Wall clock time and date at job start Mon Mar 30 2020 04:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 119.99949 * 2 1 4 4 H 1.48498 * 109.47253 * 269.99849 * 3 2 1 5 5 H 1.48496 * 109.47179 * 29.99976 * 3 2 1 6 6 H 1.48505 * 109.47400 * 150.00160 * 3 2 1 7 7 C 1.38814 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00453 * 197.02046 * 7 2 1 9 9 N 1.36940 * 119.99617 * 17.01578 * 7 2 1 10 10 C 1.47075 * 120.88276 * 206.58634 * 9 7 2 11 11 C 1.53240 * 108.52589 * 231.16719 * 10 9 7 12 12 N 1.46904 * 109.33778 * 306.16969 * 11 10 9 13 13 C 1.38272 * 111.00254 * 187.25048 * 12 11 10 14 14 C 1.36166 * 119.78393 * 359.97438 * 13 12 11 15 15 C 1.39955 * 120.19621 * 179.72021 * 14 13 12 16 16 C 1.36284 * 119.78165 * 0.27771 * 15 14 13 17 17 C 1.40789 * 119.49557 * 0.02562 * 16 15 14 18 18 N 1.32609 * 132.31244 * 179.97438 * 17 16 15 19 19 C 1.33663 * 109.20786 * 179.97438 * 18 17 16 20 20 C 1.34944 * 108.66858 * 0.02562 * 19 18 17 21 21 N 1.36749 * 119.78829 * 180.27358 * 13 12 11 22 22 C 1.46899 * 111.26795 * 63.10238 * 12 11 10 23 23 C 1.47079 * 120.87815 * 26.56931 * 9 7 2 24 24 H 0.97005 * 120.00141 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.63013 * 111.45683 * 10 9 7 26 26 H 1.08998 * 109.62720 * 350.87463 * 10 9 7 27 27 H 1.08989 * 109.49702 * 186.21336 * 11 10 9 28 28 H 1.08999 * 109.51435 * 66.13649 * 11 10 9 29 29 H 1.08003 * 119.89810 * 0.02562 * 14 13 12 30 30 H 1.08002 * 120.11345 * 180.29680 * 15 14 13 31 31 H 1.07995 * 120.25268 * 180.02562 * 16 15 14 32 32 H 1.08001 * 125.66614 * 179.97438 * 19 18 17 33 33 H 1.08001 * 126.42256 * 180.02562 * 20 19 18 34 34 H 1.09004 * 109.49254 * 56.85562 * 22 12 11 35 35 H 1.09002 * 109.49619 * 176.93519 * 22 12 11 36 36 H 1.09005 * 109.62875 * 248.54207 * 23 9 7 37 37 H 1.08996 * 109.63590 * 9.12380 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0548 -1.2225 0.2743 9 7 1.3705 -2.3622 -0.3460 10 6 1.8309 -3.6609 0.1686 11 6 2.0023 -4.6201 -1.0141 12 7 0.7547 -4.6657 -1.7883 13 6 0.8145 -5.6400 -2.7677 14 6 1.9387 -6.3967 -2.9012 15 6 2.0064 -7.3891 -3.8857 16 6 0.9447 -7.5930 -4.7155 17 6 -0.2097 -6.8000 -4.5717 18 7 -1.3644 -6.7778 -5.2235 19 6 -2.1465 -5.8286 -4.7003 20 6 -1.4809 -5.2278 -3.6918 21 7 -0.2533 -5.8333 -3.5998 22 6 0.4401 -3.3538 -2.3695 23 6 0.2046 -2.3426 -1.2424 24 1 -0.4850 0.8401 -0.0004 25 1 1.0920 -4.0628 0.8618 26 1 2.7856 -3.5348 0.6791 27 1 2.2363 -5.6176 -0.6424 28 1 2.8137 -4.2700 -1.6522 29 1 2.7787 -6.2337 -2.2422 30 1 2.8969 -7.9917 -3.9873 31 1 0.9885 -8.3570 -5.4775 32 1 -3.1450 -5.5827 -5.0304 33 1 -1.8464 -4.4218 -3.0727 34 1 1.2732 -3.0209 -2.9886 35 1 -0.4589 -3.4329 -2.9808 36 1 -0.6907 -2.6178 -0.6848 37 1 0.0841 -1.3450 -1.6647 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127693088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:01 Heat of formation + Delta-G solvation = 126.975760 kcal Electronic energy + Delta-G solvation = -21026.914451 eV Core-core repulsion = 17999.436562 eV Total energy + Delta-G solvation = -3027.477889 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.85398 -40.60428 -38.03053 -36.23123 -34.37117 -33.06159 -32.15434 -30.62235 -29.63213 -28.02634 -25.54583 -24.77328 -23.81790 -23.24590 -22.33207 -21.10221 -19.05212 -18.63856 -17.72742 -17.37787 -16.97159 -16.76370 -16.22400 -15.93244 -15.74532 -15.38502 -15.17101 -14.87382 -14.49859 -14.39782 -13.56911 -13.25743 -13.17254 -12.89224 -12.78940 -12.53475 -12.41864 -12.22721 -12.06007 -11.96770 -11.75796 -11.61571 -11.20488 -10.67405 -10.43974 -9.66784 -8.81813 -8.41696 -7.94176 -5.39100 -0.15177 0.34684 1.42377 1.46075 1.47939 1.56159 1.85820 2.45067 2.49239 2.70983 3.23112 3.37522 3.50841 3.68695 3.82328 3.93459 4.08383 4.18531 4.29968 4.32729 4.42513 4.45005 4.52042 4.66598 4.68596 4.77664 4.83296 5.01058 5.14346 5.22448 5.30197 5.38868 5.48590 5.54363 5.62614 5.73377 6.03399 6.14930 6.29970 6.86531 7.05777 7.74756 8.28372 9.13693 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029926 B = 0.005002 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.428499 B = 5596.260702 C = 6161.976928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.048 4.048 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.265 4.265 8 H 0.075 0.925 9 N -0.612 5.612 10 C 0.142 3.858 11 C 0.055 3.945 12 N -0.493 5.493 13 C 0.277 3.723 14 C -0.215 4.215 15 C -0.047 4.047 16 C -0.140 4.140 17 C 0.228 3.772 18 N -0.536 5.536 19 C 0.027 3.973 20 C -0.117 4.117 21 N -0.375 5.375 22 C 0.044 3.956 23 C 0.189 3.811 24 H 0.251 0.749 25 H 0.019 0.981 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.058 0.942 29 H 0.176 0.824 30 H 0.184 0.816 31 H 0.168 0.832 32 H 0.205 0.795 33 H 0.183 0.817 34 H 0.035 0.965 35 H 0.084 0.916 36 H 0.003 0.997 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.498 -13.467 -6.820 15.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.244 4.244 3 Si 0.796 3.204 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.394 4.394 8 H 0.093 0.907 9 N -0.336 5.336 10 C 0.016 3.984 11 C -0.073 4.073 12 N -0.208 5.208 13 C 0.075 3.925 14 C -0.240 4.240 15 C -0.071 4.071 16 C -0.161 4.161 17 C -0.015 4.015 18 N -0.257 5.257 19 C -0.123 4.123 20 C -0.247 4.247 21 N -0.051 5.051 22 C -0.082 4.082 23 C 0.063 3.937 24 H 0.060 0.940 25 H 0.037 0.963 26 H 0.098 0.902 27 H 0.134 0.866 28 H 0.077 0.923 29 H 0.193 0.807 30 H 0.202 0.798 31 H 0.186 0.814 32 H 0.222 0.778 33 H 0.200 0.800 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.021 0.979 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.738 -13.795 -7.028 15.927 hybrid contribution 0.287 2.062 0.522 2.146 sum 4.025 -11.734 -6.506 14.008 Atomic orbital electron populations 1.70158 1.06713 1.26034 1.55305 1.25786 0.96011 1.01545 1.01047 0.85266 0.78213 0.79479 0.77489 1.21355 1.22357 1.19024 1.19569 0.93155 0.85604 1.41110 0.90701 1.44397 1.33969 1.02473 1.52760 1.21211 0.98706 0.84999 0.93497 1.22887 0.87011 1.01928 0.95436 1.58250 1.36406 1.05050 1.21111 1.19125 0.86982 0.98020 0.88399 1.21268 0.95952 1.01789 1.04948 1.21292 0.98960 0.95357 0.91479 1.20501 0.89701 1.01641 1.04268 1.21593 0.97320 0.93080 0.89511 1.70808 1.01973 1.23856 1.29084 1.22903 1.01015 0.93852 0.94501 1.22961 0.86224 1.07399 1.08084 1.43007 1.11605 1.26456 1.24005 1.22934 1.00642 0.86897 0.97758 1.20581 0.88394 0.96034 0.88722 0.93980 0.96317 0.90195 0.86636 0.92335 0.80674 0.79844 0.81446 0.77807 0.79957 0.94641 0.89776 0.97852 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.86 11.15 21.65 0.24 -53.62 16 2 C -0.05 -2.60 4.94 84.86 0.42 -2.18 16 3 Si 0.97 43.32 29.59 68.60 2.03 45.35 16 4 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.30 -13.52 7.11 99.48 0.71 -12.82 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.26 -13.81 9.63 84.03 0.81 -13.01 16 8 H 0.08 3.74 7.88 -2.91 -0.02 3.72 16 9 N -0.61 -29.17 3.04 -698.12 -2.12 -31.29 16 10 C 0.14 5.31 6.69 86.35 0.58 5.89 16 11 C 0.05 1.60 4.28 86.38 0.37 1.97 16 12 N -0.49 -16.29 4.60 -700.56 -3.23 -19.51 16 13 C 0.28 8.25 6.40 131.26 0.84 9.09 16 14 C -0.21 -4.80 8.77 22.20 0.19 -4.61 16 15 C -0.05 -0.84 10.05 22.23 0.22 -0.62 16 16 C -0.14 -3.17 10.10 22.44 0.23 -2.94 16 17 C 0.23 7.00 7.81 134.03 1.05 8.05 16 18 N -0.54 -17.44 11.32 -194.39 -2.20 -19.64 16 19 C 0.03 0.78 11.82 83.66 0.99 1.77 16 20 C -0.12 -3.64 9.96 83.10 0.83 -2.81 16 21 N -0.38 -11.90 2.91 -349.69 -1.02 -12.92 16 22 C 0.04 1.65 5.38 86.39 0.46 2.12 16 23 C 0.19 8.86 5.42 86.35 0.47 9.33 16 24 H 0.25 14.05 8.31 -92.70 -0.77 13.28 16 25 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.08 2.76 7.95 -2.39 -0.02 2.74 16 27 H 0.12 2.56 6.84 -2.39 -0.02 2.54 16 28 H 0.06 1.67 7.77 -2.39 -0.02 1.65 16 29 H 0.18 3.04 5.63 -2.91 -0.02 3.02 16 30 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 31 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.21 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.18 5.46 6.60 -2.91 -0.02 5.44 16 34 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.08 3.00 4.54 -2.39 -0.01 2.98 16 36 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 37 H 0.07 3.46 6.12 -2.39 -0.01 3.45 16 Total: -1.00 -67.21 295.43 2.24 -64.96 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 1.08 Total: 14.62 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 7.46 Total: 12.05 kcal Atomic # 7 Polarization: -128.66 SS G_CDS: -8.32 Total: -136.98 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -67.21 2.24 -64.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127693088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.939 kcal (2) G-P(sol) polarization free energy of solvation -67.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds