Wall clock time and date at job start Mon Mar 30 2020 04:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99763 * 2 1 4 4 H 1.48506 * 109.47259 * 270.00003 * 3 2 1 5 5 H 1.48500 * 109.47618 * 29.99982 * 3 2 1 6 6 H 1.48501 * 109.47013 * 149.99947 * 3 2 1 7 7 C 1.37879 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99562 * 182.05821 * 7 2 1 9 9 C 1.50701 * 119.99773 * 2.05530 * 7 2 1 10 10 H 1.09000 * 109.47251 * 335.11279 * 9 7 2 11 11 N 1.46890 * 109.46955 * 215.11024 * 9 7 2 12 12 C 1.46905 * 111.00335 * 85.00327 * 11 9 7 13 13 C 1.52998 * 109.47361 * 179.97438 * 12 11 9 14 14 N 1.46500 * 109.46971 * 179.97438 * 13 12 11 15 15 C 1.35315 * 125.86579 * 125.00347 * 14 13 12 16 16 C 1.35349 * 106.17260 * 180.02562 * 15 14 13 17 17 N 1.33763 * 106.50070 * 359.97438 * 16 15 14 18 18 N 1.28637 * 108.88374 * 359.73684 * 17 16 15 19 19 C 1.50706 * 109.46657 * 95.11070 * 9 7 2 20 20 C 1.38230 * 120.00071 * 73.99957 * 19 9 7 21 21 C 1.38232 * 120.00352 * 179.80566 * 20 19 9 22 22 C 1.38238 * 119.99733 * 0.39556 * 21 20 19 23 23 C 1.38238 * 119.99683 * 359.85536 * 22 21 20 24 24 C 1.38231 * 120.00288 * 359.95661 * 23 22 21 25 25 H 0.97005 * 119.99438 * 359.97438 * 1 2 3 26 26 H 1.00904 * 110.99878 * 208.95510 * 11 9 7 27 27 H 1.09000 * 109.46875 * 300.00088 * 12 11 9 28 28 H 1.09002 * 109.46710 * 59.99522 * 12 11 9 29 29 H 1.09000 * 109.47430 * 300.00033 * 13 12 11 30 30 H 1.08999 * 109.46649 * 60.00366 * 13 12 11 31 31 H 1.07994 * 126.90945 * 359.97438 * 15 14 13 32 32 H 1.08003 * 126.74844 * 179.97438 * 16 15 14 33 33 H 1.08003 * 119.99755 * 359.97438 * 20 19 9 34 34 H 1.08002 * 120.00539 * 180.22547 * 21 20 19 35 35 H 1.07994 * 120.00043 * 179.82942 * 22 21 20 36 36 H 1.08000 * 119.99653 * 179.97438 * 23 22 21 37 37 H 1.08001 * 119.99917 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0840 -1.1943 0.0331 9 6 1.2518 -2.4987 -0.0479 10 1 0.2498 -2.3549 0.3563 11 7 1.9632 -3.5039 0.7528 12 6 1.5870 -3.4109 2.1698 13 6 2.3461 -4.4714 2.9697 14 7 1.9714 -4.3782 4.3829 15 6 1.4878 -5.3878 5.1431 16 6 1.2780 -4.8657 6.3741 17 7 1.6393 -3.5795 6.3078 18 7 2.0510 -3.3235 5.1163 19 6 1.1544 -2.9708 -1.4758 20 6 2.2661 -3.4961 -2.1074 21 6 2.1759 -3.9328 -3.4158 22 6 0.9758 -3.8367 -4.0953 23 6 -0.1346 -3.3066 -3.4653 24 6 -0.0453 -2.8735 -2.1556 25 1 -0.4849 0.8401 0.0004 26 1 1.7992 -4.4331 0.3953 27 1 1.8390 -2.4203 2.5483 28 1 0.5147 -3.5772 2.2726 29 1 2.0938 -5.4619 2.5911 30 1 3.4185 -4.3054 2.8669 31 1 1.3051 -6.4051 4.8302 32 1 0.8944 -5.3854 7.2396 33 1 3.2046 -3.5677 -1.5777 34 1 3.0435 -4.3466 -3.9082 35 1 0.9060 -4.1754 -5.1184 36 1 -1.0720 -3.2312 -3.9963 37 1 -0.9130 -2.4598 -1.6634 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126785577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:31 Heat of formation + Delta-G solvation = 106.805562 kcal Electronic energy + Delta-G solvation = -19979.965504 eV Core-core repulsion = 16951.612970 eV Total energy + Delta-G solvation = -3028.352535 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.13664 -40.06115 -37.71902 -35.77105 -34.21659 -32.25850 -31.90779 -31.52792 -29.60296 -27.88928 -25.15545 -23.93805 -23.44160 -23.01326 -22.09035 -21.61281 -18.62155 -18.39636 -17.70340 -17.21839 -16.69055 -16.23624 -15.99400 -15.79154 -15.53461 -15.26518 -14.82435 -14.47430 -14.19440 -13.89312 -13.70818 -13.39357 -13.09677 -12.85994 -12.82052 -12.65013 -12.34987 -11.98183 -11.86703 -11.80082 -11.55071 -11.40503 -11.06918 -10.62625 -10.30007 -9.58318 -9.33765 -9.23649 -8.15382 -6.25494 0.71825 0.73816 0.76539 1.35773 1.37922 1.46650 1.49723 1.68230 2.37574 3.03702 3.24906 3.44207 3.58210 3.83927 4.03288 4.22636 4.28157 4.29895 4.33074 4.35729 4.43944 4.55754 4.62878 4.85640 4.91045 4.96420 5.06573 5.20457 5.32129 5.37874 5.44188 5.67433 5.70462 5.80497 5.81603 5.98174 6.11877 6.26609 6.41917 6.85735 6.95357 7.41403 7.58700 8.87522 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.005445 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.008694 B = 5140.968599 C = 6526.935550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.015 3.985 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.495 4.495 8 H 0.054 0.946 9 C 0.245 3.755 10 H 0.004 0.996 11 N -0.669 5.669 12 C 0.072 3.928 13 C 0.125 3.875 14 N -0.286 5.286 15 C -0.034 4.034 16 C -0.068 4.068 17 N -0.320 5.320 18 N -0.135 5.135 19 C -0.062 4.062 20 C -0.116 4.116 21 C -0.126 4.126 22 C -0.141 4.141 23 C -0.131 4.131 24 C -0.137 4.137 25 H 0.260 0.740 26 H 0.334 0.666 27 H 0.049 0.951 28 H 0.010 0.990 29 H 0.148 0.852 30 H 0.112 0.888 31 H 0.240 0.760 32 H 0.222 0.778 33 H 0.123 0.877 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.130 0.870 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.238 -15.878 -0.051 16.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.773 3.227 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.137 3.863 10 H 0.021 0.979 11 N -0.301 5.301 12 C -0.059 4.059 13 C 0.005 3.995 14 N -0.081 5.081 15 C -0.186 4.186 16 C -0.226 4.226 17 N -0.185 5.185 18 N -0.115 5.115 19 C -0.064 4.064 20 C -0.135 4.135 21 C -0.144 4.144 22 C -0.159 4.159 23 C -0.149 4.149 24 C -0.156 4.156 25 H 0.069 0.931 26 H 0.151 0.849 27 H 0.068 0.932 28 H 0.028 0.972 29 H 0.166 0.834 30 H 0.130 0.870 31 H 0.257 0.743 32 H 0.239 0.761 33 H 0.141 0.859 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.148 0.852 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.058 -13.839 0.056 14.173 hybrid contribution -1.197 0.177 0.094 1.213 sum 1.861 -13.662 0.149 13.789 Atomic orbital electron populations 1.70016 1.07062 1.27230 1.51524 1.25679 0.95606 1.02332 0.94820 0.85714 0.78911 0.79872 0.78182 1.20012 1.21309 1.19360 1.21211 0.93046 0.90301 1.48792 0.92756 1.18077 0.92460 0.89367 0.86348 0.97861 1.60566 1.61588 1.07557 1.00374 1.21745 0.95394 0.98764 0.89991 1.22236 1.02280 1.02673 0.72346 1.47736 1.40543 1.07521 1.12256 1.24548 1.04141 0.98147 0.91722 1.24331 1.06689 0.91198 1.00372 1.75058 1.15053 1.17335 1.11010 1.78396 1.21944 1.12612 0.98509 1.20489 0.93239 0.94452 0.98192 1.21055 0.97858 0.99190 0.95375 1.21413 0.98528 1.00207 0.94219 1.21312 0.92742 1.01152 1.00659 1.21274 0.99797 0.99667 0.94174 1.21052 0.97548 1.00916 0.96048 0.93097 0.84856 0.93246 0.97188 0.83388 0.86973 0.74326 0.76117 0.85922 0.83810 0.83696 0.85189 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.72 12.78 21.45 0.27 -53.44 16 2 C 0.02 0.85 5.46 84.65 0.46 1.31 16 3 Si 0.95 45.18 29.54 68.60 2.03 47.21 16 4 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.49 -26.80 8.30 25.60 0.21 -26.58 16 8 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 9 C 0.25 11.67 2.34 43.43 0.10 11.77 16 10 H 0.00 0.19 6.73 -2.39 -0.02 0.18 16 11 N -0.67 -25.18 5.84 -499.36 -2.92 -28.09 16 12 C 0.07 2.61 5.61 86.30 0.48 3.09 16 13 C 0.13 3.05 6.71 86.38 0.58 3.63 16 14 N -0.29 -7.96 3.44 -347.74 -1.20 -9.16 16 15 C -0.03 -0.66 11.57 83.49 0.97 0.30 16 16 C -0.07 -1.57 12.05 83.73 1.01 -0.56 16 17 N -0.32 -11.06 12.41 -58.26 -0.72 -11.78 16 18 N -0.14 -5.01 12.92 37.02 0.48 -4.53 16 19 C -0.06 -2.68 4.65 -19.87 -0.09 -2.77 16 20 C -0.12 -4.25 9.08 22.27 0.20 -4.05 16 21 C -0.13 -3.78 10.05 22.27 0.22 -3.56 16 22 C -0.14 -4.10 10.05 22.27 0.22 -3.88 16 23 C -0.13 -4.45 10.05 22.27 0.22 -4.22 16 24 C -0.14 -5.76 9.67 22.27 0.22 -5.54 16 25 H 0.26 14.67 8.31 -92.70 -0.77 13.89 16 26 H 0.33 10.41 8.15 -89.69 -0.73 9.68 16 27 H 0.05 2.26 7.98 -2.39 -0.02 2.24 16 28 H 0.01 0.39 8.06 -2.39 -0.02 0.37 16 29 H 0.15 2.17 8.07 -2.39 -0.02 2.15 16 30 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.24 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.22 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.12 4.35 7.91 -2.91 -0.02 4.33 16 34 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 35 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 36 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 37 H 0.09 4.21 8.00 -2.91 -0.02 4.18 16 Total: -1.00 -73.20 323.27 3.09 -70.11 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.34 Total: 20.76 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 4.81 Total: -31.06 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -4.08 Total: -107.01 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -73.20 3.09 -70.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126785577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.914 kcal (2) G-P(sol) polarization free energy of solvation -73.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds