H 1.08998 * 109.47067 * 60.00083 * 15 13 12 17 17 C 1.53002 * 109.46876 * 300.00000 * 15 13 12 18 18 O 1.42905 * 109.47087 * 179.97438 * 15 13 12 19 19 C 1.42893 * 113.99788 * 209.99957 * 18 15 13 20 20 C 1.53000 * 109.47064 * 180.02562 * 19 18 15 21 21 H 1.09001 * 109.82761 * 305.56584 * 20 19 18 22 22 C 1.54381 * 109.83451 * 184.58905 * 20 19 18 23 23 C 1.55308 * 102.25506 * 219.13083 * 22 20 19 24 24 C 1.54950 * 100.94077 * 34.12838 * 23 22 20 25 25 O 1.43240 * 109.82922 * 66.45501 * 20 19 18 26 26 H 1.09003 * 109.46856 * 186.33851 * 1 2 3 27 27 H 1.08998 * 109.47315 * 306.33917 * 1 2 3 28 28 H 1.09001 * 109.46632 * 66.33979 * 1 2 3 29 29 H 0.96994 * 120.00108 * 354.88055 * 7 6 4 30 30 H 1.08998 * 109.46965 * 60.00438 * 17 15 13 31 31 H 1.09007 * 109.46460 * 180.02562 * 17 15 13 32 32 H 1.08998 * 109.47340 * 299.99916 * 17 15 13 33 33 H 1.09002 * 109.47403 * 300.00077 * 19 18 15 34 34 H 1.08999 * 109.47157 * 60.00198 * 19 18 15 35 35 H 1.09011 * 110.84434 * 337.31711 * 22 20 19 36 36 H 1.08994 * 110.85329 * 100.93904 * 22 20 19 37 37 H 1.08999 * 111.12489 * 276.21329 * 23 22 20 38 38 H 1.08996 * 111.12377 * 152.04590 * 23 22 20 39 39 H 1.08994 * 110.30828 * 204.64011 * 24 23 22 40 40 H 1.09007 * 110.38902 * 82.51445 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5763 -1.6385 -1.1340 6 6 1.7976 -0.1756 -2.4795 7 7 1.9161 -0.9296 -3.5504 8 14 1.3113 1.6199 -2.6502 9 1 1.1182 1.9459 -4.0861 10 1 0.0454 1.8622 -1.9125 11 1 2.3842 2.4790 -2.0880 12 8 2.0140 -0.6845 1.1856 13 6 2.2172 0.0640 2.2811 14 8 1.9982 1.2519 2.2503 15 6 2.7193 -0.5770 3.5492 16 1 3.6884 -1.0399 3.3632 17 6 1.7243 -1.6441 4.0098 18 8 2.8548 0.4189 4.5650 19 6 3.8869 0.1441 5.5143 20 6 3.9407 1.2696 6.5493 21 1 4.0517 2.2299 6.0458 22 6 5.1264 1.0405 7.5111 23 6 4.5286 1.4686 8.8792 24 6 3.0562 1.0159 8.7113 25 8 2.7414 1.2673 7.3325 26 1 -0.3633 -1.0214 0.1135 27 1 -0.3634 0.6089 0.8278 28 1 -0.3633 0.4124 -0.9413 29 1 2.2402 -1.8402 -3.4690 30 1 1.6215 -2.4036 3.2348 31 1 2.0874 -2.1074 4.9273 32 1 0.7552 -1.1812 4.1958 33 1 3.6771 -0.8006 6.0160 34 1 4.8454 0.0771 4.9997 35 1 5.4162 -0.0103 7.5262 36 1 5.9720 1.6734 7.2423 37 1 4.5945 2.5479 9.0162 38 1 5.0108 0.9398 9.7013 39 1 2.4044 1.6001 9.3608 40 1 2.9577 -0.0465 8.9342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113692104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:09 Heat of formation + Delta-G solvation = -208.904445 kcal Electronic energy + Delta-G solvation = -21368.281659 eV Core-core repulsion = 17954.344489 eV Total energy + Delta-G solvation = -3413.937170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.59073 -40.54984 -38.96394 -37.51698 -35.42136 -33.43525 -33.04151 -32.22219 -30.99802 -27.07128 -26.73739 -25.72157 -23.24066 -22.57532 -22.18743 -21.33695 -19.91517 -18.82849 -18.26088 -17.82711 -17.34136 -17.01319 -16.81532 -16.04037 -15.83362 -15.51668 -14.96898 -14.92725 -14.59491 -14.34956 -14.11364 -13.85630 -13.59166 -13.48764 -13.24056 -13.12838 -12.65996 -12.56459 -12.47662 -12.22069 -12.11559 -12.10058 -11.78151 -11.71553 -11.66493 -11.34627 -11.07947 -10.75453 -10.57760 -10.49719 -8.96300 -6.58090 1.15445 1.38922 1.44978 1.48628 1.66631 2.33141 2.71234 2.88068 2.95466 3.54483 3.62788 3.78510 3.86745 3.93513 3.94648 4.15822 4.22199 4.23378 4.37665 4.42270 4.50150 4.57203 4.60219 4.68640 4.71412 4.81194 4.82537 4.89736 4.94221 5.03614 5.12725 5.25237 5.25591 5.40359 5.76595 5.90787 5.93396 6.16593 6.37551 6.83266 7.18490 8.46415 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.039081 B = 0.003506 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.283908 B = 7985.134478 C = 8139.187003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.194 3.806 3 H 0.027 0.973 4 C -0.618 4.618 5 H 0.036 0.964 6 C 0.000 4.000 7 N -0.916 5.916 8 Si 1.070 2.930 9 H -0.270 1.270 10 H -0.243 1.243 11 H -0.271 1.271 12 O -0.350 6.350 13 C 0.444 3.556 14 O -0.537 6.537 15 C 0.103 3.897 16 H 0.123 0.877 17 C -0.158 4.158 18 O -0.381 6.381 19 C 0.042 3.958 20 C 0.075 3.925 21 H 0.070 0.930 22 C -0.140 4.140 23 C -0.148 4.148 24 C 0.035 3.965 25 O -0.403 6.403 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.260 0.740 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.111 1.058 25.995 26.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.140 3.860 3 H 0.045 0.955 4 C -0.655 4.655 5 H 0.054 0.946 6 C -0.201 4.201 7 N -0.550 5.550 8 Si 0.891 3.109 9 H -0.195 1.195 10 H -0.167 1.167 11 H -0.196 1.196 12 O -0.267 6.267 13 C 0.288 3.712 14 O -0.427 6.427 15 C 0.045 3.955 16 H 0.140 0.860 17 C -0.216 4.216 18 O -0.301 6.301 19 C -0.033 4.033 20 C 0.018 3.982 21 H 0.088 0.912 22 C -0.178 4.178 23 C -0.186 4.186 24 C -0.041 4.041 25 O -0.323 6.323 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.107 0.893 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.259 2.714 24.760 25.458 hybrid contribution 0.797 -1.500 0.594 1.800 sum 6.056 1.214 25.354 26.096 Atomic orbital electron populations 1.22452 0.95975 1.01884 1.01666 1.20684 0.92456 0.92980 0.79916 0.95533 1.22030 1.41869 1.10013 0.91588 0.94568 1.26964 0.93863 1.08349 0.90937 1.70973 1.42343 1.09814 1.31825 0.83748 0.79049 0.70587 0.77559 1.19485 1.16733 1.19621 1.86509 1.76284 1.43123 1.20761 1.24358 0.74493 0.85890 0.86485 1.90580 1.48993 1.18343 1.84800 1.21530 1.02148 0.88709 0.83157 0.85975 1.22158 0.98555 0.97072 1.03779 1.88050 1.56740 1.46298 1.38994 1.23387 0.90562 0.99461 0.89929 1.22877 0.85758 0.97851 0.91739 0.91174 1.23127 0.96817 1.04377 0.93445 1.23272 0.94606 1.02770 0.97936 1.23655 0.96983 1.01123 0.82321 1.88547 1.30970 1.93004 1.19786 0.92023 0.93469 0.90902 0.93032 0.89827 0.88042 0.92498 0.90611 0.90131 0.88466 0.88191 0.90191 0.87345 0.89277 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.54 9.22 71.98 0.66 -6.88 16 2 C 0.19 10.13 2.14 29.85 0.06 10.20 16 3 H 0.03 1.46 5.81 -2.39 -0.01 1.44 16 4 C -0.62 -36.45 9.16 25.60 0.23 -36.22 16 5 H 0.04 2.31 8.06 -2.91 -0.02 2.28 16 6 C 0.00 -0.01 5.29 84.66 0.45 0.44 16 7 N -0.92 -56.36 13.70 21.45 0.29 -56.07 16 8 Si 1.07 50.54 26.29 68.60 1.80 52.35 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 10 H -0.24 -10.35 5.76 99.48 0.57 -9.78 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 O -0.35 -16.66 9.77 -51.43 -0.50 -17.16 16 13 C 0.44 18.99 7.31 71.23 0.52 19.51 16 14 O -0.54 -26.51 15.72 28.38 0.45 -26.07 16 15 C 0.10 3.17 3.24 29.85 0.10 3.27 16 16 H 0.12 2.99 7.78 -2.39 -0.02 2.98 16 17 C -0.16 -3.96 9.46 71.98 0.68 -3.28 16 18 O -0.38 -12.13 9.51 -126.36 -1.20 -13.33 16 19 C 0.04 0.90 5.28 71.98 0.38 1.28 16 20 C 0.08 1.55 3.81 31.06 0.12 1.66 16 21 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 22 C -0.14 -1.57 6.54 31.86 0.21 -1.36 16 23 C -0.15 -1.46 7.16 32.05 0.23 -1.23 16 24 C 0.04 0.52 7.78 72.65 0.56 1.09 16 25 O -0.40 -9.95 11.00 -146.52 -1.61 -11.56 16 26 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.07 3.35 4.88 -2.39 -0.01 3.33 16 29 H 0.26 16.11 8.73 -92.71 -0.81 15.30 16 30 H 0.08 2.08 8.11 -2.39 -0.02 2.06 16 31 H 0.10 1.83 7.87 -2.38 -0.02 1.81 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.08 1.28 7.87 -2.39 -0.02 1.26 16 34 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 35 H 0.10 0.78 7.85 -2.38 -0.02 0.76 16 36 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 40 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -76.07 330.67 4.28 -71.79 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.84 Total: 11.57 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 4.21 Total: -11.53 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.29 Total: -56.07 kcal Atomic # 8 Polarization: -65.24 SS G_CDS: -2.87 Total: -68.11 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 1.80 Total: 52.35 kcal Total: -76.07 4.28 -71.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.110 kcal (2) G-P(sol) polarization free energy of solvation -76.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds