Wall clock time and date at job start Mon Mar 30 2020 05:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46916 * 2 1 4 4 C 1.50700 * 109.46999 * 240.00427 * 2 1 3 5 5 H 1.08001 * 119.99870 * 245.51424 * 4 2 1 6 6 C 1.37880 * 120.00224 * 65.51862 * 4 2 1 7 7 N 1.31517 * 119.99596 * 9.16653 * 6 4 2 8 8 Si 1.86794 * 119.99908 * 189.16057 * 6 4 2 9 9 H 1.48504 * 109.46693 * 94.99813 * 8 6 4 10 10 H 1.48504 * 109.47323 * 214.98935 * 8 6 4 11 11 H 1.48492 * 109.47567 * 334.99645 * 8 6 4 12 12 N 1.46895 * 109.47268 * 120.00122 * 2 1 3 13 13 C 1.46894 * 111.00122 * 182.36617 * 12 2 1 14 14 C 1.37832 * 111.00077 * 306.32463 * 12 2 1 15 15 N 1.32492 * 120.84599 * 296.37993 * 14 12 2 16 16 C 1.33004 * 121.43102 * 179.97438 * 15 14 12 17 17 N 1.38311 * 118.62088 * 180.02562 * 16 15 14 18 18 N 1.31944 * 122.75904 * 0.02562 * 16 15 14 19 19 C 1.34117 * 120.40962 * 359.68642 * 18 16 15 20 20 C 1.40156 * 121.90448 * 179.72523 * 19 18 16 21 21 C 1.36341 * 119.59114 * 180.26298 * 20 19 18 22 22 C 1.39192 * 121.00642 * 0.30142 * 21 20 19 23 23 C 1.36418 * 120.89713 * 0.02562 * 22 21 20 24 24 C 1.39901 * 119.52693 * 359.96911 * 23 22 21 25 25 H 1.08995 * 109.47091 * 304.48126 * 1 2 3 26 26 H 1.09001 * 109.47094 * 64.47665 * 1 2 3 27 27 H 1.08994 * 109.46971 * 184.47579 * 1 2 3 28 28 H 0.97001 * 119.99263 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47031 * 187.89999 * 13 12 2 30 30 H 1.08996 * 109.47522 * 307.90069 * 13 12 2 31 31 H 1.09006 * 109.47106 * 67.90373 * 13 12 2 32 32 H 0.97000 * 120.00024 * 359.97438 * 17 16 15 33 33 H 0.97003 * 120.00022 * 180.02562 * 17 16 15 34 34 H 1.07994 * 120.21019 * 0.54060 * 20 19 18 35 35 H 1.07993 * 119.49730 * 180.28061 * 21 20 19 36 36 H 1.07995 * 119.54904 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.23763 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5778 -1.6374 -1.1340 6 6 1.7956 -0.1766 -2.4796 7 7 1.2942 1.0339 -2.5931 8 14 2.1873 -1.1728 -4.0104 9 1 0.9631 -1.8772 -4.4692 10 1 2.6668 -0.2644 -5.0829 11 1 3.2431 -2.1686 -3.6964 12 7 2.0197 -0.6925 1.1994 13 6 3.4870 -0.6632 1.2619 14 6 1.4658 -0.1546 2.3411 15 7 1.7083 1.1011 2.6873 16 6 1.1796 1.6321 3.7862 17 7 1.4713 2.9490 4.0920 18 7 0.3884 0.9553 4.5967 19 6 0.0769 -0.3219 4.3313 20 6 -0.7556 -1.0717 5.1733 21 6 -1.0372 -2.3686 4.8608 22 6 -0.5052 -2.9630 3.7202 23 6 0.3139 -2.2637 2.8829 24 6 0.6225 -0.9307 3.1748 25 1 -0.3633 0.5818 0.8471 26 1 -0.3633 0.4428 -0.9274 27 1 -0.3633 -1.0245 0.0802 28 1 1.1273 1.4092 -3.4719 29 1 3.8286 -1.2991 2.0788 30 1 3.8982 -1.0285 0.3209 31 1 3.8231 0.3596 1.4327 32 1 2.0510 3.4651 3.5103 33 1 1.0967 3.3563 4.8888 34 1 -1.1752 -0.6237 6.0619 35 1 -1.6825 -2.9435 5.5083 36 1 -0.7434 -3.9921 3.4954 37 1 0.7204 -2.7353 2.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133219067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:05 Heat of formation + Delta-G solvation = 68.494771 kcal Electronic energy + Delta-G solvation = -21021.595044 eV Core-core repulsion = 17991.581229 eV Total energy + Delta-G solvation = -3030.013815 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.34396 -39.22316 -38.67736 -35.40469 -34.68235 -33.67056 -31.93921 -31.39781 -30.10628 -27.76653 -26.47450 -24.89668 -24.35821 -23.17985 -21.72036 -19.82875 -19.03505 -18.44163 -17.71106 -17.16075 -16.82010 -16.48581 -16.16449 -15.83554 -15.46515 -15.22795 -14.98247 -14.64888 -14.10812 -13.76643 -13.49135 -13.28938 -13.11823 -12.86527 -12.63173 -12.48735 -12.33743 -12.24422 -12.14881 -11.82490 -11.58107 -11.14607 -11.04730 -10.59178 -10.17185 -9.80483 -9.52620 -8.72538 -8.16959 -6.26560 -0.61049 0.00603 1.00148 1.45627 1.47260 1.57751 2.16089 2.21792 2.41588 2.76251 3.15301 3.20444 3.32972 3.80673 3.90807 4.11853 4.25921 4.41974 4.47127 4.58577 4.63307 4.66516 4.82075 4.88335 4.92362 5.05608 5.14816 5.30466 5.35729 5.43695 5.55154 5.59531 5.69396 5.91860 5.97354 6.04221 6.07757 6.30982 6.44972 6.59379 6.84834 7.41427 7.46237 8.92643 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021297 B = 0.006091 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.416647 B = 4595.683508 C = 5326.543974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.233 3.767 3 H -0.019 1.019 4 C -0.518 4.518 5 H 0.072 0.928 6 C 0.015 3.985 7 N -0.923 5.923 8 Si 0.964 3.036 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.261 1.261 12 N -0.490 5.490 13 C 0.046 3.954 14 C 0.440 3.560 15 N -0.625 5.625 16 C 0.563 3.437 17 N -0.808 5.808 18 N -0.599 5.599 19 C 0.185 3.815 20 C -0.145 4.145 21 C -0.048 4.048 22 C -0.150 4.150 23 C -0.045 4.045 24 C -0.208 4.208 25 H -0.001 1.001 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.263 0.737 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.020 0.980 32 H 0.417 0.583 33 H 0.422 0.578 34 H 0.149 0.851 35 H 0.172 0.828 36 H 0.160 0.840 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.385 -5.419 13.963 15.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.128 3.872 3 H -0.001 1.001 4 C -0.557 4.557 5 H 0.090 0.910 6 C -0.184 4.184 7 N -0.562 5.562 8 Si 0.790 3.210 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.185 1.185 12 N -0.214 5.214 13 C -0.101 4.101 14 C 0.189 3.811 15 N -0.351 5.351 16 C 0.202 3.798 17 N -0.358 5.358 18 N -0.327 5.327 19 C 0.057 3.943 20 C -0.164 4.164 21 C -0.068 4.068 22 C -0.169 4.169 23 C -0.066 4.066 24 C -0.216 4.216 25 H 0.018 0.982 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.039 0.961 32 H 0.249 0.751 33 H 0.255 0.745 34 H 0.167 0.833 35 H 0.189 0.811 36 H 0.177 0.823 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.398 -4.761 14.116 15.089 hybrid contribution 0.448 0.763 -1.273 1.550 sum -1.950 -3.998 12.843 13.592 Atomic orbital electron populations 1.21554 0.97860 0.99102 0.98216 1.19072 0.91705 0.91185 0.85256 1.00139 1.21268 1.36088 1.08286 0.90018 0.91005 1.25756 0.95092 0.95431 1.02151 1.70128 1.45784 1.15715 1.24610 0.85441 0.78681 0.78501 0.78421 1.20117 1.21429 1.18486 1.60221 1.09011 1.52452 0.99748 1.22226 0.84797 0.99772 1.03292 1.20603 0.86114 0.85296 0.89070 1.67933 1.31339 1.15995 1.19782 1.19459 0.86891 0.88465 0.85029 1.41660 1.55656 1.07172 1.31337 1.68305 1.22194 1.08904 1.33260 1.19083 0.94014 0.89122 0.92076 1.20804 1.00211 0.94885 1.00536 1.21435 0.95952 0.93586 0.95849 1.21291 0.98526 1.01885 0.95161 1.21098 0.95175 0.91308 0.98998 1.19291 1.05033 0.98383 0.98859 0.98223 0.93157 0.93179 0.92844 0.90852 0.89647 0.96097 0.75121 0.74465 0.83329 0.81057 0.82260 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.53 8.72 71.98 0.63 -4.91 16 2 C 0.23 12.05 1.77 44.17 0.08 12.13 16 3 H -0.02 -1.15 8.03 -2.39 -0.02 -1.17 16 4 C -0.52 -27.64 7.62 25.60 0.20 -27.45 16 5 H 0.07 3.70 7.14 -2.91 -0.02 3.68 16 6 C 0.02 0.81 5.17 84.65 0.44 1.25 16 7 N -0.92 -53.49 12.15 21.45 0.26 -53.23 16 8 Si 0.96 42.44 29.55 68.60 2.03 44.47 16 9 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 12 N -0.49 -21.62 3.87 -705.22 -2.73 -24.35 16 13 C 0.05 1.84 9.35 127.69 1.19 3.04 16 14 C 0.44 18.67 3.76 134.08 0.50 19.17 16 15 N -0.63 -26.75 9.71 -194.76 -1.89 -28.64 16 16 C 0.56 21.20 8.63 261.55 2.26 23.45 16 17 N -0.81 -22.65 9.06 -59.83 -0.54 -23.19 16 18 N -0.60 -21.91 10.46 -191.93 -2.01 -23.91 16 19 C 0.19 6.51 6.61 40.09 0.27 6.78 16 20 C -0.14 -3.79 10.01 22.29 0.22 -3.56 16 21 C -0.05 -0.96 9.95 22.06 0.22 -0.74 16 22 C -0.15 -3.41 9.96 22.07 0.22 -3.19 16 23 C -0.05 -1.42 9.58 22.25 0.21 -1.21 16 24 C -0.21 -7.78 5.76 -21.18 -0.12 -7.90 16 25 H 0.00 -0.07 7.25 -2.39 -0.02 -0.08 16 26 H 0.05 2.76 6.80 -2.39 -0.02 2.75 16 27 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.08 3.47 6.52 -2.39 -0.02 3.46 16 31 H 0.02 0.86 7.76 -2.38 -0.02 0.85 16 32 H 0.42 10.70 8.94 -92.71 -0.83 9.87 16 33 H 0.42 9.31 8.93 -92.71 -0.83 8.48 16 34 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 35 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 37 H 0.13 4.37 7.65 -2.91 -0.02 4.35 16 Total: -1.00 -67.88 310.79 0.88 -67.00 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: -0.55 Total: 24.98 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 6.31 Total: 16.87 kcal Atomic # 7 Polarization: -146.41 SS G_CDS: -6.91 Total: -153.32 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -67.88 0.88 -67.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133219067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.496 kcal (2) G-P(sol) polarization free energy of solvation -67.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds