Wall clock time and date at job start Mon Mar 30 2020 05:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.40085 * 126.03671 * 2 1 4 4 C 1.30837 * 108.20593 * 180.02562 * 3 2 1 5 5 C 1.39871 * 108.20234 * 359.78063 * 4 3 2 6 6 C 1.34947 * 126.03607 * 180.02562 * 2 1 3 7 7 C 1.50705 * 126.12931 * 359.93979 * 6 2 1 8 8 N 1.46499 * 109.46924 * 275.00496 * 7 6 2 9 9 C 1.39855 * 119.99309 * 179.97438 * 8 7 6 10 10 C 1.39599 * 119.84506 * 0.02562 * 9 8 7 11 11 C 1.38056 * 120.55230 * 179.72444 * 10 9 8 12 12 C 1.38742 * 120.21757 * 0.24675 * 11 10 9 13 13 N 1.38865 * 120.15858 * 179.97438 * 12 11 10 14 14 C 1.41553 * 119.67252 * 0.02562 * 12 11 10 15 15 C 1.41034 * 120.26539 * 180.02562 * 14 12 11 16 16 H 1.08004 * 119.99577 * 334.22403 * 15 14 12 17 17 C 1.39885 * 120.00305 * 154.22472 * 15 14 12 18 18 N 1.30901 * 119.99922 * 342.94415 * 17 15 14 19 19 Si 1.86796 * 120.00129 * 162.93943 * 17 15 14 20 20 H 1.48500 * 109.46828 * 94.63913 * 19 17 15 21 21 H 1.48500 * 109.47149 * 214.63906 * 19 17 15 22 22 H 1.48500 * 109.47249 * 334.64385 * 19 17 15 23 23 C 1.38007 * 119.83666 * 180.23142 * 9 8 7 24 24 H 1.09001 * 109.46734 * 269.97313 * 1 2 3 25 25 H 1.08997 * 109.47019 * 29.97782 * 1 2 3 26 26 H 1.09003 * 109.46876 * 149.97398 * 1 2 3 27 27 H 1.07994 * 125.89714 * 180.02562 * 4 3 2 28 28 H 1.07993 * 126.04569 * 180.23309 * 5 4 3 29 29 H 1.08998 * 109.46808 * 155.00067 * 7 6 2 30 30 H 1.09004 * 109.46724 * 35.00540 * 7 6 2 31 31 H 0.96998 * 120.00162 * 359.97438 * 8 7 6 32 32 H 1.08001 * 119.72144 * 359.97438 * 10 9 8 33 33 H 1.07993 * 119.89058 * 180.27505 * 11 10 9 34 34 H 0.96997 * 120.00507 * 0.02562 * 13 12 11 35 35 H 0.97005 * 119.99359 * 180.02562 * 13 12 11 36 36 H 0.96999 * 120.00314 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.11487 * 0.02601 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7322 -0.0006 5 6 3.5438 -0.6665 0.0042 6 6 2.2590 -1.0912 -0.0005 7 6 1.7974 -2.5259 0.0001 8 7 1.5343 -2.9535 1.3764 9 6 1.0917 -4.2555 1.6314 10 6 0.9022 -5.1448 0.5722 11 6 0.4711 -6.4350 0.8077 12 6 0.2162 -6.8605 2.1034 13 7 -0.2179 -8.1584 2.3389 14 6 0.3997 -5.9647 3.1840 15 6 0.1448 -6.3842 4.5062 16 1 -0.5543 -7.1859 4.6930 17 6 0.7975 -5.7619 5.5756 18 7 1.8685 -5.0412 5.3587 19 14 0.1408 -5.9594 7.3131 20 1 0.8477 -7.0791 7.9852 21 1 0.3667 -4.7039 8.0733 22 1 -1.3142 -6.2522 7.2621 23 6 0.8402 -4.6535 2.9287 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5143 27 1 4.4054 1.3711 -0.0003 28 1 4.4211 -1.2963 0.0085 29 1 2.5724 -3.1570 -0.4347 30 1 0.8843 -2.6140 -0.5886 31 1 1.6671 -2.3338 2.1107 32 1 1.0983 -4.8220 -0.4396 33 1 0.3323 -7.1155 -0.0193 34 1 -0.3432 -8.7701 1.5966 35 1 -0.3957 -8.4532 3.2458 36 1 2.3209 -4.6093 6.1001 37 1 0.9843 -3.9616 3.7453 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127389945.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:03 Heat of formation + Delta-G solvation = 105.066049 kcal Electronic energy + Delta-G solvation = -19978.287447 eV Core-core repulsion = 16949.859481 eV Total energy + Delta-G solvation = -3028.427966 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.15580 -37.97114 -35.50649 -33.49437 -33.22228 -32.23615 -30.12268 -29.44924 -27.04126 -26.65505 -24.89489 -24.40676 -21.28433 -21.07357 -19.81708 -19.58091 -17.15932 -16.91675 -15.81754 -15.59502 -15.42287 -14.92705 -14.67623 -14.40137 -14.16993 -13.80409 -13.21363 -12.87404 -12.66982 -12.42166 -12.35064 -12.02367 -11.85420 -11.75268 -11.39188 -11.14498 -11.00404 -10.63209 -10.41888 -9.98350 -9.82581 -9.42426 -9.23525 -9.06872 -8.48236 -7.85047 -7.27393 -6.65402 -5.61101 -4.09745 1.85496 2.56451 2.87071 2.87784 3.11912 3.15657 3.27277 3.42511 4.01050 4.46078 4.60351 4.72701 4.77975 5.16775 5.17493 5.36178 5.39456 5.44759 5.77296 5.80043 5.83747 5.88791 6.28414 6.31606 6.56560 6.70054 7.02228 7.05066 7.10284 7.27360 7.42744 7.63048 7.74915 7.82465 7.93686 8.06697 8.41174 8.66533 8.81419 8.88985 8.95748 9.21962 9.29820 10.33714 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019073 B = 0.004721 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.665942 B = 5928.901103 C = 6861.867287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.365 5.365 3 N -0.302 5.302 4 C 0.042 3.958 5 C -0.260 4.260 6 C 0.079 3.921 7 C 0.203 3.797 8 N -0.758 5.758 9 C 0.177 3.823 10 C -0.257 4.257 11 C -0.152 4.152 12 C 0.087 3.913 13 N -0.889 5.889 14 C 0.097 3.903 15 C -0.465 4.465 16 H 0.071 0.929 17 C 0.077 3.923 18 N -0.797 5.797 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.200 4.200 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.182 0.818 28 H 0.148 0.852 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.390 0.610 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.374 0.626 35 H 0.389 0.611 36 H 0.275 0.725 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 5.994 -7.449 9.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.148 5.148 3 N -0.124 5.124 4 C -0.144 4.144 5 C -0.290 4.290 6 C -0.049 4.049 7 C 0.076 3.924 8 N -0.394 5.394 9 C 0.079 3.921 10 C -0.280 4.280 11 C -0.176 4.176 12 C -0.014 4.014 13 N -0.431 5.431 14 C 0.092 3.908 15 C -0.496 4.496 16 H 0.089 0.911 17 C -0.139 4.139 18 N -0.424 5.424 19 Si 0.725 3.275 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.224 4.224 24 H 0.095 0.905 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.199 0.801 28 H 0.166 0.834 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.223 0.777 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.199 0.801 35 H 0.217 0.783 36 H 0.086 0.914 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.021 7.206 -7.519 10.464 hybrid contribution 0.397 -0.837 1.161 1.485 sum -0.624 6.369 -6.359 9.021 Atomic orbital electron populations 1.21872 0.74285 1.04203 1.03781 1.48506 1.06593 1.03340 1.56390 1.77312 1.01913 1.08197 1.24952 1.23802 0.95168 0.95095 1.00291 1.21324 0.96460 0.94941 1.16288 1.21308 0.91353 0.90620 1.01650 1.19500 0.99766 0.85933 0.87236 1.44260 1.78422 1.12367 1.04389 1.17464 0.97531 0.83178 0.93928 1.19583 1.18263 0.94909 0.95280 1.19695 1.08516 0.95868 0.93569 1.17867 1.04681 0.85624 0.93257 1.41820 1.80651 1.11433 1.09219 1.16960 0.92618 0.89970 0.91293 1.19134 1.22657 1.17249 0.90524 0.91053 1.25748 0.93416 0.93812 1.00905 1.69879 1.13451 1.25473 1.33569 0.86446 0.80411 0.78388 0.82253 1.19881 1.20316 1.18716 1.20458 1.12472 0.96699 0.92814 0.90489 0.89582 0.89233 0.80128 0.83431 0.90808 0.92465 0.77684 0.89719 0.89708 0.80071 0.78318 0.91380 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.10 11.27 59.85 0.67 1.78 16 2 N -0.37 -5.18 4.01 -63.88 -0.26 -5.44 16 3 N -0.30 -4.50 12.58 30.62 0.39 -4.12 16 4 C 0.04 0.54 12.03 -17.36 -0.21 0.34 16 5 C -0.26 -3.58 10.72 -40.01 -0.43 -4.01 16 6 C 0.08 1.14 6.30 -82.26 -0.52 0.63 16 7 C 0.20 3.09 5.07 -5.19 -0.03 3.06 16 8 N -0.76 -14.10 5.73 -59.81 -0.34 -14.45 16 9 C 0.18 3.97 6.64 -83.77 -0.56 3.41 16 10 C -0.26 -5.58 9.31 -39.14 -0.36 -5.94 16 11 C -0.15 -3.38 9.86 -39.46 -0.39 -3.77 16 12 C 0.09 2.05 6.79 -83.23 -0.56 1.49 16 13 N -0.89 -17.80 8.98 32.75 0.29 -17.51 16 14 C 0.10 2.52 5.58 -106.66 -0.59 1.93 16 15 C -0.46 -12.02 8.49 -37.91 -0.32 -12.35 16 16 H 0.07 1.75 6.69 -52.48 -0.35 1.40 16 17 C 0.08 1.94 5.14 -17.33 -0.09 1.85 16 18 N -0.80 -20.70 10.99 55.54 0.61 -20.09 16 19 Si 0.90 18.75 29.59 -169.99 -5.03 13.71 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 23 C -0.20 -5.08 8.50 -38.75 -0.33 -5.41 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.09 0.89 7.15 -51.93 -0.37 0.52 16 27 H 0.18 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.07 1.12 7.94 -51.93 -0.41 0.71 16 30 H 0.06 0.83 7.04 -51.93 -0.37 0.46 16 31 H 0.39 7.35 8.47 -40.82 -0.35 7.00 16 32 H 0.08 1.64 6.69 -52.49 -0.35 1.29 16 33 H 0.08 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.37 6.32 8.83 -40.82 -0.36 5.96 16 35 H 0.39 7.65 7.04 -40.82 -0.29 7.37 16 36 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 37 H 0.12 3.10 6.22 -52.49 -0.33 2.77 16 LS Contribution 313.72 15.07 4.73 4.73 Total: -1.00 -29.54 313.72 -7.75 -37.29 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -4.42 Total: 22.88 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -3.72 Total: -17.01 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.69 Total: -61.61 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.54 -7.75 -37.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127389945.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.359 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds