Wall clock time and date at job start Mon Mar 30 2020 05:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.40085 * 126.03671 * 2 1 4 4 C 1.30837 * 108.20593 * 180.02562 * 3 2 1 5 5 C 1.39871 * 108.20234 * 359.78063 * 4 3 2 6 6 C 1.34947 * 126.03607 * 180.02562 * 2 1 3 7 7 C 1.50705 * 126.12931 * 359.93979 * 6 2 1 8 8 N 1.46499 * 109.46924 * 275.00496 * 7 6 2 9 9 C 1.39855 * 119.99309 * 179.97438 * 8 7 6 10 10 C 1.39599 * 119.84506 * 0.02562 * 9 8 7 11 11 C 1.38056 * 120.55230 * 179.72444 * 10 9 8 12 12 C 1.38742 * 120.21757 * 0.24675 * 11 10 9 13 13 N 1.38865 * 120.15858 * 179.97438 * 12 11 10 14 14 C 1.41553 * 119.67252 * 0.02562 * 12 11 10 15 15 C 1.41034 * 120.26539 * 180.02562 * 14 12 11 16 16 H 1.08004 * 119.99577 * 334.22403 * 15 14 12 17 17 C 1.39885 * 120.00305 * 154.22472 * 15 14 12 18 18 N 1.30901 * 119.99922 * 342.94415 * 17 15 14 19 19 Si 1.86796 * 120.00129 * 162.93943 * 17 15 14 20 20 H 1.48500 * 109.46828 * 94.63913 * 19 17 15 21 21 H 1.48500 * 109.47149 * 214.63906 * 19 17 15 22 22 H 1.48500 * 109.47249 * 334.64385 * 19 17 15 23 23 C 1.38007 * 119.83666 * 180.23142 * 9 8 7 24 24 H 1.09001 * 109.46734 * 269.97313 * 1 2 3 25 25 H 1.08997 * 109.47019 * 29.97782 * 1 2 3 26 26 H 1.09003 * 109.46876 * 149.97398 * 1 2 3 27 27 H 1.07994 * 125.89714 * 180.02562 * 4 3 2 28 28 H 1.07993 * 126.04569 * 180.23309 * 5 4 3 29 29 H 1.08998 * 109.46808 * 155.00067 * 7 6 2 30 30 H 1.09004 * 109.46724 * 35.00540 * 7 6 2 31 31 H 0.96998 * 120.00162 * 359.97438 * 8 7 6 32 32 H 1.08001 * 119.72144 * 359.97438 * 10 9 8 33 33 H 1.07993 * 119.89058 * 180.27505 * 11 10 9 34 34 H 0.96997 * 120.00507 * 0.02562 * 13 12 11 35 35 H 0.97005 * 119.99359 * 180.02562 * 13 12 11 36 36 H 0.96999 * 120.00314 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.11487 * 0.02601 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7322 -0.0006 5 6 3.5438 -0.6665 0.0042 6 6 2.2590 -1.0912 -0.0005 7 6 1.7974 -2.5259 0.0001 8 7 1.5343 -2.9535 1.3764 9 6 1.0917 -4.2555 1.6314 10 6 0.9022 -5.1448 0.5722 11 6 0.4711 -6.4350 0.8077 12 6 0.2162 -6.8605 2.1034 13 7 -0.2179 -8.1584 2.3389 14 6 0.3997 -5.9647 3.1840 15 6 0.1448 -6.3842 4.5062 16 1 -0.5543 -7.1859 4.6930 17 6 0.7975 -5.7619 5.5756 18 7 1.8685 -5.0412 5.3587 19 14 0.1408 -5.9594 7.3131 20 1 0.8477 -7.0791 7.9852 21 1 0.3667 -4.7039 8.0733 22 1 -1.3142 -6.2522 7.2621 23 6 0.8402 -4.6535 2.9287 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5143 27 1 4.4054 1.3711 -0.0003 28 1 4.4211 -1.2963 0.0085 29 1 2.5724 -3.1570 -0.4347 30 1 0.8843 -2.6140 -0.5886 31 1 1.6671 -2.3338 2.1107 32 1 1.0983 -4.8220 -0.4396 33 1 0.3323 -7.1155 -0.0193 34 1 -0.3432 -8.7701 1.5966 35 1 -0.3957 -8.4532 3.2458 36 1 2.3209 -4.6093 6.1001 37 1 0.9843 -3.9616 3.7453 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127389945.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:03 Heat of formation + Delta-G solvation = 85.822398 kcal Electronic energy + Delta-G solvation = -19979.121914 eV Core-core repulsion = 16949.859481 eV Total energy + Delta-G solvation = -3029.262433 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.21212 -39.70020 -37.04645 -35.32162 -34.32982 -33.64387 -31.45483 -31.27711 -28.56819 -27.61984 -26.67728 -25.85569 -23.04386 -22.10270 -21.48787 -20.77292 -18.93140 -18.24341 -17.34051 -17.20842 -16.80493 -16.36184 -16.28845 -15.59054 -15.46201 -14.96266 -14.55621 -14.33123 -14.16939 -13.77141 -13.60748 -13.48651 -13.23441 -13.21174 -13.06297 -12.80273 -12.68020 -12.11340 -11.84336 -11.68929 -11.40395 -11.17395 -10.91137 -10.34719 -9.54612 -9.43157 -9.13535 -8.50337 -7.31679 -5.98867 0.75616 1.13329 1.41403 1.50266 1.54772 1.58852 1.65942 1.83016 2.27270 2.91799 3.05020 3.54659 3.69362 3.80004 3.97095 4.18255 4.30835 4.39614 4.55546 4.62506 4.67630 4.75179 4.80735 4.87591 5.21464 5.24735 5.33959 5.42851 5.65687 5.71505 5.87832 6.00156 6.07701 6.16486 6.27274 6.57406 6.70412 6.96289 7.05070 7.12906 7.17490 7.47780 7.69063 8.50693 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019073 B = 0.004721 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.665942 B = 5928.901103 C = 6861.867287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.371 5.371 3 N -0.326 5.326 4 C 0.043 3.957 5 C -0.267 4.267 6 C 0.067 3.933 7 C 0.207 3.793 8 N -0.753 5.753 9 C 0.176 3.824 10 C -0.253 4.253 11 C -0.157 4.157 12 C 0.071 3.929 13 N -0.880 5.880 14 C 0.061 3.939 15 C -0.493 4.493 16 H 0.074 0.926 17 C 0.035 3.965 18 N -0.832 5.832 19 Si 0.971 3.029 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.224 4.224 24 H 0.073 0.927 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.214 0.786 28 H 0.159 0.841 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.386 0.614 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.391 0.609 35 H 0.389 0.611 36 H 0.278 0.722 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 6.050 -8.477 10.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.155 5.155 3 N -0.149 5.149 4 C -0.142 4.142 5 C -0.297 4.297 6 C -0.062 4.062 7 C 0.082 3.918 8 N -0.388 5.388 9 C 0.076 3.924 10 C -0.277 4.277 11 C -0.181 4.181 12 C -0.031 4.031 13 N -0.423 5.423 14 C 0.056 3.944 15 C -0.524 4.524 16 H 0.092 0.908 17 C -0.178 4.178 18 N -0.460 5.460 19 Si 0.793 3.207 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.249 4.249 24 H 0.092 0.908 25 H 0.121 0.879 26 H 0.118 0.882 27 H 0.230 0.770 28 H 0.177 0.823 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.219 0.781 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.218 0.782 35 H 0.217 0.783 36 H 0.089 0.911 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.080 7.258 -8.583 11.292 hybrid contribution 0.442 -0.811 1.334 1.623 sum -0.638 6.446 -7.249 9.722 Atomic orbital electron populations 1.22077 0.73011 1.05604 1.04023 1.48746 1.07488 1.03019 1.56201 1.77281 1.02817 1.08920 1.25860 1.24355 0.95612 0.95297 0.98922 1.21619 0.96665 0.95616 1.15818 1.21257 0.91919 0.90354 1.02642 1.19554 1.00502 0.86546 0.85232 1.44283 1.77653 1.10968 1.05913 1.17512 0.96903 0.84780 0.93170 1.19936 1.16864 0.94594 0.96316 1.20070 1.07608 0.96605 0.93816 1.18056 1.04982 0.86654 0.93411 1.41708 1.80054 1.10600 1.09981 1.17329 0.93862 0.90870 0.92330 1.19392 1.23464 1.18219 0.91360 0.90800 1.26526 0.93280 0.93322 1.04632 1.69965 1.14619 1.26673 1.34752 0.85370 0.79685 0.78362 0.77286 1.19184 1.20057 1.18404 1.20418 1.14254 0.96661 0.93553 0.90795 0.87929 0.88167 0.76982 0.82290 0.90252 0.91182 0.78109 0.86874 0.86926 0.78160 0.78268 0.91148 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.94 11.27 127.77 1.44 3.38 16 2 N -0.37 -10.05 4.01 -356.00 -1.43 -11.47 16 3 N -0.33 -9.27 12.58 -57.03 -0.72 -9.99 16 4 C 0.04 1.04 12.03 85.24 1.03 2.06 16 5 C -0.27 -6.90 10.72 21.99 0.24 -6.67 16 6 C 0.07 1.84 6.30 41.41 0.26 2.10 16 7 C 0.21 5.95 5.07 85.63 0.43 6.38 16 8 N -0.75 -27.59 5.73 -343.14 -1.97 -29.55 16 9 C 0.18 7.85 6.64 38.13 0.25 8.10 16 10 C -0.25 -10.54 9.31 22.56 0.21 -10.33 16 11 C -0.16 -6.67 9.86 22.35 0.22 -6.45 16 12 C 0.07 3.33 6.79 38.97 0.26 3.60 16 13 N -0.88 -34.47 8.98 -50.31 -0.45 -34.92 16 14 C 0.06 3.25 5.58 -21.18 -0.12 3.13 16 15 C -0.49 -26.10 8.49 23.35 0.20 -25.90 16 16 H 0.07 3.70 6.69 -2.91 -0.02 3.68 16 17 C 0.04 1.80 5.14 85.23 0.44 2.23 16 18 N -0.83 -44.56 10.99 21.82 0.24 -44.32 16 19 Si 0.97 39.08 29.59 68.60 2.03 41.11 16 20 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 21 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 23 C -0.22 -11.68 8.50 22.81 0.19 -11.48 16 24 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.10 1.83 7.15 -2.39 -0.02 1.81 16 27 H 0.21 3.46 8.06 -2.91 -0.02 3.44 16 28 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 29 H 0.08 2.22 7.94 -2.39 -0.02 2.20 16 30 H 0.07 1.85 7.04 -2.39 -0.02 1.83 16 31 H 0.39 14.67 8.47 -92.71 -0.79 13.89 16 32 H 0.11 4.01 6.69 -2.91 -0.02 3.99 16 33 H 0.11 4.10 8.06 -2.91 -0.02 4.07 16 34 H 0.39 12.51 8.83 -92.71 -0.82 11.69 16 35 H 0.39 15.21 7.04 -92.70 -0.65 14.55 16 36 H 0.28 13.75 8.30 -92.71 -0.77 12.98 16 37 H 0.09 5.19 6.22 -2.91 -0.02 5.17 16 Total: -1.00 -63.76 313.72 1.64 -62.12 By element: Atomic # 1 Polarization: 58.00 SS G_CDS: -1.12 Total: 56.88 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 5.06 Total: -29.85 kcal Atomic # 7 Polarization: -125.93 SS G_CDS: -4.32 Total: -130.25 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -63.76 1.64 -62.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127389945.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.939 kcal (2) G-P(sol) polarization free energy of solvation -63.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds