Wall clock time and date at job start Mon Mar 30 2020 05:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.62563 * 2 1 4 4 C 1.53240 * 109.62875 * 239.61215 * 2 1 3 5 5 N 1.46959 * 109.30938 * 186.66159 * 4 2 1 6 6 C 1.46896 * 110.96952 * 187.06275 * 5 4 2 7 7 C 1.46902 * 111.44399 * 62.81011 * 5 4 2 8 8 C 1.53241 * 109.33642 * 296.98101 * 7 5 4 9 9 H 1.09000 * 109.62782 * 294.11670 * 8 7 5 10 10 C 1.53002 * 109.78913 * 173.63687 * 8 7 5 11 11 N 1.47073 * 108.52357 * 53.83343 * 8 7 5 12 12 C 1.34777 * 120.88408 * 128.84017 * 11 8 7 13 13 O 1.21283 * 119.99876 * 345.60344 * 12 11 8 14 14 C 1.50702 * 120.00284 * 165.61197 * 12 11 8 15 15 S 1.81000 * 109.46883 * 184.59331 * 14 12 11 16 16 C 1.76202 * 99.99762 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00065 * 0.02562 * 16 15 14 18 18 C 1.38800 * 120.00173 * 179.97438 * 16 15 14 19 19 N 1.31625 * 120.00396 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99767 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.46979 * 89.99992 * 20 18 16 22 22 H 1.48492 * 109.47049 * 209.99840 * 20 18 16 23 23 H 1.48500 * 109.46885 * 330.00055 * 20 18 16 24 24 H 1.09004 * 109.46942 * 302.78306 * 1 2 3 25 25 H 1.09003 * 109.46836 * 182.78535 * 1 2 3 26 26 H 1.08994 * 109.47097 * 62.78676 * 1 2 3 27 27 H 1.08994 * 109.49026 * 306.41657 * 4 2 1 28 28 H 1.08993 * 109.49239 * 66.50058 * 4 2 1 29 29 H 1.09001 * 109.46773 * 295.49872 * 6 5 4 30 30 H 1.08998 * 109.46936 * 55.48855 * 6 5 4 31 31 H 1.08990 * 109.47639 * 175.49488 * 6 5 4 32 32 H 1.08997 * 109.48940 * 177.02547 * 7 5 4 33 33 H 1.08991 * 109.49588 * 56.93978 * 7 5 4 34 34 H 1.09002 * 109.47055 * 295.70885 * 10 8 7 35 35 H 1.09013 * 109.46922 * 55.70334 * 10 8 7 36 36 H 1.08993 * 109.47668 * 175.69922 * 10 8 7 37 37 H 1.08999 * 109.46526 * 304.59345 * 14 12 11 38 38 H 1.08999 * 109.47089 * 64.59173 * 14 12 11 39 39 H 0.96995 * 120.00194 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0447 -0.7301 -1.2451 5 7 3.5055 -0.8664 -1.1593 6 6 4.0569 -1.4103 -2.4075 7 6 3.9016 -1.6870 -0.0071 8 6 3.4629 -0.9916 1.2860 9 1 4.0177 -0.0613 1.4078 10 6 3.7273 -1.9080 2.4824 11 7 2.0241 -0.7007 1.1951 12 6 1.1808 -1.0659 2.1809 13 8 1.5414 -1.8592 3.0245 14 6 -0.2103 -0.4888 2.2350 15 16 -1.0438 -1.0632 3.7355 16 6 -2.6009 -0.2602 3.5469 17 1 -2.7865 0.3621 2.6840 18 6 -3.5892 -0.4282 4.5069 19 7 -4.7521 0.1720 4.3664 20 14 -3.2682 -1.5052 5.9992 21 1 -2.6950 -0.6789 7.0918 22 1 -4.5444 -2.1122 6.4551 23 1 -2.3102 -2.5803 5.6368 24 1 -0.3633 0.5565 0.8640 25 1 -0.3633 -1.0265 0.0499 26 1 -0.3633 0.4699 -0.9139 27 1 1.5924 -1.7203 -1.2990 28 1 1.7810 -0.1602 -2.1359 29 1 3.6863 -2.4244 -2.5568 30 1 3.7483 -0.7839 -3.2444 31 1 5.1450 -1.4263 -2.3475 32 1 4.9845 -1.8110 -0.0041 33 1 3.4234 -2.6641 -0.0749 34 1 3.1069 -2.8005 2.4005 35 1 4.7786 -2.1961 2.4940 36 1 3.4851 -1.3803 3.4048 37 1 -0.1519 0.5995 2.2457 38 1 -0.7728 -0.8139 1.3598 39 1 -5.4429 0.0543 5.0370 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155003220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:34 Heat of formation + Delta-G solvation = 38.674791 kcal Electronic energy + Delta-G solvation = -19825.561309 eV Core-core repulsion = 16897.405602 eV Total energy + Delta-G solvation = -2928.155706 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.71390 -37.91993 -35.45226 -34.14014 -32.42074 -30.19408 -29.56467 -27.25357 -26.11431 -25.57056 -23.08568 -21.86313 -21.44747 -19.15473 -17.69756 -16.49550 -16.24051 -15.74424 -15.40947 -15.18079 -14.92764 -14.54875 -14.19456 -13.81862 -13.62398 -13.28668 -12.84582 -12.63479 -12.47663 -12.29185 -12.09941 -11.85861 -11.60800 -11.39763 -11.35007 -11.20150 -11.01683 -10.85857 -10.68630 -10.19090 -9.71454 -8.97752 -8.83481 -8.78251 -8.34389 -8.26845 -6.87398 -6.27255 -3.98155 2.73051 2.93642 3.18026 3.34535 3.52506 3.58689 3.65298 4.35052 4.50045 4.64776 4.71279 4.83457 4.96388 5.04687 5.09132 5.12349 5.17960 5.21264 5.36188 5.38979 5.43498 5.49486 5.56431 5.63193 5.66145 5.77894 5.86800 5.94231 6.07332 6.16259 6.22782 6.45835 6.67820 6.71841 6.82907 7.57528 7.95775 8.42554 8.50356 9.19677 10.81895 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034571 B = 0.004924 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.723121 B = 5684.646904 C = 6333.654114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.149 3.851 3 H 0.082 0.918 4 C 0.046 3.954 5 N -0.546 5.546 6 C 0.026 3.974 7 C 0.045 3.955 8 C 0.152 3.848 9 H 0.075 0.925 10 C -0.140 4.140 11 N -0.619 5.619 12 C 0.537 3.463 13 O -0.510 6.510 14 C -0.150 4.150 15 S -0.165 6.165 16 C -0.516 4.516 17 H 0.087 0.913 18 C 0.096 3.904 19 N -0.882 5.882 20 Si 0.857 3.143 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.236 1.236 24 H 0.112 0.888 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.133 0.867 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.552 -1.316 -12.988 21.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.045 3.955 3 H 0.100 0.900 4 C -0.083 4.083 5 N -0.270 5.270 6 C -0.122 4.122 7 C -0.084 4.084 8 C 0.048 3.952 9 H 0.093 0.907 10 C -0.198 4.198 11 N -0.357 5.357 12 C 0.325 3.675 13 O -0.385 6.385 14 C -0.299 4.299 15 S 0.061 5.939 16 C -0.663 4.663 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.519 5.519 20 Si 0.682 3.318 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.159 1.159 24 H 0.130 0.870 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.105 0.895 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.151 0.849 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.124 -1.941 -11.550 20.746 hybrid contribution -0.869 -0.215 -0.623 1.091 sum 16.255 -2.156 -12.173 20.422 Atomic orbital electron populations 1.23646 0.93616 1.03677 1.05480 1.21193 0.94571 0.96156 0.83542 0.90007 1.22589 0.87301 0.99961 0.98454 1.61879 1.10826 1.50889 1.03376 1.22352 1.00378 0.97843 0.91632 1.22604 1.00795 0.94725 0.90261 1.21276 0.80570 0.98639 0.94701 0.90688 1.22208 0.99571 1.01074 0.96912 1.48283 1.07354 1.60051 1.19977 1.20241 0.86322 0.80699 0.80265 1.90720 1.75936 1.32027 1.39821 1.25189 0.96133 1.03223 1.05329 1.84802 1.14805 1.66219 1.28035 1.22266 0.97065 1.34335 1.12683 0.89449 1.24706 0.93962 0.94889 0.97715 1.69934 1.04340 1.42012 1.35567 0.86727 0.79175 0.82564 0.83338 1.19315 1.20087 1.15948 0.86972 0.90862 0.91198 0.94195 0.89471 0.95676 0.91244 0.91269 0.89782 0.94203 0.90284 0.93884 0.90953 0.88180 0.84931 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.45 7.07 37.16 0.26 -2.19 16 2 C 0.15 1.73 3.62 -67.49 -0.24 1.49 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.05 0.46 4.93 -3.67 -0.02 0.45 16 5 N -0.55 -5.50 4.88 -242.57 -1.18 -6.69 16 6 C 0.03 0.20 9.58 60.06 0.58 0.78 16 7 C 0.04 0.48 4.93 -3.70 -0.02 0.46 16 8 C 0.15 1.92 3.64 -67.49 -0.25 1.67 16 9 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 10 C -0.14 -1.92 7.63 37.16 0.28 -1.64 16 11 N -0.62 -8.84 3.01 -157.45 -0.47 -9.31 16 12 C 0.54 9.70 7.31 -10.98 -0.08 9.62 16 13 O -0.51 -10.65 11.48 5.55 0.06 -10.59 16 14 C -0.15 -2.88 3.75 36.01 0.13 -2.74 16 15 S -0.17 -4.17 18.55 -107.50 -1.99 -6.16 16 16 C -0.52 -14.71 10.04 30.94 0.31 -14.40 16 17 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 18 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 19 N -0.88 -26.52 13.97 55.49 0.78 -25.75 16 20 Si 0.86 21.88 27.74 -169.99 -4.72 17.17 16 21 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 24 H 0.11 1.54 3.95 -64.92 -0.26 1.28 16 25 H 0.07 0.95 6.39 -51.93 -0.33 0.62 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 29 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 1.26 6.58 -51.93 -0.34 0.92 16 35 H 0.04 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.07 1.15 7.00 -51.93 -0.36 0.79 16 37 H 0.10 1.82 6.64 -51.92 -0.34 1.47 16 38 H 0.13 2.36 4.12 -57.01 -0.24 2.12 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 308.98 15.07 4.66 4.66 Total: -1.00 -32.34 308.98 -8.10 -40.44 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.09 Total: 0.04 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 0.87 Total: -3.81 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: -0.88 Total: -41.74 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.06 Total: -10.59 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.72 Total: 17.17 kcal Atomic # 16 Polarization: -4.17 SS G_CDS: -1.99 Total: -6.16 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.34 -8.10 -40.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155003220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.116 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds