Wall clock time and date at job start Mon Mar 30 2020 04:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00413 * 2 1 4 4 H 1.48499 * 109.46829 * 265.59305 * 3 2 1 5 5 H 1.48504 * 109.46738 * 25.58875 * 3 2 1 6 6 H 1.48497 * 109.47547 * 145.59211 * 3 2 1 7 7 C 1.37885 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99634 * 352.89865 * 7 2 1 9 9 C 1.50692 * 120.00070 * 172.88982 * 7 2 1 10 10 H 1.09004 * 109.47500 * 3.88336 * 9 7 2 11 11 N 1.46897 * 109.47288 * 123.88073 * 9 7 2 12 12 C 1.46902 * 111.00377 * 275.00184 * 11 9 7 13 13 C 1.53002 * 109.47217 * 179.97438 * 12 11 9 14 14 N 1.46500 * 109.47024 * 180.02562 * 13 12 11 15 15 C 1.35309 * 125.86923 * 125.00340 * 14 13 12 16 16 C 1.35352 * 106.17735 * 180.02562 * 15 14 13 17 17 N 1.33776 * 106.49495 * 359.97438 * 16 15 14 18 18 N 1.28636 * 108.88541 * 359.73920 * 17 16 15 19 19 C 1.50705 * 109.47408 * 243.88418 * 9 7 2 20 20 C 1.38233 * 119.99570 * 285.70401 * 19 9 7 21 21 C 1.38235 * 119.99602 * 179.78627 * 20 19 9 22 22 C 1.38234 * 120.00138 * 0.44498 * 21 20 19 23 23 C 1.38240 * 119.99940 * 359.80758 * 22 21 20 24 24 C 1.38230 * 120.00051 * 105.98029 * 19 9 7 25 25 H 0.97003 * 120.00382 * 0.02562 * 1 2 3 26 26 H 1.00905 * 111.00232 * 151.04332 * 11 9 7 27 27 H 1.08997 * 109.46993 * 299.99824 * 12 11 9 28 28 H 1.09008 * 109.46756 * 60.00139 * 12 11 9 29 29 H 1.08997 * 109.47068 * 300.00445 * 13 12 11 30 30 H 1.08997 * 109.46871 * 60.00266 * 13 12 11 31 31 H 1.08003 * 126.91108 * 359.97438 * 15 14 13 32 32 H 1.07998 * 126.75125 * 179.97438 * 16 15 14 33 33 H 1.07994 * 120.00497 * 359.97438 * 20 19 9 34 34 H 1.07999 * 120.00236 * 180.27362 * 21 20 19 35 35 H 1.07999 * 120.00596 * 179.83405 * 22 21 20 36 36 H 1.08004 * 120.00155 * 180.02562 * 23 22 21 37 37 H 1.08003 * 120.00178 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.5899 1.9924 -1.3959 5 1 1.4031 2.6777 0.6047 6 1 3.4970 1.4688 0.7911 7 6 2.0045 -1.1941 0.0005 8 1 1.4706 -2.1258 0.1166 9 6 3.5027 -1.1993 -0.1610 10 1 3.8681 -0.1729 -0.1948 11 7 4.1154 -1.8998 0.9755 12 6 4.3044 -0.9912 2.1143 13 6 4.9427 -1.7553 3.2760 14 7 5.1306 -0.8493 4.4118 15 6 4.6659 -1.0450 5.6674 16 6 5.0645 0.0288 6.3887 17 7 5.7452 0.8181 5.5501 18 7 5.7712 0.2669 4.3881 19 6 3.8675 -1.9047 -1.4418 20 6 3.7787 -3.2819 -1.5218 21 6 4.1091 -3.9286 -2.6980 22 6 4.5371 -3.1989 -3.7912 23 6 4.6310 -1.8222 -3.7096 24 6 4.2965 -1.1751 -2.5347 25 1 -0.4851 0.8400 -0.0004 26 1 4.9879 -2.3300 0.7075 27 1 4.9557 -0.1687 1.8185 28 1 3.3383 -0.5953 2.4274 29 1 4.2911 -2.5777 3.5716 30 1 5.9087 -2.1516 2.9632 31 1 4.0916 -1.8879 6.0225 32 1 4.8711 0.2122 7.4352 33 1 3.4482 -3.8523 -0.6664 34 1 4.0354 -5.0042 -2.7619 35 1 4.7979 -3.7044 -4.7094 36 1 4.9651 -1.2520 -4.5639 37 1 4.3698 -0.0995 -2.4709 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126785354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:30 Heat of formation + Delta-G solvation = 130.147145 kcal Electronic energy + Delta-G solvation = -20100.935537 eV Core-core repulsion = 17073.595169 eV Total energy + Delta-G solvation = -3027.340368 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.10046 -38.79926 -36.44959 -34.46964 -32.41926 -31.10595 -30.89977 -30.30213 -28.42070 -26.49661 -23.68127 -22.61671 -22.30377 -21.82508 -20.93930 -19.93270 -17.46730 -17.10110 -16.49738 -16.09965 -15.31070 -14.84667 -14.66337 -14.56882 -14.33116 -13.86860 -13.69530 -13.08029 -12.79978 -12.73324 -12.38691 -12.11163 -11.88838 -11.60680 -11.30307 -11.03366 -10.96901 -10.80628 -10.50810 -10.27653 -9.93119 -9.88684 -9.68047 -9.30005 -8.75044 -8.33919 -8.03908 -7.62908 -6.25815 -4.24137 1.72071 1.97530 2.01266 2.46880 2.68196 3.15583 3.23270 3.27228 4.23841 4.36739 4.51275 4.61444 4.89382 5.03282 5.11017 5.23368 5.28797 5.30886 5.43579 5.47678 5.61525 5.74321 5.84568 6.01826 6.14054 6.15432 6.24360 6.31736 6.40302 6.59677 6.66988 6.69539 7.02616 7.05614 7.27130 7.37616 7.63893 7.68000 8.06231 8.46066 8.62351 8.86563 9.35880 10.86331 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016450 B = 0.005563 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.727757 B = 5032.424450 C = 5975.395391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.076 3.924 3 Si 0.864 3.136 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.484 4.484 8 H 0.083 0.917 9 C 0.216 3.784 10 H 0.022 0.978 11 N -0.673 5.673 12 C 0.055 3.945 13 C 0.115 3.885 14 N -0.281 5.281 15 C -0.048 4.048 16 C -0.060 4.060 17 N -0.281 5.281 18 N -0.085 5.085 19 C -0.044 4.044 20 C -0.101 4.101 21 C -0.126 4.126 22 C -0.145 4.145 23 C -0.123 4.123 24 C -0.129 4.129 25 H 0.267 0.733 26 H 0.316 0.684 27 H 0.036 0.964 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.190 0.810 32 H 0.187 0.813 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.604 -6.102 3.930 12.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.128 4.128 3 Si 0.691 3.309 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.523 4.523 8 H 0.101 0.899 9 C 0.109 3.891 10 H 0.040 0.960 11 N -0.305 5.305 12 C -0.075 4.075 13 C -0.006 4.006 14 N -0.075 5.075 15 C -0.199 4.199 16 C -0.217 4.217 17 N -0.146 5.146 18 N -0.065 5.065 19 C -0.045 4.045 20 C -0.120 4.120 21 C -0.144 4.144 22 C -0.164 4.164 23 C -0.141 4.141 24 C -0.148 4.148 25 H 0.077 0.923 26 H 0.132 0.868 27 H 0.054 0.946 28 H 0.105 0.895 29 H 0.134 0.866 30 H 0.112 0.888 31 H 0.207 0.793 32 H 0.204 0.796 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.619 -5.237 3.272 11.430 hybrid contribution 0.210 0.647 0.223 0.716 sum 9.829 -4.590 3.495 11.397 Atomic orbital electron populations 1.69873 1.06153 1.27231 1.48963 1.25082 0.94768 0.98696 0.94274 0.87080 0.80411 0.84328 0.79075 1.19898 1.21162 1.18939 1.20781 0.87789 0.94934 1.48765 0.89927 1.18730 0.96128 0.90924 0.83285 0.96035 1.61014 1.27874 1.33688 1.07876 1.22024 1.00943 0.94054 0.90485 1.22259 1.03297 0.90917 0.84147 1.47564 1.34000 1.16119 1.09866 1.23725 1.06715 1.04256 0.85211 1.23585 1.03165 0.93182 1.01787 1.75097 1.18097 1.24862 0.96567 1.78308 1.15149 0.95449 1.17564 1.20439 0.93149 0.93915 0.97030 1.20982 0.99074 0.94296 0.97622 1.21080 1.00464 0.99172 0.93728 1.20909 1.02952 0.94178 0.98339 1.20960 1.01205 0.94608 0.97353 1.20998 1.00817 0.99400 0.93599 0.92308 0.86771 0.94561 0.89495 0.86628 0.88759 0.79296 0.79595 0.85650 0.87020 0.87238 0.87114 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.86 20.94 27.04 -169.99 -4.60 16.35 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.22 6.68 56.52 0.38 -5.85 16 7 C -0.48 -12.68 8.85 -34.44 -0.30 -12.98 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 9 C 0.22 4.67 2.18 -70.02 -0.15 4.52 16 10 H 0.02 0.50 4.14 -51.93 -0.22 0.28 16 11 N -0.67 -12.14 5.84 -109.18 -0.64 -12.78 16 12 C 0.06 0.96 5.61 -3.82 -0.02 0.94 16 13 C 0.11 1.48 6.72 -4.04 -0.03 1.45 16 14 N -0.28 -4.07 3.44 -61.26 -0.21 -4.28 16 15 C -0.05 -0.56 11.57 -17.05 -0.20 -0.76 16 16 C -0.06 -0.76 12.05 -17.73 -0.21 -0.97 16 17 N -0.28 -4.74 12.41 30.24 0.38 -4.36 16 18 N -0.08 -1.48 12.92 60.35 0.78 -0.70 16 19 C -0.04 -0.88 4.65 -104.62 -0.49 -1.37 16 20 C -0.10 -1.83 9.08 -39.58 -0.36 -2.19 16 21 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 22 C -0.15 -2.23 10.05 -39.58 -0.40 -2.62 16 23 C -0.12 -2.01 10.05 -39.58 -0.40 -2.41 16 24 C -0.13 -2.45 9.67 -39.59 -0.38 -2.83 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.32 4.92 8.14 -39.29 -0.32 4.60 16 27 H 0.04 0.68 8.04 -51.93 -0.42 0.27 16 28 H 0.09 1.78 8.00 -51.92 -0.42 1.37 16 29 H 0.12 1.24 8.07 -51.93 -0.42 0.83 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.19 1.44 8.06 -52.48 -0.42 1.01 16 32 H 0.19 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.13 2.22 7.90 -52.49 -0.41 1.81 16 34 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.11 2.05 8.00 -52.48 -0.42 1.63 16 LS Contribution 319.55 15.07 4.82 4.82 Total: -1.00 -31.76 319.55 -6.88 -38.64 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -4.74 Total: 7.18 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -3.44 Total: -19.63 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: 1.08 Total: -47.35 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.60 Total: 16.35 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.76 -6.88 -38.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126785354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.783 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds