Wall clock time and date at job start Mon Mar 30 2020 04:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37908 * 119.50096 * 2 1 4 4 C 1.40092 * 119.16427 * 180.02562 * 3 2 1 5 5 C 1.43204 * 120.89077 * 180.02562 * 4 3 2 6 6 N 4.80786 * 135.19644 * 0.02562 * 2 1 3 7 7 C 1.39651 * 118.22239 * 359.97438 * 4 3 2 8 8 C 1.38987 * 118.92379 * 0.02562 * 7 4 3 9 9 N 1.39034 * 119.64065 * 179.97438 * 8 7 4 10 10 C 1.46897 * 110.99956 * 179.97438 * 9 8 7 11 11 C 1.53247 * 109.33862 * 187.25170 * 10 9 8 12 12 N 1.47074 * 108.51990 * 306.16776 * 11 10 9 13 13 C 1.36942 * 120.88247 * 231.18498 * 12 11 10 14 14 H 1.08002 * 119.99420 * 27.10940 * 13 12 11 15 15 C 1.38813 * 120.00143 * 207.11011 * 13 12 11 16 16 N 1.31617 * 119.99715 * 16.76771 * 15 13 12 17 17 Si 1.86795 * 119.99947 * 196.77399 * 15 13 12 18 18 H 1.48494 * 109.47132 * 179.97438 * 17 15 13 19 19 H 1.48507 * 109.47079 * 299.99798 * 17 15 13 20 20 H 1.48501 * 109.47054 * 59.99515 * 17 15 13 21 21 C 1.47078 * 118.23813 * 51.45896 * 12 11 10 22 22 C 1.46903 * 110.99967 * 304.30011 * 9 8 7 23 23 N 1.31940 * 119.49575 * 180.27845 * 2 1 3 24 24 H 1.08994 * 109.47617 * 89.99549 * 1 2 3 25 25 H 1.09000 * 109.47048 * 210.00374 * 1 2 3 26 26 H 1.09007 * 109.46992 * 329.99658 * 1 2 3 27 27 H 1.08005 * 120.41918 * 359.97438 * 3 2 1 28 28 H 1.08001 * 120.54370 * 179.97438 * 7 4 3 29 29 H 1.09004 * 109.49264 * 67.29290 * 10 9 8 30 30 H 1.08999 * 109.49345 * 307.21005 * 10 9 8 31 31 H 1.09000 * 109.62236 * 186.45985 * 11 10 9 32 32 H 1.08996 * 109.62383 * 65.88170 * 11 10 9 33 33 H 0.97002 * 119.99529 * 179.97438 * 16 15 13 34 34 H 1.09003 * 109.62879 * 68.24716 * 21 12 11 35 35 H 1.09001 * 109.63018 * 188.82828 * 21 12 11 36 36 H 1.09007 * 109.49038 * 292.70796 * 22 9 8 37 37 H 1.08997 * 109.49035 * 52.78697 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1861 1.2003 0.0000 4 6 3.5870 1.1920 -0.0005 5 6 4.3294 2.4166 0.0000 6 7 4.9183 3.3880 0.0015 7 6 4.2401 -0.0423 -0.0005 8 6 3.4793 -1.2054 -0.0005 9 7 4.1141 -2.4424 -0.0010 10 6 3.1344 -3.5369 -0.0003 11 6 3.8649 -4.8717 0.1816 12 7 4.9120 -4.9751 -0.8459 13 6 5.0113 -6.0871 -1.6390 14 1 4.1343 -6.6821 -1.8467 15 6 6.2391 -6.4495 -2.1757 16 7 7.3490 -5.9463 -1.6784 17 14 6.3161 -7.6512 -3.6037 18 1 7.7331 -7.8712 -3.9896 19 1 5.7070 -8.9431 -3.1969 20 1 5.5693 -7.0942 -4.7601 21 6 5.8535 -3.8550 -0.9952 22 6 5.0417 -2.5576 -1.1344 23 7 2.1566 -1.1484 -0.0056 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6447 2.1349 -0.0004 28 1 5.3190 -0.0924 -0.0014 29 1 2.5955 -3.5434 -0.9478 30 1 2.4295 -3.3935 0.8186 31 1 3.1584 -5.6940 0.0685 32 1 4.3187 -4.9087 1.1720 33 1 8.2070 -6.1998 -2.0532 34 1 6.4949 -3.7962 -0.1157 35 1 6.4626 -4.0049 -1.8866 36 1 4.4765 -2.5775 -2.0663 37 1 5.7196 -1.7040 -1.1377 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160928407.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:48 Heat of formation + Delta-G solvation = 106.761521 kcal Electronic energy + Delta-G solvation = -20291.523574 eV Core-core repulsion = 17263.169130 eV Total energy + Delta-G solvation = -3028.354444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.78382 -38.11042 -36.82970 -34.76921 -33.19921 -32.02890 -30.84570 -29.94157 -27.80229 -26.41435 -24.60630 -23.44594 -22.56903 -21.57374 -19.46116 -18.44834 -17.05287 -16.65931 -16.03475 -15.66809 -15.03586 -14.75300 -14.13093 -14.00359 -13.75655 -13.64056 -13.52182 -13.26494 -13.22640 -13.13267 -12.81888 -12.43466 -12.12773 -11.96110 -11.52367 -11.20366 -10.79244 -10.67619 -10.46941 -10.28394 -9.98780 -9.86884 -9.80319 -9.57212 -9.49157 -8.56500 -7.89234 -6.76338 -5.85039 -3.26823 0.54917 1.02634 2.37869 2.82781 3.35751 3.41971 3.42648 3.45613 3.63588 3.89178 4.33473 4.45575 4.77959 4.92583 4.94761 5.27929 5.32395 5.37091 5.40637 5.44282 5.59682 5.72367 5.80684 5.89107 5.90928 6.03736 6.09432 6.18422 6.33518 6.35708 6.57692 6.79899 7.03016 7.18190 7.29535 7.43799 7.52099 7.73851 8.00556 8.36059 9.13647 9.76400 10.34143 11.24269 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025866 B = 0.004418 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.254371 B = 6335.897453 C = 7007.516377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.162 3.838 3 C -0.174 4.174 4 C 0.042 3.958 5 C 0.260 3.740 6 N -0.407 5.407 7 C -0.152 4.152 8 C 0.337 3.663 9 N -0.468 5.468 10 C 0.056 3.944 11 C 0.143 3.857 12 N -0.595 5.595 13 C -0.255 4.255 14 H 0.068 0.932 15 C 0.003 3.997 16 N -0.904 5.904 17 Si 0.904 3.096 18 H -0.290 1.290 19 H -0.282 1.282 20 H -0.284 1.284 21 C 0.177 3.823 22 C 0.037 3.963 23 N -0.506 5.506 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.256 0.744 34 H 0.032 0.968 35 H 0.096 0.904 36 H 0.044 0.956 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.233 11.807 2.939 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.023 3.977 3 C -0.198 4.198 4 C 0.031 3.969 5 C -0.056 4.056 6 N -0.082 5.082 7 C -0.178 4.178 8 C 0.104 3.896 9 N -0.184 5.184 10 C -0.072 4.072 11 C 0.016 3.984 12 N -0.319 5.319 13 C -0.384 4.384 14 H 0.085 0.915 15 C -0.195 4.195 16 N -0.549 5.549 17 Si 0.734 3.266 18 H -0.216 1.216 19 H -0.208 1.208 20 H -0.210 1.210 21 C 0.050 3.950 22 C -0.090 4.090 23 N -0.222 5.222 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.157 0.843 28 H 0.164 0.836 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.114 0.886 36 H 0.062 0.938 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.273 12.325 3.288 16.378 hybrid contribution 0.095 -0.123 -1.217 1.227 sum -10.178 12.202 2.072 16.024 Atomic orbital electron populations 1.20739 0.88349 1.03667 1.03349 1.20987 0.96891 0.87141 0.92713 1.21698 0.92116 0.99930 1.06036 1.15957 0.92069 0.87020 1.01824 1.25494 0.93350 0.92750 0.94005 1.81251 1.08277 1.10865 1.07857 1.21608 1.01719 0.90008 1.04499 1.20026 0.87589 0.91213 0.90744 1.59078 1.18288 0.99534 1.41462 1.22588 0.92694 0.90550 1.01340 1.21105 0.91612 0.93127 0.92517 1.44147 1.33407 1.16604 1.37705 1.19165 0.92975 1.03584 1.22708 0.91477 1.25036 0.95303 0.98824 1.00363 1.69995 0.96855 1.46959 1.41045 0.86348 0.76630 0.80982 0.82686 1.21588 1.20822 1.21029 1.21027 0.90221 0.81676 1.02055 1.23306 0.94423 1.02570 0.88656 1.67500 1.09017 1.29633 1.16041 0.90140 0.90106 0.90562 0.84300 0.83581 0.93421 0.90522 0.91911 0.95535 0.93445 0.95014 0.88574 0.93801 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.16 36.00 0.37 -0.42 16 2 C 0.16 1.78 6.77 -82.67 -0.56 1.22 16 3 C -0.17 -1.72 9.47 -39.01 -0.37 -2.09 16 4 C 0.04 0.48 5.75 -106.75 -0.61 -0.13 16 5 C 0.26 3.12 15.40 -22.47 -0.35 2.78 16 6 N -0.41 -5.60 18.54 41.84 0.78 -4.83 16 7 C -0.15 -1.98 8.91 -38.78 -0.35 -2.32 16 8 C 0.34 5.07 6.41 -155.05 -0.99 4.08 16 9 N -0.47 -8.08 4.65 -172.66 -0.80 -8.88 16 10 C 0.06 0.99 4.82 -3.70 -0.02 0.98 16 11 C 0.14 2.92 6.69 -3.60 -0.02 2.90 16 12 N -0.60 -14.45 3.03 -171.74 -0.52 -14.97 16 13 C -0.25 -6.78 9.63 -15.06 -0.14 -6.92 16 14 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 15 C 0.00 0.09 4.94 -17.43 -0.09 0.00 16 16 N -0.90 -25.40 11.15 55.49 0.62 -24.79 16 17 Si 0.90 21.12 29.59 -169.99 -5.03 16.09 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.18 4.01 5.44 -3.37 -0.02 3.99 16 22 C 0.04 0.67 5.43 -3.47 -0.02 0.65 16 23 N -0.51 -7.15 8.55 -8.73 -0.07 -7.23 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 27 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 28 H 0.15 1.78 7.14 -52.49 -0.37 1.41 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.25 7.65 -51.93 -0.40 0.85 16 31 H 0.06 1.23 7.95 -51.93 -0.41 0.82 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 2.42 6.13 -51.93 -0.32 2.10 16 36 H 0.04 0.83 8.14 -51.92 -0.42 0.40 16 37 H 0.07 1.11 6.62 -51.93 -0.34 0.77 16 LS Contribution 313.32 15.07 4.72 4.72 Total: -1.00 -29.48 313.32 -8.26 -37.74 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -4.77 Total: -2.57 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -3.17 Total: 4.71 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.00 Total: -60.69 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.48 -8.26 -37.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160928407.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.501 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds