Wall clock time and date at job start Mon Mar 30 2020 04:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30840 * 125.90366 * 2 1 4 4 N 1.40075 * 108.20473 * 179.97438 * 3 2 1 5 5 H 0.97008 * 126.03317 * 179.97438 * 4 3 2 6 6 C 1.34949 * 107.92954 * 359.75773 * 4 3 2 7 7 C 1.35318 * 107.74253 * 0.38744 * 6 4 3 8 8 C 1.50702 * 126.03821 * 179.87368 * 7 6 4 9 9 N 1.46496 * 109.47022 * 259.69395 * 8 7 6 10 10 C 1.39853 * 119.99949 * 180.02562 * 9 8 7 11 11 C 1.39609 * 119.83829 * 359.97438 * 10 9 8 12 12 C 1.38053 * 120.54581 * 180.30206 * 11 10 9 13 13 C 1.38733 * 120.22468 * 359.44619 * 12 11 10 14 14 N 1.38864 * 120.16759 * 180.29941 * 13 12 11 15 15 C 1.41567 * 119.67261 * 0.55003 * 13 12 11 16 16 C 1.41023 * 120.26645 * 179.70364 * 15 13 12 17 17 H 1.07997 * 120.00236 * 25.57142 * 16 15 13 18 18 C 1.39891 * 119.99629 * 205.56943 * 16 15 13 19 19 N 1.30897 * 120.00368 * 15.35441 * 18 16 15 20 20 Si 1.86798 * 119.99689 * 195.35812 * 18 16 15 21 21 H 1.48500 * 109.47523 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47109 * 119.99964 * 20 18 16 23 23 H 1.48499 * 109.47401 * 239.99959 * 20 18 16 24 24 C 1.38003 * 119.84112 * 180.02562 * 10 9 8 25 25 H 1.09000 * 109.46806 * 270.03151 * 1 2 3 26 26 H 1.09006 * 109.46871 * 30.02149 * 1 2 3 27 27 H 1.08996 * 109.47474 * 150.02482 * 1 2 3 28 28 H 1.07997 * 126.12585 * 180.23917 * 6 4 3 29 29 H 1.08999 * 109.46977 * 139.69165 * 8 7 6 30 30 H 1.09006 * 109.46936 * 19.69132 * 8 7 6 31 31 H 0.96998 * 120.00276 * 0.02562 * 9 8 7 32 32 H 1.07998 * 119.72364 * 0.02741 * 11 10 9 33 33 H 1.08008 * 119.88475 * 179.72400 * 12 11 10 34 34 H 0.96998 * 120.00692 * 180.25026 * 14 13 12 35 35 H 0.97007 * 119.99720 * 0.25429 * 14 13 12 36 36 H 0.96997 * 120.00163 * 179.97438 * 19 18 16 37 37 H 1.07998 * 120.11324 * 359.94920 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 1 4.3908 1.2078 0.0004 6 6 3.6141 -0.7155 0.0064 7 6 2.3270 -1.1331 0.0006 8 6 1.8597 -2.5658 0.0013 9 7 1.4804 -2.9564 -1.3587 10 6 1.0114 -4.2498 -1.6097 11 6 0.9065 -5.1662 -0.5617 12 6 0.4512 -6.4486 -0.7940 13 6 0.0813 -6.8374 -2.0733 14 7 -0.3824 -8.1257 -2.3045 15 6 0.1839 -5.9157 -3.1430 16 6 -0.1828 -6.2995 -4.4495 17 1 -0.9000 -7.0932 -4.5980 18 6 0.3825 -5.6521 -5.5532 19 7 1.4532 -4.9145 -5.4018 20 14 -0.3907 -5.8401 -7.2432 21 1 -1.5838 -6.7190 -7.1468 22 1 -0.7991 -4.5060 -7.7520 23 1 0.5957 -6.4443 -8.1745 24 6 0.6555 -4.6144 -2.8922 25 1 -0.3633 0.0006 1.0277 26 1 -0.3633 0.8899 -0.5142 27 1 -0.3634 -0.8902 -0.5134 28 1 4.4890 -1.3487 0.0119 29 1 0.9986 -2.6668 0.6619 30 1 2.6652 -3.2105 0.3532 31 1 1.5545 -2.3179 -2.0852 32 1 1.1881 -4.8707 0.4382 33 1 0.3786 -7.1503 0.0239 34 1 -0.6369 -8.3961 -3.2006 35 1 -0.4517 -8.7553 -1.5698 36 1 1.8454 -4.4659 -6.1672 37 1 0.7379 -3.9028 -3.7004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127302482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:43 Heat of formation + Delta-G solvation = 93.581689 kcal Electronic energy + Delta-G solvation = -19939.260522 eV Core-core repulsion = 16910.334557 eV Total energy + Delta-G solvation = -3028.925965 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.20639 -37.85253 -35.38436 -33.41942 -32.98147 -32.02459 -30.00496 -29.34426 -27.86045 -26.71013 -24.77014 -24.09905 -21.31515 -20.72511 -19.63717 -19.36874 -17.76536 -17.02157 -15.94483 -15.41076 -15.09890 -14.72024 -14.58494 -14.40293 -13.91997 -13.42382 -12.96519 -12.73049 -12.53541 -12.35870 -12.11589 -11.93280 -11.78640 -11.64607 -11.29493 -11.05263 -10.95220 -10.51352 -10.33297 -9.84592 -9.66304 -9.33621 -9.29288 -9.02663 -8.51084 -7.68764 -7.16825 -6.56797 -5.46747 -4.02380 1.88571 2.70917 2.87684 2.93267 3.16274 3.20491 3.35040 3.53841 4.06519 4.66732 4.81862 4.84295 4.90560 5.34208 5.43532 5.47483 5.63767 5.72549 5.94764 5.98955 6.04134 6.15316 6.38521 6.42583 6.67738 6.72518 7.17246 7.20866 7.25974 7.37521 7.55294 7.69250 7.76358 7.94376 8.07015 8.18840 8.51402 8.82291 8.96870 9.01006 9.05843 9.30801 9.39541 10.41464 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018950 B = 0.004713 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.246100 B = 5940.139649 C = 6864.851463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.094 3.906 3 N -0.304 5.304 4 N -0.482 5.482 5 H 0.437 0.563 6 C 0.073 3.927 7 C -0.242 4.242 8 C 0.217 3.783 9 N -0.758 5.758 10 C 0.179 3.821 11 C -0.256 4.256 12 C -0.153 4.153 13 C 0.083 3.917 14 N -0.890 5.890 15 C 0.094 3.906 16 C -0.463 4.463 17 H 0.071 0.929 18 C 0.076 3.924 19 N -0.801 5.801 20 Si 0.900 3.100 21 H -0.264 1.264 22 H -0.275 1.275 23 H -0.278 1.278 24 C -0.201 4.201 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.177 0.823 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.387 0.613 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.388 0.612 35 H 0.373 0.627 36 H 0.273 0.727 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.599 6.698 7.748 10.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.074 4.074 3 N -0.128 5.128 4 N -0.189 5.189 5 H 0.281 0.719 6 C -0.075 4.075 7 C -0.254 4.254 8 C 0.090 3.910 9 N -0.393 5.393 10 C 0.080 3.920 11 C -0.280 4.280 12 C -0.177 4.177 13 C -0.017 4.017 14 N -0.432 5.432 15 C 0.089 3.911 16 C -0.494 4.494 17 H 0.089 0.911 18 C -0.139 4.139 19 N -0.428 5.428 20 Si 0.726 3.274 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.204 1.204 24 C -0.226 4.226 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.194 0.806 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.220 0.780 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.216 0.784 35 H 0.198 0.802 36 H 0.084 0.916 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.853 8.156 7.804 11.643 hybrid contribution 0.348 -0.752 -1.138 1.408 sum 3.202 7.404 6.666 10.465 Atomic orbital electron populations 1.20243 0.86562 1.03878 1.02942 1.22322 0.97103 0.90096 0.97844 1.77254 0.86706 1.22650 1.26192 1.46173 1.07275 1.05465 1.60029 0.71923 1.22469 0.99498 0.85133 1.00421 1.20237 0.91828 0.96767 1.16543 1.19127 0.97994 0.87536 0.86300 1.44417 1.75929 1.11938 1.07014 1.17525 0.96849 0.83782 0.93839 1.19610 1.17683 0.94683 0.95986 1.19698 1.08025 0.96077 0.93901 1.17857 1.04293 0.85801 0.93780 1.41811 1.78798 1.11707 1.10914 1.16975 0.92926 0.89962 0.91229 1.19165 1.22606 1.17399 0.90269 0.91135 1.25735 0.93577 0.93938 1.00696 1.69886 1.15748 1.25076 1.32092 0.86401 0.80045 0.78829 0.82142 1.18741 1.20072 1.20400 1.20530 1.11682 0.96980 0.93365 0.90596 0.91111 0.89464 0.80623 0.92897 0.93236 0.77972 0.89685 0.89869 0.78390 0.80160 0.91606 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.26 36.01 0.37 -0.58 16 2 C 0.09 1.33 7.22 -82.40 -0.59 0.74 16 3 N -0.30 -4.33 12.70 33.67 0.43 -3.90 16 4 N -0.48 -5.42 7.36 30.45 0.22 -5.20 16 5 H 0.44 3.32 8.96 -182.61 -1.64 1.68 16 6 C 0.07 0.85 11.90 -17.22 -0.20 0.65 16 7 C -0.24 -3.40 5.47 -105.05 -0.57 -3.97 16 8 C 0.22 3.40 5.01 -5.19 -0.03 3.38 16 9 N -0.76 -14.46 5.73 -59.81 -0.34 -14.80 16 10 C 0.18 4.12 6.64 -83.77 -0.56 3.56 16 11 C -0.26 -5.74 9.31 -39.14 -0.36 -6.10 16 12 C -0.15 -3.49 9.86 -39.47 -0.39 -3.87 16 13 C 0.08 2.02 6.79 -83.22 -0.56 1.46 16 14 N -0.89 -18.26 8.98 32.75 0.29 -17.97 16 15 C 0.09 2.50 5.58 -106.66 -0.60 1.91 16 16 C -0.46 -12.20 8.50 -37.91 -0.32 -12.52 16 17 H 0.07 1.77 6.67 -52.49 -0.35 1.42 16 18 C 0.08 1.93 5.18 -17.33 -0.09 1.84 16 19 N -0.80 -21.06 10.88 55.55 0.60 -20.46 16 20 Si 0.90 19.06 29.59 -169.99 -5.03 14.03 16 21 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 24 C -0.20 -5.21 8.50 -38.75 -0.33 -5.54 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.09 1.15 7.96 -51.93 -0.41 0.74 16 28 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.05 0.83 7.94 -51.93 -0.41 0.42 16 30 H 0.05 0.77 7.93 -51.93 -0.41 0.36 16 31 H 0.39 7.42 8.47 -40.82 -0.35 7.08 16 32 H 0.08 1.72 6.69 -52.49 -0.35 1.37 16 33 H 0.08 1.70 8.06 -52.48 -0.42 1.27 16 34 H 0.39 7.83 7.04 -40.82 -0.29 7.55 16 35 H 0.37 6.48 8.83 -40.82 -0.36 6.12 16 36 H 0.27 6.62 8.30 -40.82 -0.34 6.28 16 37 H 0.12 3.21 6.14 -52.49 -0.32 2.89 16 LS Contribution 314.12 15.07 4.73 4.73 Total: -1.00 -30.43 314.12 -9.05 -39.48 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: -5.72 Total: 23.15 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -4.24 Total: -19.07 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 1.21 Total: -62.33 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.43 -9.05 -39.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127302482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.061 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds