Wall clock time and date at job start Mon Mar 30 2020 05:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46817 * 2 1 4 4 N 1.46495 * 109.46951 * 120.00046 * 2 1 3 5 5 C 1.46501 * 119.99968 * 119.59154 * 4 2 1 6 6 C 1.50700 * 109.47181 * 269.99756 * 5 4 2 7 7 H 1.07998 * 119.99886 * 0.02562 * 6 5 4 8 8 C 1.37870 * 119.99876 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00522 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99779 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47156 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47233 * 120.00138 * 10 8 6 13 13 H 1.48507 * 109.46852 * 239.99823 * 10 8 6 14 14 C 1.34781 * 119.99999 * 299.58680 * 4 2 1 15 15 O 1.21276 * 120.00183 * 4.89691 * 14 4 2 16 16 C 1.50699 * 120.00025 * 184.89367 * 14 4 2 17 17 H 1.09004 * 109.34281 * 325.67358 * 16 14 4 18 18 C 1.53251 * 109.40679 * 85.47171 * 16 14 4 19 19 S 1.81895 * 108.50522 * 182.12341 * 18 16 14 20 20 C 1.81895 * 101.91663 * 308.69404 * 19 18 16 21 21 C 1.53249 * 108.50294 * 51.30593 * 20 19 18 22 22 N 1.46469 * 109.40701 * 205.87121 * 16 14 4 23 23 H 1.09001 * 109.47192 * 298.54397 * 1 2 3 24 24 H 1.09000 * 109.46915 * 58.54716 * 1 2 3 25 25 H 1.09002 * 109.46658 * 178.54469 * 1 2 3 26 26 H 1.08992 * 109.46979 * 240.00164 * 2 1 3 27 27 H 1.08995 * 109.47049 * 182.83722 * 3 2 1 28 28 H 1.09004 * 109.47362 * 302.83646 * 3 2 1 29 29 H 1.09002 * 109.47069 * 62.83513 * 3 2 1 30 30 H 1.08996 * 109.46851 * 29.99989 * 5 4 2 31 31 H 1.09004 * 109.46842 * 149.99763 * 5 4 2 32 32 H 0.96999 * 120.00084 * 180.02562 * 9 8 6 33 33 H 1.08996 * 109.63002 * 62.41702 * 18 16 14 34 34 H 1.09001 * 109.62873 * 301.82746 * 18 16 14 35 35 H 1.08997 * 109.63281 * 171.01077 * 20 19 18 36 36 H 1.09005 * 109.63232 * 291.60625 * 20 19 18 37 37 H 1.09004 * 109.40698 * 177.87817 * 21 20 19 38 38 H 1.09006 * 109.34259 * 58.07692 * 21 20 19 39 39 H 1.00899 * 110.99687 * 292.33055 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8532 -1.8869 1.0617 6 6 1.9746 -3.1107 1.0215 7 1 0.9017 -3.0076 1.0889 8 6 2.5406 -4.3619 0.8988 9 7 3.8472 -4.4875 0.8172 10 14 1.4515 -5.8787 0.8482 11 1 0.0280 -5.4699 0.9575 12 1 1.6635 -6.5978 -0.4336 13 1 1.7972 -6.7743 1.9812 14 6 1.6996 -0.2253 2.4203 15 8 0.9371 0.7109 2.5335 16 6 2.2907 -0.8684 3.6483 17 1 2.4086 -1.9380 3.4744 18 6 3.6604 -0.2460 3.9398 19 16 4.3784 -1.0824 5.3867 20 6 3.0236 -0.9714 6.5954 21 6 1.7416 -1.4940 5.9382 22 7 1.3951 -0.6564 4.7876 23 1 -0.3633 0.4911 0.9028 24 1 -0.3633 0.5362 -0.8767 25 1 -0.3633 -1.0274 -0.0261 26 1 1.8934 -0.5138 -0.8899 27 1 3.1288 1.4430 -0.0509 28 1 1.6357 1.9709 -0.8635 29 1 1.7187 1.9415 0.9143 30 1 3.4317 -1.8245 0.1401 31 1 3.5313 -1.9542 1.9126 32 1 4.2453 -5.3678 0.7305 33 1 3.5421 0.8165 4.1524 34 1 4.3142 -0.3794 3.0779 35 1 3.2613 -1.5788 7.4687 36 1 2.8843 0.0673 6.8950 37 1 0.9273 -1.4693 6.6624 38 1 1.8990 -2.5199 5.6050 39 1 1.3637 0.3183 5.0464 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126709849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:45 Heat of formation + Delta-G solvation = -53.288911 kcal Electronic energy + Delta-G solvation = -20318.991560 eV Core-core repulsion = 17386.848008 eV Total energy + Delta-G solvation = -2932.143552 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.26709 -38.32034 -36.87131 -35.05517 -33.68348 -32.14111 -29.43484 -28.88925 -27.99930 -25.73694 -24.62333 -23.66780 -22.32377 -19.97052 -18.75056 -18.15052 -17.36831 -17.21727 -16.31941 -16.12672 -15.77838 -15.63085 -15.51907 -15.02455 -14.68131 -14.48074 -14.22466 -14.09522 -13.91754 -13.60034 -13.24156 -12.88367 -12.75502 -12.72641 -12.67233 -12.58635 -12.36511 -12.17928 -12.10358 -11.69369 -11.60102 -11.15353 -10.63162 -10.36420 -9.66491 -9.41458 -8.68633 -8.19689 -6.33878 0.60364 1.35295 1.38462 1.42078 1.52216 1.75979 2.26709 2.41975 3.10173 3.14208 3.59682 3.67483 3.86946 3.92258 4.11868 4.14939 4.28659 4.39990 4.42112 4.43620 4.60832 4.71692 4.73852 4.81447 4.92282 4.96402 5.02223 5.04248 5.16633 5.31499 5.44358 5.67562 5.79316 5.98257 6.07062 6.30614 6.59655 6.84312 7.33001 7.43593 8.85380 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.008878 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.392916 B = 3153.083411 C = 4463.615391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 C -0.153 4.153 4 N -0.594 5.594 5 C 0.251 3.749 6 C -0.543 4.543 7 H 0.048 0.952 8 C 0.025 3.975 9 N -0.916 5.916 10 Si 0.951 3.049 11 H -0.273 1.273 12 H -0.277 1.277 13 H -0.277 1.277 14 C 0.530 3.470 15 O -0.566 6.566 16 C 0.081 3.919 17 H 0.100 0.900 18 C -0.092 4.092 19 S -0.289 6.289 20 C -0.108 4.108 21 C 0.061 3.939 22 N -0.680 5.680 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.035 0.965 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.020 0.980 31 H 0.030 0.970 32 H 0.267 0.733 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.132 0.868 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.070 0.930 39 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.595 8.021 6.912 10.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.034 3.966 3 C -0.211 4.211 4 N -0.324 5.324 5 C 0.130 3.870 6 C -0.581 4.581 7 H 0.067 0.933 8 C -0.176 4.176 9 N -0.555 5.555 10 Si 0.777 3.223 11 H -0.198 1.198 12 H -0.203 1.203 13 H -0.203 1.203 14 C 0.316 3.684 15 O -0.447 6.447 16 C -0.034 4.034 17 H 0.117 0.883 18 C -0.243 4.243 19 S -0.062 6.062 20 C -0.258 4.258 21 C -0.069 4.069 22 N -0.311 5.311 23 H 0.079 0.921 24 H 0.100 0.900 25 H 0.054 0.946 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.150 0.850 36 H 0.120 0.880 37 H 0.136 0.864 38 H 0.089 0.911 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.265 7.464 6.831 10.197 hybrid contribution -0.487 -0.264 -0.179 0.582 sum -1.752 7.200 6.652 9.957 Atomic orbital electron populations 1.22081 0.95132 1.01080 1.03043 1.21093 0.94799 0.93440 0.87304 1.22071 1.00685 0.95133 1.03238 1.48275 1.50754 1.28217 1.05188 1.19136 0.89636 0.81124 0.97107 1.21658 0.93362 0.91902 1.51197 0.93324 1.25583 0.96064 1.01496 0.94461 1.70006 1.10674 1.24785 1.50039 0.85609 0.79121 0.79666 0.77919 1.19795 1.20283 1.20308 1.20283 0.80697 0.82794 0.84601 1.90500 1.36779 1.30577 1.86870 1.21540 0.89633 1.01580 0.90681 0.88252 1.23920 0.99190 1.01924 0.99251 1.87177 1.27610 1.78837 1.12567 1.24373 0.95427 1.06611 0.99346 1.22327 0.95800 0.97163 0.91608 1.59573 1.52131 1.12888 1.06505 0.92077 0.90035 0.94553 0.90057 0.92923 0.89718 0.92391 0.96182 0.95209 0.92374 0.88508 0.88085 0.84975 0.88001 0.86383 0.91110 0.82612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.44 9.15 71.98 0.66 -4.78 16 2 C 0.14 4.95 3.28 45.00 0.15 5.10 16 3 C -0.15 -4.67 9.16 71.98 0.66 -4.01 16 4 N -0.59 -24.57 2.41 -802.14 -1.93 -26.50 16 5 C 0.25 11.94 4.76 85.63 0.41 12.35 16 6 C -0.54 -28.48 9.09 25.60 0.23 -28.25 16 7 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 8 C 0.02 1.30 5.46 84.65 0.46 1.77 16 9 N -0.92 -50.58 13.29 21.44 0.28 -50.29 16 10 Si 0.95 42.47 29.54 68.60 2.03 44.49 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 13 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 14 C 0.53 21.29 6.27 87.66 0.55 21.84 16 15 O -0.57 -23.51 12.68 -3.02 -0.04 -23.55 16 16 C 0.08 2.93 1.85 44.33 0.08 3.01 16 17 H 0.10 4.32 6.18 -2.38 -0.01 4.30 16 18 C -0.09 -2.95 5.64 72.07 0.41 -2.55 16 19 S -0.29 -8.63 22.39 -56.49 -1.27 -9.90 16 20 C -0.11 -2.29 6.59 72.07 0.47 -1.82 16 21 C 0.06 1.51 6.42 86.47 0.56 2.06 16 22 N -0.68 -21.02 6.01 -496.52 -2.99 -24.01 16 23 H 0.06 2.34 6.00 -2.39 -0.01 2.32 16 24 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 2.95 7.79 -2.39 -0.02 2.93 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.06 1.94 6.24 -2.39 -0.01 1.93 16 30 H 0.02 1.01 7.92 -2.39 -0.02 0.99 16 31 H 0.03 1.47 5.41 -2.39 -0.01 1.46 16 32 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 33 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.10 3.51 7.32 -2.39 -0.02 3.49 16 35 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.12 2.22 8.14 -2.38 -0.02 2.21 16 38 H 0.07 2.04 7.91 -2.38 -0.02 2.02 16 39 H 0.35 10.03 8.43 -89.69 -0.76 9.28 16 Total: -1.00 -59.45 319.73 1.01 -58.43 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.29 Total: 26.61 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 4.63 Total: 4.71 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -4.63 Total: -100.80 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.04 Total: -23.55 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.27 Total: -9.90 kcal Total: -59.45 1.01 -58.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126709849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.145 kcal (2) G-P(sol) polarization free energy of solvation -59.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds