Wall clock time and date at job start Mon Mar 30 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46916 * 2 1 4 4 C 1.50700 * 109.46999 * 240.00427 * 2 1 3 5 5 H 1.08001 * 119.99870 * 245.51424 * 4 2 1 6 6 C 1.37880 * 120.00224 * 65.51862 * 4 2 1 7 7 N 1.31517 * 119.99596 * 9.16653 * 6 4 2 8 8 Si 1.86794 * 119.99908 * 189.16057 * 6 4 2 9 9 H 1.48504 * 109.46693 * 94.99813 * 8 6 4 10 10 H 1.48504 * 109.47323 * 214.98935 * 8 6 4 11 11 H 1.48492 * 109.47567 * 334.99645 * 8 6 4 12 12 N 1.46895 * 109.47268 * 120.00122 * 2 1 3 13 13 C 1.46894 * 111.00122 * 182.36617 * 12 2 1 14 14 C 1.37832 * 111.00077 * 306.32463 * 12 2 1 15 15 N 1.32492 * 120.84599 * 296.37993 * 14 12 2 16 16 C 1.33004 * 121.43102 * 179.97438 * 15 14 12 17 17 N 1.38311 * 118.62088 * 180.02562 * 16 15 14 18 18 N 1.31944 * 122.75904 * 0.02562 * 16 15 14 19 19 C 1.34117 * 120.40962 * 359.68642 * 18 16 15 20 20 C 1.40156 * 121.90448 * 179.72523 * 19 18 16 21 21 C 1.36341 * 119.59114 * 180.26298 * 20 19 18 22 22 C 1.39192 * 121.00642 * 0.30142 * 21 20 19 23 23 C 1.36418 * 120.89713 * 0.02562 * 22 21 20 24 24 C 1.39901 * 119.52693 * 359.96911 * 23 22 21 25 25 H 1.08995 * 109.47091 * 304.48126 * 1 2 3 26 26 H 1.09001 * 109.47094 * 64.47665 * 1 2 3 27 27 H 1.08994 * 109.46971 * 184.47579 * 1 2 3 28 28 H 0.97001 * 119.99263 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47031 * 187.89999 * 13 12 2 30 30 H 1.08996 * 109.47522 * 307.90069 * 13 12 2 31 31 H 1.09006 * 109.47106 * 67.90373 * 13 12 2 32 32 H 0.97000 * 120.00024 * 359.97438 * 17 16 15 33 33 H 0.97003 * 120.00022 * 180.02562 * 17 16 15 34 34 H 1.07994 * 120.21019 * 0.54060 * 20 19 18 35 35 H 1.07993 * 119.49730 * 180.28061 * 21 20 19 36 36 H 1.07995 * 119.54904 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.23763 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5778 -1.6374 -1.1340 6 6 1.7956 -0.1766 -2.4796 7 7 1.2942 1.0339 -2.5931 8 14 2.1873 -1.1728 -4.0104 9 1 0.9631 -1.8772 -4.4692 10 1 2.6668 -0.2644 -5.0829 11 1 3.2431 -2.1686 -3.6964 12 7 2.0197 -0.6925 1.1994 13 6 3.4870 -0.6632 1.2619 14 6 1.4658 -0.1546 2.3411 15 7 1.7083 1.1011 2.6873 16 6 1.1796 1.6321 3.7862 17 7 1.4713 2.9490 4.0920 18 7 0.3884 0.9553 4.5967 19 6 0.0769 -0.3219 4.3313 20 6 -0.7556 -1.0717 5.1733 21 6 -1.0372 -2.3686 4.8608 22 6 -0.5052 -2.9630 3.7202 23 6 0.3139 -2.2637 2.8829 24 6 0.6225 -0.9307 3.1748 25 1 -0.3633 0.5818 0.8471 26 1 -0.3633 0.4428 -0.9274 27 1 -0.3633 -1.0245 0.0802 28 1 1.1273 1.4092 -3.4719 29 1 3.8286 -1.2991 2.0788 30 1 3.8982 -1.0285 0.3209 31 1 3.8231 0.3596 1.4327 32 1 2.0510 3.4651 3.5103 33 1 1.0967 3.3563 4.8888 34 1 -1.1752 -0.6237 6.0619 35 1 -1.6825 -2.9435 5.5083 36 1 -0.7434 -3.9921 3.4954 37 1 0.7204 -2.7353 2.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133219067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:06 Heat of formation + Delta-G solvation = 86.756633 kcal Electronic energy + Delta-G solvation = -21020.803150 eV Core-core repulsion = 17991.581229 eV Total energy + Delta-G solvation = -3029.221921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.97638 -37.76014 -37.30427 -33.77755 -33.27245 -32.03483 -30.71128 -29.47751 -28.85497 -25.99319 -24.65862 -23.45382 -23.05539 -21.68241 -20.09298 -18.55149 -17.68877 -16.64946 -16.15014 -15.68657 -15.38672 -15.17093 -14.58077 -14.33503 -14.02764 -13.74574 -13.57527 -13.04484 -12.38816 -12.24237 -12.14377 -11.91222 -11.40212 -11.22166 -11.01712 -10.74093 -10.54716 -10.51791 -10.39993 -10.26872 -9.99040 -9.84413 -9.18956 -8.70638 -8.58425 -8.54906 -7.75069 -7.49328 -6.12002 -4.14563 0.72020 1.26596 2.30221 3.27134 3.34539 3.36704 3.40053 3.44376 4.19230 4.42247 4.52295 4.65900 5.01600 5.20887 5.22477 5.28786 5.40236 5.60897 5.72536 6.01079 6.06247 6.26315 6.29426 6.46607 6.58444 6.64225 6.67802 6.72650 6.85478 6.90690 7.05249 7.27157 7.30346 7.45143 7.52157 7.66757 7.74781 7.88835 8.06925 8.40926 8.77805 8.90495 9.49170 10.97097 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021297 B = 0.006091 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.416647 B = 4595.683508 C = 5326.543974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.221 3.779 3 H 0.028 0.972 4 C -0.511 4.511 5 H 0.067 0.933 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.272 1.272 12 N -0.496 5.496 13 C 0.042 3.958 14 C 0.466 3.534 15 N -0.600 5.600 16 C 0.584 3.416 17 N -0.825 5.825 18 N -0.597 5.597 19 C 0.211 3.789 20 C -0.139 4.139 21 C -0.066 4.066 22 C -0.171 4.171 23 C -0.019 4.019 24 C -0.192 4.192 25 H 0.004 0.996 26 H 0.074 0.926 27 H 0.039 0.961 28 H 0.262 0.738 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.034 0.966 32 H 0.412 0.588 33 H 0.410 0.590 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.402 -3.042 12.593 13.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.117 3.883 3 H 0.045 0.955 4 C -0.549 4.549 5 H 0.086 0.914 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.197 1.197 12 N -0.221 5.221 13 C -0.105 4.105 14 C 0.215 3.785 15 N -0.324 5.324 16 C 0.223 3.777 17 N -0.373 5.373 18 N -0.325 5.325 19 C 0.082 3.918 20 C -0.158 4.158 21 C -0.087 4.087 22 C -0.190 4.190 23 C -0.039 4.039 24 C -0.201 4.201 25 H 0.023 0.977 26 H 0.093 0.907 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.242 0.758 33 H 0.240 0.760 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.425 -2.392 12.711 13.013 hybrid contribution 0.202 0.061 -1.003 1.025 sum -1.222 -2.332 11.708 12.001 Atomic orbital electron populations 1.21803 0.97966 0.99060 0.99926 1.19443 0.91789 0.93431 0.83640 0.95469 1.21005 1.36258 1.08269 0.89365 0.91449 1.24929 0.95240 0.94649 0.99074 1.69989 1.44522 1.14077 1.23985 0.86493 0.78609 0.79951 0.82435 1.20612 1.21359 1.19699 1.60323 1.08297 1.53120 1.00335 1.22244 0.85484 1.00091 1.02724 1.20505 0.84666 0.84574 0.88771 1.68039 1.30388 1.15476 1.18542 1.19149 0.86267 0.87138 0.85121 1.41729 1.56060 1.08627 1.30909 1.68239 1.22334 1.08414 1.33471 1.18545 0.92935 0.88869 0.91413 1.20455 1.00891 0.94091 1.00410 1.20908 0.97166 0.94393 0.96251 1.20829 1.01235 1.00661 0.96313 1.21044 0.93132 0.91868 0.97900 1.19147 1.04941 0.97350 0.98621 0.97697 0.90677 0.94154 0.92795 0.93426 0.89001 0.94739 0.75751 0.76016 0.85269 0.85825 0.85852 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.72 37.16 0.32 -2.85 16 2 C 0.22 5.49 1.77 -68.87 -0.12 5.37 16 3 H 0.03 0.78 8.03 -51.93 -0.42 0.36 16 4 C -0.51 -13.37 7.62 -34.44 -0.26 -13.63 16 5 H 0.07 1.73 7.14 -52.49 -0.37 1.35 16 6 C 0.06 1.70 5.17 -17.82 -0.09 1.61 16 7 N -0.89 -24.98 12.15 55.43 0.67 -24.31 16 8 Si 0.90 20.62 29.55 -169.99 -5.02 15.60 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.50 -10.64 3.87 -174.26 -0.67 -11.31 16 13 C 0.04 0.81 9.35 60.06 0.56 1.37 16 14 C 0.47 9.64 3.76 -155.07 -0.58 9.06 16 15 N -0.60 -12.35 9.71 -12.91 -0.13 -12.48 16 16 C 0.58 10.79 8.63 -322.99 -2.79 8.01 16 17 N -0.83 -11.42 9.06 29.74 0.27 -11.15 16 18 N -0.60 -11.00 10.46 -12.02 -0.13 -11.12 16 19 C 0.21 3.81 6.61 -84.86 -0.56 3.25 16 20 C -0.14 -2.03 10.01 -39.55 -0.40 -2.42 16 21 C -0.07 -0.83 9.95 -39.91 -0.40 -1.22 16 22 C -0.17 -2.29 9.96 -39.88 -0.40 -2.69 16 23 C -0.02 -0.31 9.58 -39.62 -0.38 -0.69 16 24 C -0.19 -3.63 5.76 -106.65 -0.61 -4.24 16 25 H 0.00 0.10 7.25 -51.93 -0.38 -0.28 16 26 H 0.07 1.99 6.80 -51.93 -0.35 1.64 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.82 6.52 -51.93 -0.34 1.49 16 31 H 0.03 0.69 7.76 -51.93 -0.40 0.28 16 32 H 0.41 5.14 8.94 -40.82 -0.36 4.78 16 33 H 0.41 4.57 8.93 -40.82 -0.36 4.21 16 34 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.14 2.37 7.65 -52.49 -0.40 1.97 16 LS Contribution 310.79 15.07 4.68 4.68 Total: -1.00 -30.27 310.79 -10.67 -40.94 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -4.64 Total: 8.24 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -5.70 Total: 0.92 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: 0.02 Total: -70.38 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.27 -10.67 -40.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133219067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.696 kcal (2) G-P(sol) polarization free energy of solvation -30.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds