Wall clock time and date at job start Mon Mar 30 2020 05:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47071 * 2 1 4 4 C 1.50700 * 109.46897 * 120.00417 * 2 1 3 5 5 H 1.08004 * 119.99960 * 120.00451 * 4 2 1 6 6 C 1.37877 * 120.00154 * 299.99980 * 4 2 1 7 7 N 1.31516 * 120.00245 * 180.02562 * 6 4 2 8 8 Si 1.86808 * 119.99745 * 0.02562 * 6 4 2 9 9 H 1.48490 * 109.46850 * 90.00195 * 8 6 4 10 10 H 1.48499 * 109.46904 * 210.00351 * 8 6 4 11 11 H 1.48497 * 109.46984 * 329.99889 * 8 6 4 12 12 N 1.46899 * 109.47086 * 239.99990 * 2 1 3 13 13 C 1.46900 * 111.00224 * 306.04870 * 12 2 1 14 14 C 1.37836 * 111.00054 * 70.00110 * 12 2 1 15 15 N 1.32491 * 120.85042 * 257.08727 * 14 12 2 16 16 C 1.33000 * 121.43376 * 180.02562 * 15 14 12 17 17 N 1.38312 * 118.61860 * 179.97438 * 16 15 14 18 18 N 1.31942 * 122.75923 * 0.02562 * 16 15 14 19 19 C 1.34116 * 120.40628 * 359.71480 * 18 16 15 20 20 C 1.40161 * 121.90317 * 179.75602 * 19 18 16 21 21 C 1.36338 * 119.59069 * 180.23000 * 20 19 18 22 22 C 1.39190 * 121.00639 * 0.27143 * 21 20 19 23 23 C 1.36408 * 120.89864 * 0.02562 * 22 21 20 24 24 C 1.39900 * 119.52726 * 359.97298 * 23 22 21 25 25 H 1.09007 * 109.47034 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47119 * 299.99743 * 1 2 3 27 27 H 1.08999 * 109.47183 * 59.99878 * 1 2 3 28 28 H 0.97001 * 119.99694 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47118 * 191.25789 * 13 12 2 30 30 H 1.09002 * 109.47095 * 311.25848 * 13 12 2 31 31 H 1.08998 * 109.47306 * 71.26478 * 13 12 2 32 32 H 0.97002 * 120.00197 * 359.97438 * 17 16 15 33 33 H 0.97001 * 120.00104 * 180.02562 * 17 16 15 34 34 H 1.07997 * 120.20534 * 0.50909 * 20 19 18 35 35 H 1.08001 * 119.49320 * 180.25758 * 21 20 19 36 36 H 1.08001 * 119.54927 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.23786 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2396 2.4827 7 7 2.1380 -0.8593 3.5565 8 14 0.6247 1.2789 2.6542 9 1 -0.8028 0.8724 2.6998 10 1 0.9758 1.9949 3.9068 11 1 0.8470 2.1763 1.4921 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0354 -1.3079 14 6 1.7694 0.0485 -2.3344 15 7 0.7723 -0.2691 -3.1470 16 6 0.5207 0.4375 -4.2453 17 7 -0.5348 0.0538 -5.0526 18 7 1.2364 1.4884 -4.5977 19 6 2.2649 1.8946 -3.8389 20 6 3.0490 3.0034 -4.1860 21 6 4.0866 3.3723 -3.3823 22 6 4.3840 2.6610 -2.2234 23 6 3.6449 1.5737 -1.8598 24 6 2.5731 1.1687 -2.6627 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9039 -0.5277 4.4375 29 1 1.9565 -2.5980 -2.0818 30 1 1.5328 -2.5529 -0.3536 31 1 0.3793 -1.9520 -1.5688 32 1 -1.0736 -0.7165 -4.8131 33 1 -0.7360 0.5545 -5.8586 34 1 2.8297 3.5648 -5.0822 35 1 4.6871 4.2294 -3.6491 36 1 5.2117 2.9737 -1.6041 37 1 3.8853 1.0293 -0.9586 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133218894.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:03 Heat of formation + Delta-G solvation = 78.327514 kcal Electronic energy + Delta-G solvation = -21198.945993 eV Core-core repulsion = 18169.358557 eV Total energy + Delta-G solvation = -3029.587436 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.41503 -39.55620 -38.74726 -35.46325 -34.66459 -33.84689 -32.07032 -31.61682 -30.05697 -27.53097 -27.31416 -24.96397 -24.36949 -23.11524 -21.64303 -19.73810 -19.20431 -18.74629 -17.81979 -17.43579 -16.81903 -16.58495 -16.17154 -16.01084 -15.40169 -15.31543 -15.13027 -14.75491 -14.23382 -14.04955 -13.63512 -13.52310 -13.36581 -13.18657 -12.85104 -12.55112 -12.45856 -12.16215 -11.94947 -11.73225 -11.56982 -11.29373 -11.06769 -10.82551 -10.14492 -9.83880 -9.68934 -8.64423 -8.33048 -6.37561 -0.59305 -0.00497 0.97045 1.26145 1.32996 1.40532 2.12824 2.21273 2.25774 2.63433 3.00402 3.19694 3.31999 3.76391 3.81215 4.09860 4.20743 4.29834 4.30476 4.42156 4.42525 4.51075 4.63094 4.73583 4.79292 4.90038 5.10591 5.11121 5.17066 5.32932 5.39243 5.41437 5.57424 5.64157 5.92174 6.00719 6.09231 6.41269 6.46435 6.48359 6.68011 7.25924 7.49933 8.82461 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018390 B = 0.007287 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.224868 B = 3841.487386 C = 4599.631837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.203 3.797 3 H 0.041 0.959 4 C -0.506 4.506 5 H 0.055 0.945 6 C 0.032 3.968 7 N -0.934 5.934 8 Si 0.932 3.068 9 H -0.268 1.268 10 H -0.291 1.291 11 H -0.258 1.258 12 N -0.472 5.472 13 C 0.041 3.959 14 C 0.433 3.567 15 N -0.618 5.618 16 C 0.572 3.428 17 N -0.805 5.805 18 N -0.608 5.608 19 C 0.196 3.804 20 C -0.143 4.143 21 C -0.048 4.048 22 C -0.155 4.155 23 C -0.056 4.056 24 C -0.225 4.225 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.269 0.731 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.420 0.580 33 H 0.422 0.578 34 H 0.152 0.848 35 H 0.171 0.829 36 H 0.153 0.847 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 7.068 -15.541 17.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.098 3.902 3 H 0.059 0.941 4 C -0.545 4.545 5 H 0.073 0.927 6 C -0.168 4.168 7 N -0.573 5.573 8 Si 0.760 3.240 9 H -0.195 1.195 10 H -0.218 1.218 11 H -0.182 1.182 12 N -0.189 5.189 13 C -0.106 4.106 14 C 0.180 3.820 15 N -0.346 5.346 16 C 0.210 3.790 17 N -0.355 5.355 18 N -0.337 5.337 19 C 0.068 3.932 20 C -0.163 4.163 21 C -0.068 4.068 22 C -0.174 4.174 23 C -0.076 4.076 24 C -0.233 4.233 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.252 0.748 33 H 0.255 0.745 34 H 0.170 0.830 35 H 0.189 0.811 36 H 0.170 0.830 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.339 6.753 -15.929 17.353 hybrid contribution -0.924 0.206 0.885 1.296 sum -2.263 6.959 -15.044 16.729 Atomic orbital electron populations 1.22672 0.98979 1.02144 0.99350 1.19675 0.90318 0.94424 0.85829 0.94147 1.20896 1.31535 1.13247 0.88796 0.92664 1.25492 0.96848 0.99108 0.95330 1.69970 1.46817 1.41901 0.98597 0.86108 0.79550 0.80796 0.77545 1.19452 1.21767 1.18247 1.59202 1.55159 1.04321 1.00216 1.22217 0.98849 0.87299 1.02242 1.20406 0.84674 0.86925 0.89964 1.67794 1.20878 1.36989 1.08966 1.19436 0.88019 0.85869 0.85698 1.41626 1.31006 1.35931 1.26930 1.68314 1.11909 1.18430 1.35020 1.18950 0.91373 0.94284 0.88616 1.20815 0.96497 0.96373 1.02591 1.21404 0.94829 0.98566 0.92039 1.21231 1.01537 0.95837 0.98767 1.21101 0.92526 0.96303 0.97719 1.19175 1.02371 1.00676 1.01097 0.91425 0.93710 0.94263 0.92133 0.91575 0.90892 0.92675 0.74829 0.74487 0.83010 0.81115 0.82955 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.45 7.96 71.98 0.57 -6.88 16 2 C 0.20 9.32 1.42 44.17 0.06 9.39 16 3 H 0.04 1.93 5.78 -2.39 -0.01 1.92 16 4 C -0.51 -27.18 8.38 25.60 0.21 -26.96 16 5 H 0.06 3.27 7.44 -2.91 -0.02 3.25 16 6 C 0.03 1.74 5.45 84.65 0.46 2.21 16 7 N -0.93 -55.22 13.96 21.45 0.30 -54.92 16 8 Si 0.93 43.20 24.37 68.60 1.67 44.87 16 9 H -0.27 -11.97 6.87 99.48 0.68 -11.29 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 11 H -0.26 -11.46 6.53 99.48 0.65 -10.81 16 12 N -0.47 -19.79 4.09 -705.21 -2.89 -22.68 16 13 C 0.04 1.57 8.09 127.69 1.03 2.60 16 14 C 0.43 17.13 5.07 134.08 0.68 17.81 16 15 N -0.62 -22.59 8.52 -194.76 -1.66 -24.25 16 16 C 0.57 18.78 8.63 261.55 2.26 21.03 16 17 N -0.80 -18.22 9.06 -59.83 -0.54 -18.76 16 18 N -0.61 -20.52 10.46 -191.93 -2.01 -22.53 16 19 C 0.20 6.65 6.61 40.09 0.27 6.92 16 20 C -0.14 -3.73 10.01 22.29 0.22 -3.51 16 21 C -0.05 -1.03 9.95 22.06 0.22 -0.81 16 22 C -0.16 -4.00 9.96 22.07 0.22 -3.78 16 23 C -0.06 -1.92 8.66 22.25 0.19 -1.72 16 24 C -0.22 -8.39 5.61 -21.18 -0.12 -8.51 16 25 H 0.07 2.83 6.58 -2.38 -0.02 2.81 16 26 H 0.04 1.96 3.27 -2.39 -0.01 1.96 16 27 H 0.04 1.60 7.30 -2.39 -0.02 1.59 16 28 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.07 3.03 6.63 -2.39 -0.02 3.01 16 31 H 0.05 2.04 6.13 -2.39 -0.01 2.02 16 32 H 0.42 7.98 8.94 -92.71 -0.83 7.15 16 33 H 0.42 7.46 8.93 -92.71 -0.83 6.64 16 34 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 35 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 36 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 37 H 0.12 4.71 7.03 -2.91 -0.02 4.69 16 Total: -1.00 -65.85 295.42 0.55 -65.29 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -0.60 Total: 25.18 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 6.28 Total: 7.79 kcal Atomic # 7 Polarization: -136.34 SS G_CDS: -6.80 Total: -143.13 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.67 Total: 44.87 kcal Total: -65.85 0.55 -65.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133218894.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.619 kcal (2) G-P(sol) polarization free energy of solvation -65.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds