Wall clock time and date at job start Mon Mar 30 2020 04:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86801 * 120.00291 * 2 1 4 4 H 1.48498 * 109.46897 * 240.00310 * 3 2 1 5 5 H 1.48498 * 109.46695 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47266 * 120.00121 * 3 2 1 7 7 C 1.39889 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00180 * 163.98346 * 7 2 1 9 9 C 1.41031 * 119.99920 * 343.98915 * 7 2 1 10 10 C 1.40670 * 120.26406 * 333.61034 * 9 7 2 11 11 C 1.38007 * 119.76838 * 180.02562 * 10 9 7 12 12 N 1.39851 * 119.84095 * 179.97438 * 11 10 9 13 13 C 1.46502 * 119.99686 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.46566 * 180.02562 * 13 12 11 15 15 N 1.46501 * 109.46937 * 180.02562 * 14 13 12 16 16 C 1.34939 * 126.04121 * 124.99778 * 15 14 13 17 17 C 1.35313 * 107.75096 * 179.97438 * 16 15 14 18 18 C 1.39876 * 107.91762 * 0.02562 * 17 16 15 19 19 N 1.30836 * 108.19858 * 359.73867 * 18 17 16 20 20 C 1.39610 * 120.31955 * 0.02978 * 11 10 9 21 21 C 1.38054 * 120.55017 * 359.96981 * 20 11 10 22 22 C 1.38743 * 120.21938 * 0.26084 * 21 20 11 23 23 N 1.38867 * 120.16005 * 179.74341 * 22 21 20 24 24 H 0.96999 * 120.00057 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.11638 * 0.05133 * 10 9 7 26 26 H 0.96993 * 119.99719 * 0.03071 * 12 11 10 27 27 H 1.08993 * 109.47192 * 300.00390 * 13 12 11 28 28 H 1.09003 * 109.47078 * 60.00699 * 13 12 11 29 29 H 1.09004 * 109.46829 * 299.99748 * 14 13 12 30 30 H 1.08995 * 109.47438 * 60.00193 * 14 13 12 31 31 H 1.08005 * 126.12618 * 359.95656 * 16 15 14 32 32 H 1.08003 * 126.04712 * 179.97438 * 17 16 15 33 33 H 1.08004 * 125.89614 * 179.97438 * 18 17 16 34 34 H 1.07991 * 119.72450 * 179.97438 * 20 11 10 35 35 H 1.08003 * 119.89120 * 179.97438 * 21 20 11 36 36 H 0.96995 * 120.00056 * 0.02562 * 23 22 21 37 37 H 0.97003 * 119.99382 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2781 2.7464 -0.0006 6 1 3.0968 1.6963 1.2124 7 6 2.0084 -1.2115 0.0005 8 1 3.0569 -1.2298 -0.2575 9 6 1.3443 -2.4090 0.3380 10 6 0.2151 -2.3814 1.1765 11 6 -0.4266 -3.5595 1.5005 12 7 -1.5490 -3.5339 2.3344 13 6 -2.2325 -4.7824 2.6810 14 6 -3.4191 -4.4767 3.5974 15 7 -4.1023 -5.7253 3.9445 16 6 -4.3554 -6.1713 5.1927 17 6 -5.0007 -7.3557 5.0846 18 6 -5.1465 -7.6437 3.7236 19 7 -4.6130 -6.6645 3.0393 20 6 0.0399 -4.7767 1.0007 21 6 1.1468 -4.8191 0.1768 22 6 1.8121 -3.6489 -0.1596 23 7 2.9285 -3.6935 -0.9842 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1485 -1.4417 1.5650 26 1 -1.8748 -2.6895 2.6832 27 1 -2.5909 -5.2650 1.7718 28 1 -1.5376 -5.4465 3.1952 29 1 -3.0609 -3.9940 4.5067 30 1 -4.1138 -3.8129 3.0830 31 1 -4.0901 -5.6725 6.1132 32 1 -5.3421 -7.9706 5.9043 33 1 -5.6212 -8.5209 3.3092 34 1 -0.4694 -5.6928 1.2608 35 1 1.4988 -5.7667 -0.2035 36 1 3.2448 -4.5441 -1.3268 37 1 3.3916 -2.8739 -1.2182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127273695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:25 Heat of formation + Delta-G solvation = 85.771310 kcal Electronic energy + Delta-G solvation = -19579.155118 eV Core-core repulsion = 16549.890470 eV Total energy + Delta-G solvation = -3029.264648 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.00263 -39.79346 -37.43554 -35.35848 -34.87504 -32.95568 -31.33384 -31.04100 -29.66755 -27.46299 -26.52586 -24.44578 -22.90290 -21.97328 -21.47276 -21.43135 -19.02026 -18.19170 -17.75141 -17.27460 -16.64519 -16.61335 -16.36270 -15.87406 -15.24224 -15.02986 -14.56868 -14.34790 -14.16579 -13.78911 -13.71539 -13.55234 -13.23266 -13.05005 -12.87261 -12.72851 -12.68505 -12.10711 -11.79529 -11.59179 -11.39314 -11.20800 -10.93031 -10.40736 -9.51220 -9.48372 -9.17063 -8.50433 -7.36525 -6.01824 1.01504 1.11140 1.42477 1.49068 1.52544 1.53093 1.63788 1.99987 2.27812 2.87805 2.94868 3.58742 3.75115 3.84520 3.94073 4.07836 4.17636 4.24275 4.55530 4.60760 4.75767 4.79286 4.89141 4.93956 5.18518 5.22158 5.29007 5.39493 5.63331 5.76999 5.84498 6.02082 6.12402 6.15241 6.21774 6.53893 6.80841 6.93745 7.00228 7.08795 7.20873 7.44275 7.64360 8.50568 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026305 B = 0.003726 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.199076 B = 7512.493325 C = 8363.395393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.035 3.965 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.493 4.493 8 H 0.075 0.925 9 C 0.062 3.938 10 C -0.221 4.221 11 C 0.173 3.827 12 N -0.754 5.754 13 C 0.142 3.858 14 C 0.133 3.867 15 N -0.380 5.380 16 C 0.054 3.946 17 C -0.284 4.284 18 C 0.035 3.965 19 N -0.345 5.345 20 C -0.261 4.261 21 C -0.159 4.159 22 C 0.073 3.927 23 N -0.878 5.878 24 H 0.280 0.720 25 H 0.103 0.897 26 H 0.396 0.604 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.131 0.869 30 H 0.090 0.910 31 H 0.208 0.792 32 H 0.173 0.827 33 H 0.204 0.796 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.390 0.610 37 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.762 -7.200 9.888 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.178 4.178 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.524 4.524 8 H 0.093 0.907 9 C 0.057 3.943 10 C -0.245 4.245 11 C 0.073 3.927 12 N -0.390 5.390 13 C 0.016 3.984 14 C 0.011 3.989 15 N -0.163 5.163 16 C -0.092 4.092 17 C -0.313 4.313 18 C -0.151 4.151 19 N -0.167 5.167 20 C -0.284 4.284 21 C -0.184 4.184 22 C -0.030 4.030 23 N -0.422 5.422 24 H 0.091 0.909 25 H 0.121 0.879 26 H 0.230 0.770 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.149 0.851 30 H 0.108 0.892 31 H 0.225 0.775 32 H 0.190 0.810 33 H 0.221 0.779 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.218 0.782 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -6.750 -6.638 8.731 12.878 hybrid contribution 0.231 0.619 0.369 0.756 sum -6.519 -6.019 9.099 12.709 Atomic orbital electron populations 1.69949 1.08677 1.29597 1.37689 1.26566 0.95425 1.03863 0.91980 0.85354 0.78680 0.76496 0.79683 1.18681 1.19909 1.18906 1.19367 0.97228 0.91978 1.43782 0.90707 1.17366 0.93488 0.91469 0.91955 1.20447 1.02406 0.95169 1.06521 1.17532 0.88452 0.93609 0.93078 1.44065 1.31386 1.07359 1.56239 1.21035 0.92563 0.87412 0.97436 1.21787 0.93096 0.82073 1.01968 1.48680 1.44946 1.18050 1.04638 1.23289 0.99163 0.96883 0.89824 1.21899 1.12052 0.99985 0.97407 1.24466 0.98706 0.98259 0.93660 1.77386 1.18853 1.02102 1.18377 1.19876 1.03158 0.94880 1.10535 1.20022 0.98832 0.95463 1.04059 1.18032 0.93050 0.93649 0.98227 1.41691 1.32431 1.10262 1.57852 0.90936 0.87945 0.76951 0.94429 0.93761 0.85080 0.89189 0.77499 0.81006 0.77922 0.88541 0.87368 0.78207 0.78093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.97 10.97 21.82 0.24 -43.73 16 2 C 0.03 1.76 5.16 85.23 0.44 2.20 16 3 Si 0.98 38.62 29.59 68.60 2.03 40.65 16 4 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.49 -26.18 8.48 23.36 0.20 -25.98 16 8 H 0.07 3.76 6.70 -2.91 -0.02 3.74 16 9 C 0.06 3.38 5.57 -21.18 -0.12 3.27 16 10 C -0.22 -11.70 8.49 22.81 0.19 -11.50 16 11 C 0.17 8.19 6.64 38.14 0.25 8.45 16 12 N -0.75 -28.26 5.74 -339.42 -1.95 -30.20 16 13 C 0.14 4.49 5.09 86.38 0.44 4.93 16 14 C 0.13 3.06 6.62 86.38 0.57 3.64 16 15 N -0.38 -9.34 3.68 -348.06 -1.28 -10.62 16 16 C 0.05 0.99 11.45 83.54 0.96 1.94 16 17 C -0.28 -5.12 10.80 21.99 0.24 -4.88 16 18 C 0.03 0.76 12.03 85.24 1.03 1.79 16 19 N -0.35 -9.98 12.42 -57.02 -0.71 -10.68 16 20 C -0.26 -12.14 9.31 22.56 0.21 -11.93 16 21 C -0.16 -7.40 9.86 22.35 0.22 -7.17 16 22 C 0.07 3.56 6.79 38.97 0.26 3.82 16 23 N -0.88 -35.86 8.98 -50.31 -0.45 -36.31 16 24 H 0.28 13.60 8.30 -92.71 -0.77 12.83 16 25 H 0.10 5.63 6.23 -2.91 -0.02 5.61 16 26 H 0.40 13.46 8.48 -92.71 -0.79 12.67 16 27 H 0.04 1.39 7.94 -2.39 -0.02 1.37 16 28 H 0.04 1.47 7.94 -2.39 -0.02 1.45 16 29 H 0.13 2.16 8.07 -2.39 -0.02 2.14 16 30 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 31 H 0.21 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.20 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.10 4.18 6.69 -2.92 -0.02 4.16 16 35 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 36 H 0.39 13.22 8.83 -92.71 -0.82 12.40 16 37 H 0.39 15.67 7.05 -92.71 -0.65 15.01 16 Total: -1.00 -67.67 315.60 1.64 -66.03 By element: Atomic # 1 Polarization: 57.45 SS G_CDS: -1.13 Total: 56.31 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 4.89 Total: -31.44 kcal Atomic # 7 Polarization: -127.41 SS G_CDS: -4.15 Total: -131.55 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -67.67 1.64 -66.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127273695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.802 kcal (2) G-P(sol) polarization free energy of solvation -67.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds