Wall clock time and date at job start Mon Mar 30 2020 05:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46817 * 2 1 4 4 N 1.46495 * 109.46951 * 120.00046 * 2 1 3 5 5 C 1.46501 * 119.99968 * 119.59154 * 4 2 1 6 6 C 1.50700 * 109.47181 * 269.99756 * 5 4 2 7 7 H 1.07998 * 119.99886 * 0.02562 * 6 5 4 8 8 C 1.37870 * 119.99876 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00522 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99779 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47156 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47233 * 120.00138 * 10 8 6 13 13 H 1.48507 * 109.46852 * 239.99823 * 10 8 6 14 14 C 1.34781 * 119.99999 * 299.58680 * 4 2 1 15 15 O 1.21276 * 120.00183 * 4.89691 * 14 4 2 16 16 C 1.50699 * 120.00025 * 184.89367 * 14 4 2 17 17 H 1.09004 * 109.34281 * 325.67358 * 16 14 4 18 18 C 1.53251 * 109.40679 * 85.47171 * 16 14 4 19 19 S 1.81895 * 108.50522 * 182.12341 * 18 16 14 20 20 C 1.81895 * 101.91663 * 308.69404 * 19 18 16 21 21 C 1.53249 * 108.50294 * 51.30593 * 20 19 18 22 22 N 1.46469 * 109.40701 * 205.87121 * 16 14 4 23 23 H 1.09001 * 109.47192 * 298.54397 * 1 2 3 24 24 H 1.09000 * 109.46915 * 58.54716 * 1 2 3 25 25 H 1.09002 * 109.46658 * 178.54469 * 1 2 3 26 26 H 1.08992 * 109.46979 * 240.00164 * 2 1 3 27 27 H 1.08995 * 109.47049 * 182.83722 * 3 2 1 28 28 H 1.09004 * 109.47362 * 302.83646 * 3 2 1 29 29 H 1.09002 * 109.47069 * 62.83513 * 3 2 1 30 30 H 1.08996 * 109.46851 * 29.99989 * 5 4 2 31 31 H 1.09004 * 109.46842 * 149.99763 * 5 4 2 32 32 H 0.96999 * 120.00084 * 180.02562 * 9 8 6 33 33 H 1.08996 * 109.63002 * 62.41702 * 18 16 14 34 34 H 1.09001 * 109.62873 * 301.82746 * 18 16 14 35 35 H 1.08997 * 109.63281 * 171.01077 * 20 19 18 36 36 H 1.09005 * 109.63232 * 291.60625 * 20 19 18 37 37 H 1.09004 * 109.40698 * 177.87817 * 21 20 19 38 38 H 1.09006 * 109.34259 * 58.07692 * 21 20 19 39 39 H 1.00899 * 110.99687 * 292.33055 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8532 -1.8869 1.0617 6 6 1.9746 -3.1107 1.0215 7 1 0.9017 -3.0076 1.0889 8 6 2.5406 -4.3619 0.8988 9 7 3.8472 -4.4875 0.8172 10 14 1.4515 -5.8787 0.8482 11 1 0.0280 -5.4699 0.9575 12 1 1.6635 -6.5978 -0.4336 13 1 1.7972 -6.7743 1.9812 14 6 1.6996 -0.2253 2.4203 15 8 0.9371 0.7109 2.5335 16 6 2.2907 -0.8684 3.6483 17 1 2.4086 -1.9380 3.4744 18 6 3.6604 -0.2460 3.9398 19 16 4.3784 -1.0824 5.3867 20 6 3.0236 -0.9714 6.5954 21 6 1.7416 -1.4940 5.9382 22 7 1.3951 -0.6564 4.7876 23 1 -0.3633 0.4911 0.9028 24 1 -0.3633 0.5362 -0.8767 25 1 -0.3633 -1.0274 -0.0261 26 1 1.8934 -0.5138 -0.8899 27 1 3.1288 1.4430 -0.0509 28 1 1.6357 1.9709 -0.8635 29 1 1.7187 1.9415 0.9143 30 1 3.4317 -1.8245 0.1401 31 1 3.5313 -1.9542 1.9126 32 1 4.2453 -5.3678 0.7305 33 1 3.5421 0.8165 4.1524 34 1 4.3142 -0.3794 3.0779 35 1 3.2613 -1.5788 7.4687 36 1 2.8843 0.0673 6.8950 37 1 0.9273 -1.4693 6.6624 38 1 1.8990 -2.5199 5.6050 39 1 1.3637 0.3183 5.0464 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126709849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:45 Heat of formation + Delta-G solvation = -36.260117 kcal Electronic energy + Delta-G solvation = -20318.253136 eV Core-core repulsion = 17386.848008 eV Total energy + Delta-G solvation = -2931.405128 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.71398 -37.00846 -35.24203 -33.27538 -32.10183 -30.73553 -28.23093 -27.00042 -26.61493 -24.27589 -22.81498 -22.43431 -20.91786 -18.49758 -16.98331 -16.41861 -15.89782 -15.68660 -14.78493 -14.54859 -14.46792 -14.33333 -14.12673 -13.73620 -13.27813 -13.03900 -12.92632 -12.52683 -12.28473 -11.87842 -11.67873 -11.50879 -11.45761 -11.16632 -11.14634 -10.94072 -10.88874 -10.66746 -10.36569 -10.08122 -9.94389 -9.68341 -8.89607 -8.56940 -8.38532 -7.71629 -7.45527 -6.17740 -4.25149 1.78396 2.51744 3.22681 3.28036 3.32054 3.38255 3.77901 4.31978 4.45663 4.80788 4.99649 5.08115 5.15468 5.21401 5.27503 5.41276 5.57294 5.63981 5.69342 5.75539 5.85561 5.96132 6.10214 6.13844 6.20364 6.33542 6.45296 6.71455 6.78221 6.87678 7.03742 7.17565 7.49434 7.59370 7.77894 8.05014 8.33760 8.80746 9.01216 9.43290 10.88724 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.008878 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.392916 B = 3153.083411 C = 4463.615391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 C -0.166 4.166 4 N -0.589 5.589 5 C 0.233 3.767 6 C -0.537 4.537 7 H 0.063 0.937 8 C 0.066 3.934 9 N -0.889 5.889 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.534 3.466 15 O -0.558 6.558 16 C 0.071 3.929 17 H 0.133 0.867 18 C -0.104 4.104 19 S -0.254 6.254 20 C -0.126 4.126 21 C 0.061 3.939 22 N -0.670 5.670 23 H 0.076 0.924 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.875 7.478 6.078 9.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 C -0.224 4.224 4 N -0.320 5.320 5 C 0.114 3.886 6 C -0.575 4.575 7 H 0.081 0.919 8 C -0.137 4.137 9 N -0.527 5.527 10 Si 0.722 3.278 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.319 3.681 15 O -0.438 6.438 16 C -0.044 4.044 17 H 0.151 0.849 18 C -0.254 4.254 19 S -0.027 6.027 20 C -0.276 4.276 21 C -0.070 4.070 22 N -0.300 5.300 23 H 0.095 0.905 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.539 6.908 5.992 9.160 hybrid contribution -0.669 -0.113 0.051 0.680 sum -1.208 6.794 6.042 9.172 Atomic orbital electron populations 1.22182 0.95600 1.02181 1.02383 1.20829 0.94376 0.92111 0.88151 1.22186 1.00460 0.97004 1.02735 1.48281 1.50885 1.28803 1.04038 1.19534 0.89990 0.80699 0.98422 1.21524 0.93864 0.90660 1.51492 0.91916 1.24929 0.95010 0.99050 0.94715 1.69927 1.09458 1.24101 1.49232 0.86490 0.80892 0.82705 0.77726 1.19624 1.20908 1.20798 1.19941 0.80960 0.82905 0.84254 1.90512 1.36460 1.30151 1.86687 1.21827 0.88263 1.03880 0.90440 0.84888 1.24109 1.00719 1.01359 0.99230 1.87060 1.25353 1.78561 1.11708 1.24314 0.98119 1.04888 1.00302 1.22262 0.94026 0.98723 0.92019 1.59582 1.52349 1.12019 1.06063 0.90478 0.93207 0.92519 0.89870 0.93242 0.92531 0.90978 0.94653 0.94346 0.92572 0.89838 0.86556 0.87362 0.90067 0.89436 0.89140 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 9.15 37.16 0.34 -2.61 16 2 C 0.15 2.73 3.28 -67.93 -0.22 2.51 16 3 C -0.17 -2.64 9.16 37.16 0.34 -2.30 16 4 N -0.59 -12.00 2.41 -167.47 -0.40 -12.40 16 5 C 0.23 5.39 4.76 -5.19 -0.02 5.37 16 6 C -0.54 -13.80 9.09 -34.44 -0.31 -14.11 16 7 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 8 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -24.25 13.29 55.43 0.74 -23.52 16 10 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 14 C 0.53 10.64 6.27 -10.98 -0.07 10.57 16 15 O -0.56 -11.67 12.68 5.56 0.07 -11.60 16 16 C 0.07 1.27 1.85 -68.97 -0.13 1.14 16 17 H 0.13 2.79 6.18 -51.93 -0.32 2.47 16 18 C -0.10 -1.66 5.64 37.29 0.21 -1.45 16 19 S -0.25 -3.88 22.39 -107.50 -2.41 -6.29 16 20 C -0.13 -1.50 6.59 37.29 0.25 -1.26 16 21 C 0.06 0.80 6.42 -3.93 -0.03 0.78 16 22 N -0.67 -10.69 6.01 -108.29 -0.65 -11.35 16 23 H 0.08 1.50 6.00 -51.93 -0.31 1.19 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.08 1.52 7.79 -51.93 -0.40 1.11 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.25 6.24 -51.93 -0.32 0.93 16 30 H 0.04 0.86 7.92 -51.93 -0.41 0.45 16 31 H 0.04 0.91 5.41 -51.93 -0.28 0.63 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.12 1.96 7.32 -51.93 -0.38 1.58 16 35 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.09 1.33 7.91 -51.93 -0.41 0.92 16 39 H 0.35 5.21 8.43 -39.29 -0.33 4.88 16 LS Contribution 319.73 15.07 4.82 4.82 Total: -1.00 -27.66 319.73 -8.70 -36.36 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.10 Total: 8.10 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 0.26 Total: 0.28 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.32 Total: -47.27 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.07 Total: -11.60 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: -3.88 SS G_CDS: -2.41 Total: -6.29 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.66 -8.70 -36.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126709849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.100 kcal (2) G-P(sol) polarization free energy of solvation -27.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds