Wall clock time and date at job start Mon Mar 30 2020 04:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86801 * 120.00291 * 2 1 4 4 H 1.48498 * 109.46897 * 240.00310 * 3 2 1 5 5 H 1.48498 * 109.46695 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47266 * 120.00121 * 3 2 1 7 7 C 1.39889 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00180 * 163.98346 * 7 2 1 9 9 C 1.41031 * 119.99920 * 343.98915 * 7 2 1 10 10 C 1.40670 * 120.26406 * 333.61034 * 9 7 2 11 11 C 1.38007 * 119.76838 * 180.02562 * 10 9 7 12 12 N 1.39851 * 119.84095 * 179.97438 * 11 10 9 13 13 C 1.46502 * 119.99686 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.46566 * 180.02562 * 13 12 11 15 15 N 1.46501 * 109.46937 * 180.02562 * 14 13 12 16 16 C 1.34939 * 126.04121 * 124.99778 * 15 14 13 17 17 C 1.35313 * 107.75096 * 179.97438 * 16 15 14 18 18 C 1.39876 * 107.91762 * 0.02562 * 17 16 15 19 19 N 1.30836 * 108.19858 * 359.73867 * 18 17 16 20 20 C 1.39610 * 120.31955 * 0.02978 * 11 10 9 21 21 C 1.38054 * 120.55017 * 359.96981 * 20 11 10 22 22 C 1.38743 * 120.21938 * 0.26084 * 21 20 11 23 23 N 1.38867 * 120.16005 * 179.74341 * 22 21 20 24 24 H 0.96999 * 120.00057 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.11638 * 0.05133 * 10 9 7 26 26 H 0.96993 * 119.99719 * 0.03071 * 12 11 10 27 27 H 1.08993 * 109.47192 * 300.00390 * 13 12 11 28 28 H 1.09003 * 109.47078 * 60.00699 * 13 12 11 29 29 H 1.09004 * 109.46829 * 299.99748 * 14 13 12 30 30 H 1.08995 * 109.47438 * 60.00193 * 14 13 12 31 31 H 1.08005 * 126.12618 * 359.95656 * 16 15 14 32 32 H 1.08003 * 126.04712 * 179.97438 * 17 16 15 33 33 H 1.08004 * 125.89614 * 179.97438 * 18 17 16 34 34 H 1.07991 * 119.72450 * 179.97438 * 20 11 10 35 35 H 1.08003 * 119.89120 * 179.97438 * 21 20 11 36 36 H 0.96995 * 120.00056 * 0.02562 * 23 22 21 37 37 H 0.97003 * 119.99382 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2781 2.7464 -0.0006 6 1 3.0968 1.6963 1.2124 7 6 2.0084 -1.2115 0.0005 8 1 3.0569 -1.2298 -0.2575 9 6 1.3443 -2.4090 0.3380 10 6 0.2151 -2.3814 1.1765 11 6 -0.4266 -3.5595 1.5005 12 7 -1.5490 -3.5339 2.3344 13 6 -2.2325 -4.7824 2.6810 14 6 -3.4191 -4.4767 3.5974 15 7 -4.1023 -5.7253 3.9445 16 6 -4.3554 -6.1713 5.1927 17 6 -5.0007 -7.3557 5.0846 18 6 -5.1465 -7.6437 3.7236 19 7 -4.6130 -6.6645 3.0393 20 6 0.0399 -4.7767 1.0007 21 6 1.1468 -4.8191 0.1768 22 6 1.8121 -3.6489 -0.1596 23 7 2.9285 -3.6935 -0.9842 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1485 -1.4417 1.5650 26 1 -1.8748 -2.6895 2.6832 27 1 -2.5909 -5.2650 1.7718 28 1 -1.5376 -5.4465 3.1952 29 1 -3.0609 -3.9940 4.5067 30 1 -4.1138 -3.8129 3.0830 31 1 -4.0901 -5.6725 6.1132 32 1 -5.3421 -7.9706 5.9043 33 1 -5.6212 -8.5209 3.3092 34 1 -0.4694 -5.6928 1.2608 35 1 1.4988 -5.7667 -0.2035 36 1 3.2448 -4.5441 -1.3268 37 1 3.3916 -2.8739 -1.2182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127273695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:26 Heat of formation + Delta-G solvation = 106.067355 kcal Electronic energy + Delta-G solvation = -19578.275015 eV Core-core repulsion = 16549.890470 eV Total energy + Delta-G solvation = -3028.384546 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.14064 -38.01171 -35.93585 -33.60348 -33.43579 -31.50987 -30.13891 -29.43392 -28.34152 -25.86495 -24.73633 -23.13345 -21.20927 -21.13082 -20.37467 -19.70832 -17.48016 -16.87032 -16.18273 -15.53609 -15.42875 -15.00362 -14.76198 -14.49207 -14.16114 -13.89040 -13.36047 -12.88101 -12.81973 -12.39879 -12.12753 -11.97044 -11.77886 -11.54068 -11.33048 -11.10181 -11.01537 -10.65197 -10.40624 -9.93585 -9.77835 -9.47207 -9.35324 -9.06447 -8.65767 -7.82637 -7.24657 -6.63031 -5.59279 -4.08270 1.86546 2.42385 2.80831 2.90864 3.11286 3.14250 3.29604 3.44734 4.02006 4.25213 4.61209 4.77967 4.80931 4.94407 5.03707 5.22366 5.41525 5.47698 5.67879 5.84294 5.92482 6.02867 6.15045 6.34720 6.59602 6.62307 6.94061 7.07756 7.12283 7.29002 7.44329 7.64655 7.67704 7.85399 7.95539 8.07720 8.42772 8.68607 8.82691 8.90780 8.97176 9.24063 9.31748 10.36140 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026305 B = 0.003726 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.199076 B = 7512.493325 C = 8363.395393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.077 3.923 3 Si 0.902 3.098 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.465 4.465 8 H 0.071 0.929 9 C 0.096 3.904 10 C -0.198 4.198 11 C 0.175 3.825 12 N -0.762 5.762 13 C 0.133 3.867 14 C 0.123 3.877 15 N -0.365 5.365 16 C 0.054 3.946 17 C -0.280 4.280 18 C 0.039 3.961 19 N -0.289 5.289 20 C -0.252 4.252 21 C -0.153 4.153 22 C 0.087 3.913 23 N -0.889 5.889 24 H 0.275 0.725 25 H 0.118 0.882 26 H 0.388 0.612 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.172 0.828 32 H 0.145 0.855 33 H 0.181 0.819 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.374 0.626 37 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.627 -7.015 8.594 12.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.496 4.496 8 H 0.089 0.911 9 C 0.090 3.910 10 C -0.223 4.223 11 C 0.077 3.923 12 N -0.399 5.399 13 C 0.006 3.994 14 C 0.001 3.999 15 N -0.147 5.147 16 C -0.093 4.093 17 C -0.310 4.310 18 C -0.147 4.147 19 N -0.111 5.111 20 C -0.276 4.276 21 C -0.177 4.177 22 C -0.014 4.014 23 N -0.431 5.431 24 H 0.086 0.914 25 H 0.136 0.864 26 H 0.221 0.779 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.190 0.810 32 H 0.163 0.837 33 H 0.198 0.802 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.199 0.801 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.602 -6.420 7.430 11.832 hybrid contribution 0.257 0.703 0.736 1.050 sum -6.345 -5.717 8.166 11.816 Atomic orbital electron populations 1.69870 1.07242 1.28488 1.37138 1.25745 0.94672 1.00664 0.92834 0.86476 0.80103 0.81006 0.79640 1.19361 1.20612 1.19160 1.19096 0.96849 0.91115 1.42541 0.91112 1.16955 0.92629 0.90261 0.91125 1.20465 1.01464 0.94969 1.05356 1.17444 0.87581 0.94250 0.92976 1.44085 1.32599 1.05819 1.57399 1.21108 0.91543 0.89021 0.97719 1.21896 0.94764 0.81834 1.01403 1.48635 1.44228 1.17963 1.03911 1.22594 1.00259 0.96824 0.89618 1.21487 1.12429 0.99720 0.97322 1.23906 0.99763 0.98308 0.92756 1.77437 1.16656 1.00503 1.16472 1.19629 1.02952 0.94444 1.10543 1.19710 0.98969 0.94720 1.04298 1.17871 0.91970 0.93911 0.97623 1.41816 1.33472 1.09227 1.58596 0.91392 0.86441 0.77873 0.91947 0.93131 0.88289 0.89244 0.81045 0.83701 0.80175 0.89751 0.89702 0.80065 0.78312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.79 10.97 55.55 0.61 -20.18 16 2 C 0.08 1.93 5.16 -17.33 -0.09 1.84 16 3 Si 0.90 18.81 29.59 -169.99 -5.03 13.78 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.16 8.48 -37.91 -0.32 -12.49 16 8 H 0.07 1.76 6.70 -52.49 -0.35 1.41 16 9 C 0.10 2.53 5.57 -106.66 -0.59 1.94 16 10 C -0.20 -5.11 8.49 -38.75 -0.33 -5.44 16 11 C 0.18 4.09 6.64 -83.77 -0.56 3.53 16 12 N -0.76 -14.26 5.74 -58.63 -0.34 -14.59 16 13 C 0.13 2.12 5.09 -4.04 -0.02 2.10 16 14 C 0.12 1.50 6.62 -4.04 -0.03 1.47 16 15 N -0.36 -4.74 3.68 -61.37 -0.23 -4.96 16 16 C 0.05 0.56 11.45 -17.23 -0.20 0.37 16 17 C -0.28 -2.87 10.80 -40.01 -0.43 -3.31 16 18 C 0.04 0.45 12.03 -17.36 -0.21 0.24 16 19 N -0.29 -4.24 12.42 30.63 0.38 -3.86 16 20 C -0.25 -5.86 9.31 -39.14 -0.36 -6.23 16 21 C -0.15 -3.57 9.86 -39.46 -0.39 -3.96 16 22 C 0.09 2.13 6.79 -83.22 -0.56 1.57 16 23 N -0.89 -18.35 8.98 32.75 0.29 -18.05 16 24 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 25 H 0.12 3.11 6.23 -52.49 -0.33 2.79 16 26 H 0.39 6.61 8.48 -40.82 -0.35 6.26 16 27 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 28 H 0.05 0.85 7.94 -51.93 -0.41 0.44 16 29 H 0.10 0.95 8.07 -51.93 -0.42 0.53 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.17 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.15 1.11 8.06 -52.48 -0.42 0.68 16 33 H 0.18 1.52 8.06 -52.48 -0.42 1.09 16 34 H 0.08 1.84 6.69 -52.49 -0.35 1.49 16 35 H 0.08 1.78 8.06 -52.48 -0.42 1.36 16 36 H 0.37 6.56 8.83 -40.82 -0.36 6.20 16 37 H 0.39 7.84 7.05 -40.82 -0.29 7.56 16 LS Contribution 315.60 15.07 4.76 4.76 Total: -1.00 -30.73 315.60 -8.16 -38.90 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: -4.52 Total: 22.57 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -4.09 Total: -18.35 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: 0.72 Total: -61.65 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.73 -8.16 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127273695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.963 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds