Wall clock time and date at job start Mon Mar 30 2020 05:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.62563 * 2 1 4 4 C 1.53240 * 109.62875 * 239.61215 * 2 1 3 5 5 N 1.46959 * 109.30938 * 186.66159 * 4 2 1 6 6 C 1.46896 * 110.96952 * 187.06275 * 5 4 2 7 7 C 1.46902 * 111.44399 * 62.81011 * 5 4 2 8 8 C 1.53241 * 109.33642 * 296.98101 * 7 5 4 9 9 H 1.09000 * 109.62782 * 294.11670 * 8 7 5 10 10 C 1.53002 * 109.78913 * 173.63687 * 8 7 5 11 11 N 1.47073 * 108.52357 * 53.83343 * 8 7 5 12 12 C 1.34777 * 120.88408 * 128.84017 * 11 8 7 13 13 O 1.21283 * 119.99876 * 345.60344 * 12 11 8 14 14 C 1.50702 * 120.00284 * 165.61197 * 12 11 8 15 15 S 1.81000 * 109.46883 * 184.59331 * 14 12 11 16 16 C 1.76202 * 99.99762 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00065 * 0.02562 * 16 15 14 18 18 C 1.38800 * 120.00173 * 179.97438 * 16 15 14 19 19 N 1.31625 * 120.00396 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99767 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.46979 * 89.99992 * 20 18 16 22 22 H 1.48492 * 109.47049 * 209.99840 * 20 18 16 23 23 H 1.48500 * 109.46885 * 330.00055 * 20 18 16 24 24 H 1.09004 * 109.46942 * 302.78306 * 1 2 3 25 25 H 1.09003 * 109.46836 * 182.78535 * 1 2 3 26 26 H 1.08994 * 109.47097 * 62.78676 * 1 2 3 27 27 H 1.08994 * 109.49026 * 306.41657 * 4 2 1 28 28 H 1.08993 * 109.49239 * 66.50058 * 4 2 1 29 29 H 1.09001 * 109.46773 * 295.49872 * 6 5 4 30 30 H 1.08998 * 109.46936 * 55.48855 * 6 5 4 31 31 H 1.08990 * 109.47639 * 175.49488 * 6 5 4 32 32 H 1.08997 * 109.48940 * 177.02547 * 7 5 4 33 33 H 1.08991 * 109.49588 * 56.93978 * 7 5 4 34 34 H 1.09002 * 109.47055 * 295.70885 * 10 8 7 35 35 H 1.09013 * 109.46922 * 55.70334 * 10 8 7 36 36 H 1.08993 * 109.47668 * 175.69922 * 10 8 7 37 37 H 1.08999 * 109.46526 * 304.59345 * 14 12 11 38 38 H 1.08999 * 109.47089 * 64.59173 * 14 12 11 39 39 H 0.96995 * 120.00194 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0447 -0.7301 -1.2451 5 7 3.5055 -0.8664 -1.1593 6 6 4.0569 -1.4103 -2.4075 7 6 3.9016 -1.6870 -0.0071 8 6 3.4629 -0.9916 1.2860 9 1 4.0177 -0.0613 1.4078 10 6 3.7273 -1.9080 2.4824 11 7 2.0241 -0.7007 1.1951 12 6 1.1808 -1.0659 2.1809 13 8 1.5414 -1.8592 3.0245 14 6 -0.2103 -0.4888 2.2350 15 16 -1.0438 -1.0632 3.7355 16 6 -2.6009 -0.2602 3.5469 17 1 -2.7865 0.3621 2.6840 18 6 -3.5892 -0.4282 4.5069 19 7 -4.7521 0.1720 4.3664 20 14 -3.2682 -1.5052 5.9992 21 1 -2.6950 -0.6789 7.0918 22 1 -4.5444 -2.1122 6.4551 23 1 -2.3102 -2.5803 5.6368 24 1 -0.3633 0.5565 0.8640 25 1 -0.3633 -1.0265 0.0499 26 1 -0.3633 0.4699 -0.9139 27 1 1.5924 -1.7203 -1.2990 28 1 1.7810 -0.1602 -2.1359 29 1 3.6863 -2.4244 -2.5568 30 1 3.7483 -0.7839 -3.2444 31 1 5.1450 -1.4263 -2.3475 32 1 4.9845 -1.8110 -0.0041 33 1 3.4234 -2.6641 -0.0749 34 1 3.1069 -2.8005 2.4005 35 1 4.7786 -2.1961 2.4940 36 1 3.4851 -1.3803 3.4048 37 1 -0.1519 0.5995 2.2457 38 1 -0.7728 -0.8139 1.3598 39 1 -5.4429 0.0543 5.0370 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155003220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:33 Heat of formation + Delta-G solvation = 15.885221 kcal Electronic energy + Delta-G solvation = -19826.549539 eV Core-core repulsion = 16897.405602 eV Total energy + Delta-G solvation = -2929.143936 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.89889 -39.02357 -36.55772 -35.19392 -34.65139 -31.45062 -30.64999 -28.10078 -27.84803 -27.07284 -24.08821 -22.88150 -22.46591 -20.49851 -19.61212 -17.74946 -17.51302 -17.07580 -16.69296 -16.51905 -16.22587 -15.54245 -15.42210 -15.22060 -14.95719 -14.87910 -14.39224 -13.62359 -13.48158 -13.35508 -13.25152 -13.08816 -13.04751 -12.81024 -12.69137 -12.46054 -12.42213 -12.11651 -11.97018 -11.79710 -11.52009 -11.13583 -10.25698 -10.11453 -9.76365 -9.31363 -8.94307 -8.49872 -6.19401 1.01124 1.30850 1.46155 1.50612 1.56872 2.03489 2.26193 2.72074 2.84888 2.88602 3.45407 3.73871 3.79658 3.98815 4.04630 4.10897 4.21377 4.24043 4.35701 4.49588 4.55786 4.62137 4.62967 4.66021 4.73417 4.76891 4.88758 5.00212 5.03998 5.12972 5.17167 5.34761 5.63549 5.73007 5.95060 5.98203 6.13345 6.33547 6.96329 7.12987 8.62303 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034571 B = 0.004924 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.723121 B = 5684.646904 C = 6333.654114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.145 3.855 3 H 0.097 0.903 4 C 0.050 3.950 5 N -0.550 5.550 6 C 0.026 3.974 7 C 0.052 3.948 8 C 0.147 3.853 9 H 0.089 0.911 10 C -0.131 4.131 11 N -0.611 5.611 12 C 0.535 3.465 13 O -0.546 6.546 14 C -0.131 4.131 15 S -0.206 6.206 16 C -0.519 4.519 17 H 0.065 0.935 18 C 0.047 3.953 19 N -0.917 5.917 20 Si 0.913 3.087 21 H -0.264 1.264 22 H -0.261 1.261 23 H -0.239 1.239 24 H 0.092 0.908 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.028 0.972 28 H 0.113 0.887 29 H 0.022 0.978 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.025 0.975 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.112 0.888 38 H 0.149 0.851 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.458 -1.155 -14.645 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.043 3.957 3 H 0.115 0.885 4 C -0.079 4.079 5 N -0.274 5.274 6 C -0.121 4.121 7 C -0.077 4.077 8 C 0.045 3.955 9 H 0.106 0.894 10 C -0.189 4.189 11 N -0.347 5.347 12 C 0.323 3.677 13 O -0.424 6.424 14 C -0.280 4.280 15 S 0.021 5.979 16 C -0.667 4.667 17 H 0.083 0.917 18 C -0.158 4.158 19 N -0.556 5.556 20 Si 0.735 3.265 21 H -0.189 1.189 22 H -0.185 1.185 23 H -0.163 1.163 24 H 0.110 0.890 25 H 0.078 0.922 26 H 0.118 0.882 27 H 0.046 0.954 28 H 0.131 0.869 29 H 0.041 0.959 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.130 0.870 38 H 0.166 0.834 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 19.049 -1.762 -13.250 23.271 hybrid contribution -1.352 -0.189 -0.282 1.394 sum 17.697 -1.951 -13.532 22.363 Atomic orbital electron populations 1.23466 0.93952 1.02625 1.06044 1.21448 0.94330 0.96895 0.83073 0.88506 1.22575 0.87507 0.99498 0.98301 1.61914 1.10573 1.50862 1.04060 1.22424 1.01048 0.97876 0.90799 1.22521 1.01982 0.93677 0.89485 1.21464 0.79378 0.99202 0.95473 0.89356 1.22022 1.00805 0.99782 0.96273 1.48358 1.07802 1.58996 1.19555 1.20038 0.86152 0.80647 0.80905 1.90727 1.76447 1.33678 1.41499 1.25466 0.96849 1.03772 1.01922 1.84740 1.13868 1.66635 1.32653 1.22394 0.98651 1.33846 1.11820 0.91725 1.25506 0.93850 0.96115 1.00317 1.70006 1.05243 1.43463 1.36857 0.85884 0.79455 0.80958 0.80163 1.18928 1.18489 1.16338 0.89030 0.92206 0.88174 0.95359 0.86916 0.95915 0.89885 0.90064 0.87477 0.95649 0.92956 0.90909 0.93670 0.87044 0.83382 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.46 7.07 71.98 0.51 -3.95 16 2 C 0.15 3.02 3.62 44.96 0.16 3.18 16 3 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 4 C 0.05 0.86 4.93 86.37 0.43 1.28 16 5 N -0.55 -9.21 4.88 -921.36 -4.49 -13.70 16 6 C 0.03 0.31 9.58 127.69 1.22 1.54 16 7 C 0.05 0.97 4.93 86.38 0.43 1.40 16 8 C 0.15 3.45 3.64 44.96 0.16 3.61 16 9 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 10 C -0.13 -3.52 7.63 71.98 0.55 -2.97 16 11 N -0.61 -16.63 3.01 -770.43 -2.32 -18.95 16 12 C 0.53 19.29 7.31 87.66 0.64 19.93 16 13 O -0.55 -23.22 11.48 -3.04 -0.03 -23.25 16 14 C -0.13 -5.05 3.75 71.24 0.27 -4.78 16 15 S -0.21 -10.53 18.55 -56.49 -1.05 -11.58 16 16 C -0.52 -30.22 10.04 67.95 0.68 -29.54 16 17 H 0.06 3.92 8.03 -2.91 -0.02 3.90 16 18 C 0.05 2.79 5.50 84.86 0.47 3.25 16 19 N -0.92 -55.91 13.97 21.65 0.30 -55.61 16 20 Si 0.91 45.62 27.74 68.60 1.90 47.52 16 21 H -0.26 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.24 -12.03 6.74 99.48 0.67 -11.36 16 24 H 0.09 2.41 3.95 -14.59 -0.06 2.36 16 25 H 0.06 1.49 6.39 -2.39 -0.02 1.48 16 26 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.11 1.40 8.07 -2.39 -0.02 1.39 16 29 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.11 1.53 8.11 -2.39 -0.02 1.51 16 33 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.05 1.69 6.58 -2.39 -0.02 1.67 16 35 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.04 1.45 7.00 -2.39 -0.02 1.43 16 37 H 0.11 4.04 6.64 -2.40 -0.02 4.02 16 38 H 0.15 5.27 4.12 -7.18 -0.03 5.24 16 39 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -71.03 308.98 0.75 -70.28 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.93 Total: 12.35 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 5.52 Total: -7.05 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -6.51 Total: -88.26 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.03 Total: -23.25 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.52 kcal Atomic # 16 Polarization: -10.53 SS G_CDS: -1.05 Total: -11.58 kcal Total: -71.03 0.75 -70.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155003220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.162 kcal (2) G-P(sol) polarization free energy of solvation -71.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds