Wall clock time and date at job start Mon Mar 30 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36881 * 126.39986 * 2 1 4 4 C 1.34666 * 106.82158 * 180.02562 * 3 2 1 5 5 N 1.34129 * 108.01702 * 359.77851 * 4 3 2 6 6 C 1.30493 * 109.25573 * 0.37017 * 5 4 3 7 7 C 1.50705 * 125.65125 * 179.89186 * 6 5 4 8 8 N 1.46500 * 109.47264 * 269.69325 * 7 6 5 9 9 C 1.39858 * 119.99769 * 179.97438 * 8 7 6 10 10 C 1.39598 * 119.84097 * 0.29158 * 9 8 7 11 11 C 1.38055 * 120.54989 * 180.26067 * 10 9 8 12 12 C 1.38734 * 120.21787 * 359.44603 * 11 10 9 13 13 N 1.38868 * 120.16303 * 180.25759 * 12 11 10 14 14 C 1.41560 * 119.67398 * 0.27321 * 12 11 10 15 15 C 1.41028 * 120.27008 * 180.02562 * 14 12 11 16 16 H 1.08003 * 119.99742 * 333.63639 * 15 14 12 17 17 C 1.39884 * 120.00073 * 153.62486 * 15 14 12 18 18 N 1.30895 * 120.00173 * 343.97429 * 17 15 14 19 19 Si 1.86803 * 119.99694 * 163.96985 * 17 15 14 20 20 H 1.48496 * 109.47096 * 90.00606 * 19 17 15 21 21 H 1.48501 * 109.46980 * 210.00142 * 19 17 15 22 22 H 1.48501 * 109.47439 * 330.00337 * 19 17 15 23 23 C 1.38006 * 119.83405 * 179.97438 * 9 8 7 24 24 H 1.09003 * 109.47065 * 269.98303 * 1 2 3 25 25 H 1.09004 * 109.47043 * 29.97477 * 1 2 3 26 26 H 1.08998 * 109.46844 * 149.97617 * 1 2 3 27 27 H 1.08003 * 126.58868 * 0.05389 * 3 2 1 28 28 H 1.07996 * 125.99030 * 180.02562 * 4 3 2 29 29 H 1.08998 * 109.47298 * 149.68682 * 7 6 5 30 30 H 1.09002 * 109.47037 * 29.69195 * 7 6 5 31 31 H 0.96997 * 119.99770 * 359.97438 * 8 7 6 32 32 H 1.08006 * 119.72503 * 0.02562 * 10 9 8 33 33 H 1.08004 * 119.89426 * 179.72417 * 11 10 9 34 34 H 0.96993 * 120.00290 * 359.97438 * 13 12 11 35 35 H 0.97002 * 119.99891 * 179.97438 * 13 12 11 36 36 H 0.97004 * 120.00145 * 179.97438 * 18 17 15 37 37 H 1.07991 * 120.11757 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5461 0.6505 -0.0006 5 7 3.5096 -0.6903 0.0040 6 6 2.2664 -1.0869 -0.0006 7 6 1.8018 -2.5206 0.0000 8 7 1.6500 -2.9853 -1.3810 9 6 1.2264 -4.2936 -1.6360 10 6 0.9433 -5.1518 -0.5721 11 6 0.5293 -6.4477 -0.8069 12 6 0.3790 -6.9080 -2.1070 13 7 -0.0426 -8.2101 -2.3419 14 6 0.6580 -6.0438 -3.1930 15 6 0.5089 -6.4984 -4.5197 16 1 0.6041 -7.5506 -4.7438 17 6 0.2377 -5.5865 -5.5451 18 7 -0.1853 -4.3822 -5.2552 19 14 0.4792 -6.0875 -7.3285 20 1 -0.7807 -6.6726 -7.8532 21 1 0.8432 -4.8936 -8.1331 22 1 1.5671 -7.0944 -7.4168 23 6 1.0841 -4.7277 -2.9383 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.9613 2.1345 0.0008 28 1 4.4369 1.2611 -0.0003 29 1 0.8437 -2.5919 0.5148 30 1 2.5369 -3.1405 0.5133 31 1 1.8434 -2.3856 -2.1185 32 1 1.0526 -4.8003 0.4433 33 1 0.3173 -7.1041 0.0242 34 1 -0.2325 -8.8004 -1.5961 35 1 -0.1472 -8.5293 -3.2519 36 1 -0.3731 -3.7497 -5.9663 37 1 1.2987 -4.0592 -3.7588 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127389259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:10 Heat of formation + Delta-G solvation = 70.887279 kcal Electronic energy + Delta-G solvation = -20006.538914 eV Core-core repulsion = 16976.628846 eV Total energy + Delta-G solvation = -3029.910068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.06136 -39.71894 -37.02580 -35.31887 -34.94757 -33.76066 -31.30846 -31.07308 -28.61626 -27.80778 -26.67113 -25.88110 -23.06203 -22.32505 -21.50346 -20.83286 -18.94277 -18.32509 -17.51679 -17.24765 -16.92737 -16.44008 -16.36651 -15.73275 -15.63373 -14.80360 -14.47111 -14.32906 -14.19635 -13.84238 -13.72948 -13.61605 -13.50832 -13.24978 -13.09402 -12.86743 -12.68003 -12.11601 -11.79936 -11.47945 -11.17990 -10.99259 -10.91770 -10.60033 -9.44763 -9.42519 -9.13432 -8.49894 -7.32612 -5.99499 0.97349 1.13143 1.41303 1.49975 1.54557 1.65105 1.87189 2.05865 2.27535 2.92530 3.05581 3.41611 3.79462 3.85207 3.96007 3.98839 4.37040 4.38657 4.52934 4.59569 4.62003 4.68468 4.82351 4.86103 5.24005 5.31387 5.33003 5.42257 5.64863 5.81577 5.87114 6.06217 6.15177 6.15808 6.27154 6.56788 6.95030 7.04266 7.10818 7.12645 7.16033 7.47232 7.68919 8.51204 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019235 B = 0.004745 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.359471 B = 5899.465648 C = 6838.819715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.450 5.450 3 C -0.039 4.039 4 C -0.060 4.060 5 N -0.518 5.518 6 C 0.173 3.827 7 C 0.232 3.768 8 N -0.753 5.753 9 C 0.175 3.825 10 C -0.254 4.254 11 C -0.156 4.156 12 C 0.072 3.928 13 N -0.879 5.879 14 C 0.062 3.938 15 C -0.493 4.493 16 H 0.074 0.926 17 C 0.034 3.966 18 N -0.833 5.833 19 Si 0.972 3.028 20 H -0.264 1.264 21 H -0.275 1.275 22 H -0.262 1.262 23 C -0.222 4.222 24 H 0.099 0.901 25 H 0.111 0.889 26 H 0.078 0.922 27 H 0.216 0.784 28 H 0.189 0.811 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.385 0.615 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.391 0.609 35 H 0.390 0.610 36 H 0.278 0.722 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.068 9.228 8.089 12.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.132 5.132 3 C -0.174 4.174 4 C -0.208 4.208 5 N -0.238 5.238 6 C -0.089 4.089 7 C 0.106 3.894 8 N -0.388 5.388 9 C 0.075 3.925 10 C -0.278 4.278 11 C -0.180 4.180 12 C -0.030 4.030 13 N -0.423 5.423 14 C 0.056 3.944 15 C -0.524 4.524 16 H 0.092 0.908 17 C -0.178 4.178 18 N -0.461 5.461 19 Si 0.794 3.206 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.186 1.186 23 C -0.247 4.247 24 H 0.117 0.883 25 H 0.130 0.870 26 H 0.096 0.904 27 H 0.233 0.767 28 H 0.206 0.794 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.218 0.782 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.219 0.781 35 H 0.218 0.782 36 H 0.088 0.912 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.635 8.986 8.219 12.195 hybrid contribution -0.556 0.365 -1.267 1.431 sum -1.192 9.351 6.952 11.713 Atomic orbital electron populations 1.22353 0.74472 1.05787 1.05190 1.45562 1.08992 1.06133 1.52486 1.23376 0.90609 0.93820 1.09547 1.22820 0.98340 0.90437 1.09204 1.70194 1.19760 1.13978 1.19885 1.23130 0.86107 0.91298 1.08325 1.19177 1.00052 0.84940 0.85246 1.44286 1.78194 1.11066 1.05210 1.17539 0.97106 0.84517 0.93310 1.19931 1.17067 0.94732 0.96049 1.20059 1.07795 0.96367 0.93804 1.18050 1.04134 0.87723 0.93100 1.41692 1.80383 1.10785 1.09407 1.17328 0.92838 0.91787 0.92400 1.19387 1.45573 0.95014 0.92453 0.90773 1.26531 0.91973 0.94432 1.04888 1.69954 1.33531 1.06762 1.35832 0.85361 0.79451 0.78616 0.77142 1.18908 1.20046 1.18630 1.20411 1.12691 0.98260 0.93351 0.88284 0.87022 0.90357 0.76725 0.79414 0.90561 0.91246 0.78230 0.87091 0.86819 0.78139 0.78226 0.91165 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.06 10.79 127.77 1.38 2.44 16 2 N -0.45 -10.72 3.15 -537.60 -1.69 -12.41 16 3 C -0.04 -0.81 11.58 83.09 0.96 0.15 16 4 C -0.06 -1.55 11.87 83.52 0.99 -0.56 16 5 N -0.52 -17.49 11.25 -188.14 -2.12 -19.61 16 6 C 0.17 5.37 7.27 138.13 1.00 6.38 16 7 C 0.23 7.59 4.99 85.63 0.43 8.02 16 8 N -0.75 -29.95 5.73 -343.14 -1.97 -31.91 16 9 C 0.17 8.20 6.64 38.13 0.25 8.45 16 10 C -0.25 -11.10 9.31 22.55 0.21 -10.89 16 11 C -0.16 -6.86 9.86 22.34 0.22 -6.64 16 12 C 0.07 3.46 6.79 38.97 0.26 3.72 16 13 N -0.88 -35.12 8.98 -50.31 -0.45 -35.57 16 14 C 0.06 3.34 5.57 -21.18 -0.12 3.22 16 15 C -0.49 -26.50 8.48 23.35 0.20 -26.30 16 16 H 0.07 3.77 6.71 -2.91 -0.02 3.75 16 17 C 0.03 1.77 5.16 85.23 0.44 2.21 16 18 N -0.83 -44.75 10.97 21.82 0.24 -44.51 16 19 Si 0.97 39.53 29.59 68.60 2.03 41.56 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 21 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 23 C -0.22 -11.95 8.49 22.81 0.19 -11.76 16 24 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.08 1.63 7.66 -2.39 -0.02 1.61 16 27 H 0.22 2.38 8.06 -2.91 -0.02 2.36 16 28 H 0.19 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.08 2.23 7.49 -2.39 -0.02 2.21 16 30 H 0.07 2.38 7.95 -2.39 -0.02 2.36 16 31 H 0.39 15.86 8.47 -92.71 -0.79 15.08 16 32 H 0.11 4.21 6.69 -2.91 -0.02 4.19 16 33 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 34 H 0.39 12.79 8.83 -92.71 -0.82 11.97 16 35 H 0.39 15.47 7.06 -92.71 -0.65 14.81 16 36 H 0.28 13.74 8.30 -92.71 -0.77 12.97 16 37 H 0.09 5.35 6.22 -2.92 -0.02 5.33 16 Total: -1.00 -67.82 313.63 1.34 -66.49 By element: Atomic # 1 Polarization: 58.65 SS G_CDS: -1.13 Total: 57.52 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 6.42 Total: -21.55 kcal Atomic # 7 Polarization: -138.02 SS G_CDS: -5.99 Total: -144.01 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -67.82 1.34 -66.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127389259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.373 kcal (2) G-P(sol) polarization free energy of solvation -67.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds