Wall clock time and date at job start Mon Mar 30 2020 04:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 119.99949 * 2 1 4 4 H 1.48498 * 109.47253 * 269.99849 * 3 2 1 5 5 H 1.48496 * 109.47179 * 29.99976 * 3 2 1 6 6 H 1.48505 * 109.47400 * 150.00160 * 3 2 1 7 7 C 1.38814 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00453 * 197.02046 * 7 2 1 9 9 N 1.36940 * 119.99617 * 17.01578 * 7 2 1 10 10 C 1.47075 * 120.88276 * 206.58634 * 9 7 2 11 11 C 1.53240 * 108.52589 * 231.16719 * 10 9 7 12 12 N 1.46904 * 109.33778 * 306.16969 * 11 10 9 13 13 C 1.38272 * 111.00254 * 187.25048 * 12 11 10 14 14 C 1.36166 * 119.78393 * 359.97438 * 13 12 11 15 15 C 1.39955 * 120.19621 * 179.72021 * 14 13 12 16 16 C 1.36284 * 119.78165 * 0.27771 * 15 14 13 17 17 C 1.40789 * 119.49557 * 0.02562 * 16 15 14 18 18 N 1.32609 * 132.31244 * 179.97438 * 17 16 15 19 19 C 1.33663 * 109.20786 * 179.97438 * 18 17 16 20 20 C 1.34944 * 108.66858 * 0.02562 * 19 18 17 21 21 N 1.36749 * 119.78829 * 180.27358 * 13 12 11 22 22 C 1.46899 * 111.26795 * 63.10238 * 12 11 10 23 23 C 1.47079 * 120.87815 * 26.56931 * 9 7 2 24 24 H 0.97005 * 120.00141 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.63013 * 111.45683 * 10 9 7 26 26 H 1.08998 * 109.62720 * 350.87463 * 10 9 7 27 27 H 1.08989 * 109.49702 * 186.21336 * 11 10 9 28 28 H 1.08999 * 109.51435 * 66.13649 * 11 10 9 29 29 H 1.08003 * 119.89810 * 0.02562 * 14 13 12 30 30 H 1.08002 * 120.11345 * 180.29680 * 15 14 13 31 31 H 1.07995 * 120.25268 * 180.02562 * 16 15 14 32 32 H 1.08001 * 125.66614 * 179.97438 * 19 18 17 33 33 H 1.08001 * 126.42256 * 180.02562 * 20 19 18 34 34 H 1.09004 * 109.49254 * 56.85562 * 22 12 11 35 35 H 1.09002 * 109.49619 * 176.93519 * 22 12 11 36 36 H 1.09005 * 109.62875 * 248.54207 * 23 9 7 37 37 H 1.08996 * 109.63590 * 9.12380 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0548 -1.2225 0.2743 9 7 1.3705 -2.3622 -0.3460 10 6 1.8309 -3.6609 0.1686 11 6 2.0023 -4.6201 -1.0141 12 7 0.7547 -4.6657 -1.7883 13 6 0.8145 -5.6400 -2.7677 14 6 1.9387 -6.3967 -2.9012 15 6 2.0064 -7.3891 -3.8857 16 6 0.9447 -7.5930 -4.7155 17 6 -0.2097 -6.8000 -4.5717 18 7 -1.3644 -6.7778 -5.2235 19 6 -2.1465 -5.8286 -4.7003 20 6 -1.4809 -5.2278 -3.6918 21 7 -0.2533 -5.8333 -3.5998 22 6 0.4401 -3.3538 -2.3695 23 6 0.2046 -2.3426 -1.2424 24 1 -0.4850 0.8401 -0.0004 25 1 1.0920 -4.0628 0.8618 26 1 2.7856 -3.5348 0.6791 27 1 2.2363 -5.6176 -0.6424 28 1 2.8137 -4.2700 -1.6522 29 1 2.7787 -6.2337 -2.2422 30 1 2.8969 -7.9917 -3.9873 31 1 0.9885 -8.3570 -5.4775 32 1 -3.1450 -5.5827 -5.0304 33 1 -1.8464 -4.4218 -3.0727 34 1 1.2732 -3.0209 -2.9886 35 1 -0.4589 -3.4329 -2.9808 36 1 -0.6907 -2.6178 -0.6848 37 1 0.0841 -1.3450 -1.6647 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127693088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:03 Heat of formation + Delta-G solvation = 144.271455 kcal Electronic energy + Delta-G solvation = -21026.164453 eV Core-core repulsion = 17999.436562 eV Total energy + Delta-G solvation = -3026.727892 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.72611 -39.28583 -36.72897 -34.75937 -33.05327 -31.33227 -30.67410 -29.45613 -28.31595 -26.47928 -24.00876 -23.31416 -22.54985 -22.01375 -21.10876 -19.52810 -17.66887 -17.18187 -16.45655 -16.17955 -15.75643 -15.23286 -14.76051 -14.68821 -14.34836 -13.89167 -13.48973 -13.36345 -13.31254 -12.93756 -12.39948 -12.05923 -11.61078 -11.55185 -11.25163 -10.96012 -10.86740 -10.74215 -10.61840 -10.33736 -10.05888 -9.95235 -9.90523 -9.22305 -8.67756 -8.51226 -7.28636 -6.90347 -5.95342 -3.38131 0.92858 1.41844 2.53755 2.98782 3.28711 3.36185 3.37241 3.61495 3.89834 4.35775 4.39753 4.74580 4.88004 5.03140 5.18627 5.21198 5.35333 5.46141 5.49410 5.58127 5.67469 5.75921 5.78974 5.84928 5.93370 6.07182 6.21222 6.26690 6.31416 6.45162 6.60294 6.73838 6.82467 7.08627 7.22734 7.32722 7.39296 7.63936 8.00566 8.23835 9.01804 9.64360 10.21013 11.14075 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029926 B = 0.005002 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.428499 B = 5596.260702 C = 6161.976928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.005 3.995 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.259 4.259 8 H 0.070 0.930 9 N -0.594 5.594 10 C 0.146 3.854 11 C 0.044 3.956 12 N -0.482 5.482 13 C 0.314 3.686 14 C -0.235 4.235 15 C -0.059 4.059 16 C -0.136 4.136 17 C 0.248 3.752 18 N -0.507 5.507 19 C 0.026 3.974 20 C -0.094 4.094 21 N -0.369 5.369 22 C 0.023 3.977 23 C 0.178 3.822 24 H 0.256 0.744 25 H 0.030 0.970 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.152 0.848 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.179 0.821 33 H 0.184 0.816 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.031 0.969 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 -11.488 -6.146 13.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.388 4.388 8 H 0.087 0.913 9 N -0.317 5.317 10 C 0.019 3.981 11 C -0.084 4.084 12 N -0.197 5.197 13 C 0.110 3.890 14 C -0.260 4.260 15 C -0.084 4.084 16 C -0.157 4.157 17 C 0.004 3.996 18 N -0.228 5.228 19 C -0.124 4.124 20 C -0.224 4.224 21 N -0.044 5.044 22 C -0.102 4.102 23 C 0.052 3.948 24 H 0.066 0.934 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.170 0.830 30 H 0.156 0.844 31 H 0.162 0.838 32 H 0.196 0.804 33 H 0.201 0.799 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.451 -11.771 -6.352 13.454 hybrid contribution 0.941 1.581 0.324 1.868 sum 2.392 -10.191 -6.028 12.079 Atomic orbital electron populations 1.70001 1.05293 1.25857 1.53502 1.25051 0.95342 0.98558 1.00470 0.86246 0.79123 0.83363 0.77775 1.21347 1.21601 1.20325 1.19205 0.92745 0.84515 1.42356 0.91265 1.44134 1.34017 1.01412 1.52128 1.21046 0.98752 0.86268 0.92020 1.22986 0.87330 1.01137 0.96922 1.58344 1.35377 1.05897 1.20064 1.18938 0.85823 0.97047 0.87215 1.20765 0.96730 1.03182 1.05343 1.20803 0.98056 0.96155 0.93351 1.20016 0.90437 1.01793 1.03481 1.20958 0.96465 0.92616 0.89528 1.70813 1.01140 1.22778 1.28060 1.22429 1.00142 0.94679 0.95125 1.22819 0.85729 1.06609 1.07234 1.42880 1.11388 1.26332 1.23817 1.23381 1.00598 0.86507 0.99763 1.20927 0.89358 0.96520 0.88037 0.93358 0.95212 0.91415 0.90272 0.92873 0.83015 0.84442 0.83778 0.80438 0.79887 0.93702 0.90553 0.95093 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.03 11.15 55.49 0.62 -24.41 16 2 C 0.00 0.13 4.94 -17.43 -0.09 0.04 16 3 Si 0.91 20.81 29.59 -169.99 -5.03 15.78 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.26 -6.72 9.63 -15.06 -0.15 -6.86 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -13.97 3.04 -172.01 -0.52 -14.49 16 10 C 0.15 2.81 6.69 -3.60 -0.02 2.78 16 11 C 0.04 0.70 4.28 -3.70 -0.02 0.69 16 12 N -0.48 -8.23 4.60 -172.78 -0.80 -9.03 16 13 C 0.31 4.98 6.40 -152.95 -0.98 4.00 16 14 C -0.23 -3.11 8.77 -39.68 -0.35 -3.46 16 15 C -0.06 -0.68 10.05 -39.64 -0.40 -1.08 16 16 C -0.14 -1.77 10.10 -39.32 -0.40 -2.17 16 17 C 0.25 4.01 7.81 -155.99 -1.22 2.79 16 18 N -0.51 -8.47 11.32 -12.79 -0.14 -8.61 16 19 C 0.03 0.38 11.82 -17.92 -0.21 0.17 16 20 C -0.09 -1.45 9.96 -16.32 -0.16 -1.62 16 21 N -0.37 -6.03 2.91 -61.88 -0.18 -6.21 16 22 C 0.02 0.43 5.38 -3.70 -0.02 0.41 16 23 C 0.18 4.00 5.42 -3.60 -0.02 3.98 16 24 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.22 7.95 -51.93 -0.41 0.81 16 27 H 0.08 1.04 6.84 -51.93 -0.36 0.69 16 28 H 0.05 0.84 7.77 -51.93 -0.40 0.44 16 29 H 0.15 1.73 5.63 -52.48 -0.30 1.44 16 30 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.18 1.98 8.06 -52.49 -0.42 1.55 16 33 H 0.18 2.63 6.60 -52.49 -0.35 2.28 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.31 4.54 -51.93 -0.24 1.08 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.10 2.45 6.12 -51.93 -0.32 2.13 16 LS Contribution 295.43 15.07 4.45 4.45 Total: -1.00 -30.14 295.43 -10.08 -40.22 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.45 Total: 2.62 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -4.03 Total: -0.32 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -1.02 Total: -62.75 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.14 -10.08 -40.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127693088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.491 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds