Wall clock time and date at job start Mon Mar 30 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36881 * 126.39986 * 2 1 4 4 C 1.34666 * 106.82158 * 180.02562 * 3 2 1 5 5 N 1.34129 * 108.01702 * 359.77851 * 4 3 2 6 6 C 1.30493 * 109.25573 * 0.37017 * 5 4 3 7 7 C 1.50705 * 125.65125 * 179.89186 * 6 5 4 8 8 N 1.46500 * 109.47264 * 269.69325 * 7 6 5 9 9 C 1.39858 * 119.99769 * 179.97438 * 8 7 6 10 10 C 1.39598 * 119.84097 * 0.29158 * 9 8 7 11 11 C 1.38055 * 120.54989 * 180.26067 * 10 9 8 12 12 C 1.38734 * 120.21787 * 359.44603 * 11 10 9 13 13 N 1.38868 * 120.16303 * 180.25759 * 12 11 10 14 14 C 1.41560 * 119.67398 * 0.27321 * 12 11 10 15 15 C 1.41028 * 120.27008 * 180.02562 * 14 12 11 16 16 H 1.08003 * 119.99742 * 333.63639 * 15 14 12 17 17 C 1.39884 * 120.00073 * 153.62486 * 15 14 12 18 18 N 1.30895 * 120.00173 * 343.97429 * 17 15 14 19 19 Si 1.86803 * 119.99694 * 163.96985 * 17 15 14 20 20 H 1.48496 * 109.47096 * 90.00606 * 19 17 15 21 21 H 1.48501 * 109.46980 * 210.00142 * 19 17 15 22 22 H 1.48501 * 109.47439 * 330.00337 * 19 17 15 23 23 C 1.38006 * 119.83405 * 179.97438 * 9 8 7 24 24 H 1.09003 * 109.47065 * 269.98303 * 1 2 3 25 25 H 1.09004 * 109.47043 * 29.97477 * 1 2 3 26 26 H 1.08998 * 109.46844 * 149.97617 * 1 2 3 27 27 H 1.08003 * 126.58868 * 0.05389 * 3 2 1 28 28 H 1.07996 * 125.99030 * 180.02562 * 4 3 2 29 29 H 1.08998 * 109.47298 * 149.68682 * 7 6 5 30 30 H 1.09002 * 109.47037 * 29.69195 * 7 6 5 31 31 H 0.96997 * 119.99770 * 359.97438 * 8 7 6 32 32 H 1.08006 * 119.72503 * 0.02562 * 10 9 8 33 33 H 1.08004 * 119.89426 * 179.72417 * 11 10 9 34 34 H 0.96993 * 120.00290 * 359.97438 * 13 12 11 35 35 H 0.97002 * 119.99891 * 179.97438 * 13 12 11 36 36 H 0.97004 * 120.00145 * 179.97438 * 18 17 15 37 37 H 1.07991 * 120.11757 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5461 0.6505 -0.0006 5 7 3.5096 -0.6903 0.0040 6 6 2.2664 -1.0869 -0.0006 7 6 1.8018 -2.5206 0.0000 8 7 1.6500 -2.9853 -1.3810 9 6 1.2264 -4.2936 -1.6360 10 6 0.9433 -5.1518 -0.5721 11 6 0.5293 -6.4477 -0.8069 12 6 0.3790 -6.9080 -2.1070 13 7 -0.0426 -8.2101 -2.3419 14 6 0.6580 -6.0438 -3.1930 15 6 0.5089 -6.4984 -4.5197 16 1 0.6041 -7.5506 -4.7438 17 6 0.2377 -5.5865 -5.5451 18 7 -0.1853 -4.3822 -5.2552 19 14 0.4792 -6.0875 -7.3285 20 1 -0.7807 -6.6726 -7.8532 21 1 0.8432 -4.8936 -8.1331 22 1 1.5671 -7.0944 -7.4168 23 6 1.0841 -4.7277 -2.9383 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.9613 2.1345 0.0008 28 1 4.4369 1.2611 -0.0003 29 1 0.8437 -2.5919 0.5148 30 1 2.5369 -3.1405 0.5133 31 1 1.8434 -2.3856 -2.1185 32 1 1.0526 -4.8003 0.4433 33 1 0.3173 -7.1041 0.0242 34 1 -0.2325 -8.8004 -1.5961 35 1 -0.1472 -8.5293 -3.2519 36 1 -0.3731 -3.7497 -5.9663 37 1 1.2987 -4.0592 -3.7588 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127389259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:11 Heat of formation + Delta-G solvation = 90.686539 kcal Electronic energy + Delta-G solvation = -20005.680354 eV Core-core repulsion = 16976.628846 eV Total energy + Delta-G solvation = -3029.051508 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.02412 -37.93904 -35.41328 -33.96427 -33.45691 -32.18197 -29.78484 -29.40540 -27.31049 -26.68406 -24.87011 -24.39212 -21.34591 -21.24907 -19.81367 -19.57318 -17.17785 -17.10570 -15.95863 -15.76706 -15.44819 -14.95093 -14.68758 -14.63276 -14.17627 -13.59577 -13.08880 -13.02566 -12.85923 -12.69220 -12.40380 -12.12146 -11.87510 -11.71598 -11.35258 -11.12551 -10.97829 -10.39300 -9.94298 -9.90644 -9.79546 -9.57745 -9.35214 -9.05081 -8.39835 -7.80802 -7.23007 -6.62360 -5.56854 -4.07137 2.00953 2.80043 2.90611 3.13555 3.15917 3.17778 3.30344 3.46165 4.03595 4.43256 4.67931 4.71320 4.80479 4.83511 5.05790 5.33488 5.39157 5.42444 5.56022 5.79848 5.88952 6.01641 6.31176 6.34890 6.60372 6.78438 7.07626 7.13286 7.16628 7.30800 7.46594 7.66867 7.86095 7.97485 8.10432 8.17557 8.44503 8.70510 8.85633 8.92354 8.99054 9.25199 9.33077 10.36832 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019235 B = 0.004745 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.359471 B = 5899.465648 C = 6838.819715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.452 5.452 3 C -0.062 4.062 4 C -0.032 4.032 5 N -0.479 5.479 6 C 0.201 3.799 7 C 0.226 3.774 8 N -0.757 5.757 9 C 0.177 3.823 10 C -0.255 4.255 11 C -0.152 4.152 12 C 0.087 3.913 13 N -0.889 5.889 14 C 0.096 3.904 15 C -0.464 4.464 16 H 0.071 0.929 17 C 0.077 3.923 18 N -0.801 5.801 19 Si 0.901 3.099 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.197 4.197 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.173 0.827 28 H 0.168 0.832 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.390 0.610 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.374 0.626 35 H 0.389 0.611 36 H 0.274 0.726 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 8.302 7.285 11.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.135 5.135 3 C -0.195 4.195 4 C -0.181 4.181 5 N -0.198 5.198 6 C -0.061 4.061 7 C 0.099 3.901 8 N -0.394 5.394 9 C 0.080 3.920 10 C -0.279 4.279 11 C -0.176 4.176 12 C -0.014 4.014 13 N -0.431 5.431 14 C 0.091 3.909 15 C -0.495 4.495 16 H 0.089 0.911 17 C -0.139 4.139 18 N -0.428 5.428 19 Si 0.726 3.274 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.222 4.222 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.190 0.810 28 H 0.186 0.814 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.223 0.777 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.199 0.801 35 H 0.217 0.783 36 H 0.085 0.915 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.019 8.076 7.378 10.939 hybrid contribution -0.755 0.553 -1.150 1.483 sum -0.774 8.629 6.228 10.670 Atomic orbital electron populations 1.22122 0.76415 1.05350 1.03579 1.45357 1.07779 1.06593 1.53750 1.22695 0.91496 0.92519 1.12803 1.22315 0.96349 0.91311 1.08089 1.70290 1.18632 1.11840 1.19056 1.23484 0.85690 0.91119 1.05822 1.19214 0.99575 0.84074 0.87283 1.44251 1.79001 1.12332 1.03796 1.17463 0.97605 0.83037 0.93941 1.19596 1.18290 0.94873 0.95124 1.19694 1.08669 0.95813 0.93465 1.17873 1.03912 0.86633 0.93010 1.41813 1.80983 1.11735 1.08596 1.16957 0.91752 0.90903 0.91292 1.19124 1.44222 0.94525 0.91637 0.91076 1.25734 0.92666 0.94568 1.00892 1.69870 1.32687 1.05740 1.34498 0.86447 0.79421 0.79074 0.82469 1.19867 1.20401 1.18732 1.20466 1.10805 0.98163 0.92745 0.90512 0.89661 0.88545 0.81019 0.81431 0.92149 0.90365 0.77694 0.89667 0.89684 0.80085 0.78329 0.91505 0.86519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.79 59.85 0.65 1.30 16 2 N -0.45 -5.85 3.15 -121.27 -0.38 -6.23 16 3 C -0.06 -0.72 11.58 -16.56 -0.19 -0.92 16 4 C -0.03 -0.43 11.87 -17.81 -0.21 -0.65 16 5 N -0.48 -8.16 11.25 -10.82 -0.12 -8.28 16 6 C 0.20 3.18 7.27 -155.42 -1.13 2.05 16 7 C 0.23 3.73 4.99 -5.19 -0.03 3.70 16 8 N -0.76 -14.84 5.73 -59.81 -0.34 -15.18 16 9 C 0.18 4.10 6.64 -83.77 -0.56 3.54 16 10 C -0.25 -5.69 9.31 -39.14 -0.36 -6.05 16 11 C -0.15 -3.44 9.86 -39.47 -0.39 -3.83 16 12 C 0.09 2.08 6.79 -83.23 -0.56 1.52 16 13 N -0.89 -18.06 8.98 32.75 0.29 -17.76 16 14 C 0.10 2.54 5.57 -106.66 -0.59 1.95 16 15 C -0.46 -12.16 8.48 -37.91 -0.32 -12.48 16 16 H 0.07 1.77 6.71 -52.48 -0.35 1.42 16 17 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 18 N -0.80 -20.86 10.97 55.54 0.61 -20.25 16 19 Si 0.90 18.97 29.59 -169.99 -5.03 13.94 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 23 C -0.20 -5.11 8.49 -38.75 -0.33 -5.44 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.10 1.06 7.66 -51.93 -0.40 0.66 16 27 H 0.17 1.37 8.06 -52.48 -0.42 0.94 16 28 H 0.17 1.81 8.06 -52.49 -0.42 1.38 16 29 H 0.06 0.92 7.49 -51.93 -0.39 0.53 16 30 H 0.08 1.35 7.95 -51.93 -0.41 0.93 16 31 H 0.39 7.75 8.47 -40.82 -0.35 7.41 16 32 H 0.09 1.70 6.69 -52.48 -0.35 1.35 16 33 H 0.08 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.37 6.41 8.83 -40.82 -0.36 6.05 16 35 H 0.39 7.75 7.06 -40.82 -0.29 7.47 16 36 H 0.27 6.59 8.30 -40.82 -0.34 6.26 16 37 H 0.12 3.17 6.22 -52.49 -0.33 2.85 16 LS Contribution 313.63 15.07 4.73 4.73 Total: -1.00 -30.52 313.63 -8.84 -39.36 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: -4.47 Total: 23.12 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -4.12 Total: -13.44 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: 0.06 Total: -67.71 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.52 -8.84 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127389259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.046 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds