Wall clock time and date at job start Mon Mar 30 2020 05:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47071 * 2 1 4 4 C 1.50700 * 109.46897 * 120.00417 * 2 1 3 5 5 H 1.08004 * 119.99960 * 120.00451 * 4 2 1 6 6 C 1.37877 * 120.00154 * 299.99980 * 4 2 1 7 7 N 1.31516 * 120.00245 * 180.02562 * 6 4 2 8 8 Si 1.86808 * 119.99745 * 0.02562 * 6 4 2 9 9 H 1.48490 * 109.46850 * 90.00195 * 8 6 4 10 10 H 1.48499 * 109.46904 * 210.00351 * 8 6 4 11 11 H 1.48497 * 109.46984 * 329.99889 * 8 6 4 12 12 N 1.46899 * 109.47086 * 239.99990 * 2 1 3 13 13 C 1.46900 * 111.00224 * 306.04870 * 12 2 1 14 14 C 1.37836 * 111.00054 * 70.00110 * 12 2 1 15 15 N 1.32491 * 120.85042 * 257.08727 * 14 12 2 16 16 C 1.33000 * 121.43376 * 180.02562 * 15 14 12 17 17 N 1.38312 * 118.61860 * 179.97438 * 16 15 14 18 18 N 1.31942 * 122.75923 * 0.02562 * 16 15 14 19 19 C 1.34116 * 120.40628 * 359.71480 * 18 16 15 20 20 C 1.40161 * 121.90317 * 179.75602 * 19 18 16 21 21 C 1.36338 * 119.59069 * 180.23000 * 20 19 18 22 22 C 1.39190 * 121.00639 * 0.27143 * 21 20 19 23 23 C 1.36408 * 120.89864 * 0.02562 * 22 21 20 24 24 C 1.39900 * 119.52726 * 359.97298 * 23 22 21 25 25 H 1.09007 * 109.47034 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47119 * 299.99743 * 1 2 3 27 27 H 1.08999 * 109.47183 * 59.99878 * 1 2 3 28 28 H 0.97001 * 119.99694 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47118 * 191.25789 * 13 12 2 30 30 H 1.09002 * 109.47095 * 311.25848 * 13 12 2 31 31 H 1.08998 * 109.47306 * 71.26478 * 13 12 2 32 32 H 0.97002 * 120.00197 * 359.97438 * 17 16 15 33 33 H 0.97001 * 120.00104 * 180.02562 * 17 16 15 34 34 H 1.07997 * 120.20534 * 0.50909 * 20 19 18 35 35 H 1.08001 * 119.49320 * 180.25758 * 21 20 19 36 36 H 1.08001 * 119.54927 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.23786 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2396 2.4827 7 7 2.1380 -0.8593 3.5565 8 14 0.6247 1.2789 2.6542 9 1 -0.8028 0.8724 2.6998 10 1 0.9758 1.9949 3.9068 11 1 0.8470 2.1763 1.4921 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0354 -1.3079 14 6 1.7694 0.0485 -2.3344 15 7 0.7723 -0.2691 -3.1470 16 6 0.5207 0.4375 -4.2453 17 7 -0.5348 0.0538 -5.0526 18 7 1.2364 1.4884 -4.5977 19 6 2.2649 1.8946 -3.8389 20 6 3.0490 3.0034 -4.1860 21 6 4.0866 3.3723 -3.3823 22 6 4.3840 2.6610 -2.2234 23 6 3.6449 1.5737 -1.8598 24 6 2.5731 1.1687 -2.6627 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9039 -0.5277 4.4375 29 1 1.9565 -2.5980 -2.0818 30 1 1.5328 -2.5529 -0.3536 31 1 0.3793 -1.9520 -1.5688 32 1 -1.0736 -0.7165 -4.8131 33 1 -0.7360 0.5545 -5.8586 34 1 2.8297 3.5648 -5.0822 35 1 4.6871 4.2294 -3.6491 36 1 5.2117 2.9737 -1.6041 37 1 3.8853 1.0293 -0.9586 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133218894.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:04 Heat of formation + Delta-G solvation = 97.242773 kcal Electronic energy + Delta-G solvation = -21198.125765 eV Core-core repulsion = 18169.358557 eV Total energy + Delta-G solvation = -3028.767208 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.08351 -38.04687 -37.52172 -33.93615 -33.30714 -32.14447 -30.83842 -29.90245 -28.81572 -26.04838 -25.36395 -23.52245 -23.12703 -21.70924 -20.05449 -18.50009 -17.89145 -16.89068 -16.39567 -15.75964 -15.69538 -15.27918 -14.65845 -14.59657 -14.11215 -13.72115 -13.64171 -13.26867 -12.36633 -12.35524 -12.30389 -12.14673 -11.88317 -11.63363 -11.27974 -11.14387 -10.78714 -10.54854 -10.38471 -10.21378 -9.93520 -9.70664 -9.33860 -8.78820 -8.75349 -8.60738 -8.19174 -7.38611 -6.23053 -4.24490 0.71835 1.23685 2.26817 3.16086 3.27522 3.29047 3.32931 3.39372 4.06674 4.25200 4.48711 4.59650 4.99327 5.06560 5.15557 5.22997 5.38456 5.58101 5.67088 5.97344 6.00956 6.06557 6.16530 6.17965 6.29381 6.34864 6.46698 6.52153 6.62753 6.72758 6.74353 6.89625 7.03147 7.13711 7.26920 7.41131 7.51294 7.68296 7.83226 8.39247 8.73717 8.82186 9.36014 10.88916 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018390 B = 0.007287 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.224868 B = 3841.487386 C = 4599.631837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.193 3.807 3 H 0.049 0.951 4 C -0.513 4.513 5 H 0.089 0.911 6 C 0.079 3.921 7 N -0.889 5.889 8 Si 0.879 3.121 9 H -0.277 1.277 10 H -0.292 1.292 11 H -0.267 1.267 12 N -0.462 5.462 13 C 0.033 3.967 14 C 0.453 3.547 15 N -0.613 5.613 16 C 0.590 3.410 17 N -0.826 5.826 18 N -0.605 5.605 19 C 0.217 3.783 20 C -0.141 4.141 21 C -0.063 4.063 22 C -0.170 4.170 23 C -0.026 4.026 24 C -0.205 4.205 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.030 0.970 28 H 0.267 0.733 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.410 0.590 33 H 0.410 0.590 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 4.748 -13.545 14.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.088 3.912 3 H 0.066 0.934 4 C -0.551 4.551 5 H 0.107 0.893 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.709 3.291 9 H -0.204 1.204 10 H -0.219 1.219 11 H -0.193 1.193 12 N -0.179 5.179 13 C -0.114 4.114 14 C 0.200 3.800 15 N -0.341 5.341 16 C 0.228 3.772 17 N -0.374 5.374 18 N -0.334 5.334 19 C 0.089 3.911 20 C -0.161 4.161 21 C -0.084 4.084 22 C -0.189 4.189 23 C -0.046 4.046 24 C -0.213 4.213 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.241 0.759 33 H 0.240 0.760 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.067 4.444 -13.874 14.608 hybrid contribution -1.094 0.916 0.395 1.481 sum -2.161 5.360 -13.479 14.666 Atomic orbital electron populations 1.22804 0.99915 1.01919 0.99377 1.19994 0.89850 0.95246 0.86061 0.93375 1.20783 1.32725 1.14417 0.87210 0.89334 1.24820 0.95521 0.96426 0.95651 1.69848 1.44831 1.39944 0.97997 0.86993 0.80819 0.83903 0.77403 1.20444 1.21926 1.19255 1.59334 1.54293 1.03953 1.00316 1.22307 0.98486 0.87780 1.02873 1.20403 0.83562 0.86019 0.90019 1.67857 1.21033 1.36729 1.08503 1.19078 0.86934 0.85740 0.85407 1.41680 1.32529 1.35856 1.27365 1.68244 1.11741 1.18314 1.35061 1.18479 0.90648 0.93211 0.88736 1.20445 0.96710 0.97349 1.01588 1.20932 0.95615 0.98197 0.93696 1.20834 1.02102 0.97562 0.98359 1.21163 0.91267 0.94468 0.97742 1.18990 1.01751 1.00458 1.00101 0.91717 0.93123 0.95064 0.92257 0.92856 0.89113 0.93083 0.75943 0.75966 0.85242 0.85749 0.85662 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.96 7.96 37.16 0.30 -3.66 16 2 C 0.19 4.37 1.42 -68.86 -0.10 4.28 16 3 H 0.05 1.14 5.78 -51.93 -0.30 0.84 16 4 C -0.51 -13.34 8.38 -34.44 -0.29 -13.63 16 5 H 0.09 2.49 7.44 -52.48 -0.39 2.10 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -25.59 13.96 55.43 0.77 -24.82 16 8 Si 0.88 20.96 24.37 -169.99 -4.14 16.82 16 9 H -0.28 -6.51 6.87 56.52 0.39 -6.13 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.23 6.53 56.52 0.37 -5.86 16 12 N -0.46 -9.50 4.09 -174.25 -0.71 -10.21 16 13 C 0.03 0.61 8.09 60.06 0.49 1.10 16 14 C 0.45 8.95 5.07 -155.07 -0.79 8.17 16 15 N -0.61 -11.40 8.52 -12.91 -0.11 -11.51 16 16 C 0.59 10.08 8.63 -322.99 -2.79 7.30 16 17 N -0.83 -10.14 9.06 29.74 0.27 -9.87 16 18 N -0.60 -10.73 10.46 -12.02 -0.13 -10.85 16 19 C 0.22 3.87 6.61 -84.86 -0.56 3.31 16 20 C -0.14 -2.07 10.01 -39.54 -0.40 -2.47 16 21 C -0.06 -0.82 9.95 -39.91 -0.40 -1.22 16 22 C -0.17 -2.42 9.96 -39.89 -0.40 -2.82 16 23 C -0.03 -0.45 8.66 -39.62 -0.34 -0.80 16 24 C -0.20 -3.87 5.61 -106.66 -0.60 -4.46 16 25 H 0.06 1.36 6.58 -51.93 -0.34 1.02 16 26 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 27 H 0.03 0.65 7.30 -51.93 -0.38 0.27 16 28 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.80 6.63 -51.93 -0.34 1.46 16 31 H 0.05 0.94 6.13 -51.93 -0.32 0.62 16 32 H 0.41 4.30 8.94 -40.82 -0.36 3.93 16 33 H 0.41 4.09 8.93 -40.82 -0.36 3.73 16 34 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.15 2.67 7.03 -52.49 -0.37 2.30 16 LS Contribution 295.42 15.07 4.45 4.45 Total: -1.00 -29.95 295.42 -9.78 -39.72 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.21 Total: 9.13 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -5.97 Total: -2.86 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: 0.09 Total: -67.26 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.14 Total: 16.82 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.95 -9.78 -39.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133218894.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.967 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds